HEAD for the HILLS, Part 2 Plants of the Sino-Himalayan
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Using Multiple Methodologies to Understand Within Species Variability of Adelges and Pineus (Hemiptera: Sternorrhyncha) Tav Aronowitz University of Vermont
University of Vermont ScholarWorks @ UVM Graduate College Dissertations and Theses Dissertations and Theses 2017 Using Multiple Methodologies to Understand within Species Variability of Adelges and Pineus (Hemiptera: Sternorrhyncha) Tav Aronowitz University of Vermont Follow this and additional works at: https://scholarworks.uvm.edu/graddis Part of the Biology Commons, Entomology Commons, and the Environmental Sciences Commons Recommended Citation Aronowitz, Tav, "Using Multiple Methodologies to Understand within Species Variability of Adelges and Pineus (Hemiptera: Sternorrhyncha)" (2017). Graduate College Dissertations and Theses. 713. https://scholarworks.uvm.edu/graddis/713 This Thesis is brought to you for free and open access by the Dissertations and Theses at ScholarWorks @ UVM. It has been accepted for inclusion in Graduate College Dissertations and Theses by an authorized administrator of ScholarWorks @ UVM. For more information, please contact [email protected]. USING MULTIPLE METHODOLOGIES TO UNDERSTAND WITHIN SPECIES VARIABILITY OF ADELGES AND PINEUS (HEMIPTERA: STERNORRHYNCHA) A Thesis Presented by Tav (Hanna) Aronowitz to The Faculty of the Graduate College of The University of Vermont In Partial Fulfillment of the Requirements for the Degree of Master of Science Specializing in Natural Resources May, 2017 Defense Date: March 6, 2016 Thesis Examination Committee: Kimberly Wallin, Ph.D., Advisor Ingi Agnarsson, Ph.D., Chairperson James D. Murdoch, Ph.D. Cynthia J. Forehand, Ph.D., Dean of the Graduate College ABSTRACT The species of two genera in Insecta: Hemiptera: Adelgidae were investigated through the lenses of genetics, morphology, life cycle and host species. The systematics are unclear due to complex life cycles, including multigenerational polymorphism, host switching and cyclical parthenogenesis. I studied the hemlock adelgids, including the nonnative invasive hemlock woolly adelgid on the east coast of the United States, that are currently viewed as a single species. -
12. RHODODENDRON Linnaeus, Sp. Pl. 1: 392. 1753
Flora of China 14: 260–455. 2005. 12. RHODODENDRON Linnaeus, Sp. Pl. 1: 392. 1753. 杜鹃属 du juan shu Fang Mingyuan (方明渊), Fang Ruizheng (方瑞征 Fang Rhui-cheng), He Mingyou (何明友), Hu Linzhen (胡琳贞 Hu Ling-cheng), Yang Hanbi (杨汉碧 Yang Han-pi); David F. Chamberlain Shrubs or trees, terrestrial or epiphytic, with various hairs, and/or with peltate scales or glabrous, indumentum sometimes detersile (the hairs tangled and coming away as a layer). Leaves evergreen, deciduous or semideciduous, alternate, sometimes clustered at stem apex; margin entire, very rarely crenulate, abaxial indumentum sometimes with a pellicle (a thin skinlike layer on the surface). Inflorescence a raceme or corymb, mostly terminal, sometimes lateral, few- to many-flowered, sometimes reduced to a single flower. Calyx persistent, 5–8-lobed, sometimes reduced to a rim, lobes minute and triangular to large and conspicuous. Corolla funnelform, campanulate, tubular, rotate or hypocrateriform, regular or slightly zygomorphic, 5(–8)-lobed, lobes imbricate in bud. Stamens 5–10(–27), inserted at base of corolla, usually declinate; filaments linear to filiform, glabrous or pilose towards base; anthers without appendages, opening by terminal or oblique pores. Disk usually thick, 5–10(–14)-lobed. Ovary 5(–18)-locular, with hairs and/or scales, rarely glabrous. Style straight or declinate to deflexed, persistent; stigma capitate-discoid, crenate to lobed. Capsule cylindrical, coniform, or ovoid, sometimes curved, dehiscent from top, septicidal; valves thick or thin, straight or twisted. Seeds very numerous, minute, fusiform, always winged, or both ends with appendages or thread-like tails. About 1000 species: Asia, Europe, North America, two species in Australia; 571 species (409 endemic) in China. -
Hemlock Woolly Adelgid
United States Department of Agriculture TECHNOLOGY TRANSFER Non-native Pest BIOLOGY AND CONTROL OF HEMLOCK WOOLLY ADELGID Nathan P. Havill Lígia C. Vieira Scott M. Salom Forest Health Technology FHTET-2014-05 Enterprise Team Revised June 2016 The Forest Health Technology Enterprise Team (FHTET) was created in 1995 by the Deputy Chief for State and Private Forestry, USDA Forest Service, to develop and deliver technologies to protect and improve the health of American forests. This book was published by FHTET as part of the technology transfer series. http://www.fs.fed.us/foresthealth/technology/ On the cover: Background image: Hemlock mortality, Jason Van Driesche, Bugwood.org Bottom left to right: HWA white ovisacs on eastern hemlock branch , Scott M. Salom, Virginia Tech; Sajiscymus tsugae, Carol Cheah, Bugwood.org; Laricobius osakensis, Ligia C. Vieira, Virginia Tech. CAUTION: PESTICIDES Pesticide Precautionary Statement This publication reports research involving pesticides. It does not contain recommen- dations for their use, nor does it imply that the uses discussed here have been regis- tered. All uses of pesticides must be registered by appropriate State and/or Federal agencies before they can be recommended. CAUTION: Pesticides can be injurious to humans, domestic animals, desirable plants, and fish or other wildlife--if they are not handled or applied properly. Use all pesticides selectively and carefully. Follow recommended practices for the disposal of surplus pesticides and pesticide containers. In accordance with Federal -
The Red List of Rhododendrons
The Red List of Rhododendrons Douglas Gibbs, David Chamberlain and George Argent BOTANIC GARDENS CONSERVATION INTERNATIONAL (BGCI) is a membership organization linking botanic gardens in over 100 countries in a shared commitment to biodiversity conservation, sustainable use and environmental education. BGCI aims to mobilize botanic gardens and work with partners to secure plant diversity for the well-being of people and the planet. BGCI provides the Secretariat for the IUCN/SSC Global Tree Specialist Group. Published by Botanic Gardens Conservation FAUNA & FLORA INTERNATIONAL (FFI) , founded in 1903 and the International, Richmond, UK world’s oldest international conservation organization, acts to conserve © 2011 Botanic Gardens Conservation International threatened species and ecosystems worldwide, choosing solutions that are sustainable, are based on sound science and take account of ISBN: 978-1-905164-35-6 human needs. Reproduction of any part of the publication for educational, conservation and other non-profit purposes is authorized without prior permission from the copyright holder, provided that the source is fully acknowledged. Reproduction for resale or other commercial purposes is prohibited without prior written permission from the copyright holder. THE GLOBAL TREES CAMPAIGN is undertaken through a partnership between FFI and BGCI, working with a wide range of other The designation of geographical entities in this document and the presentation of the material do not organizations around the world, to save the world’s most threatened trees imply any expression on the part of the authors and the habitats in which they grow through the provision of information, or Botanic Gardens Conservation International delivery of conservation action and support for sustainable use. -
Genetic Diversity and Population Structure of Rhododendron Rex Subsp
plants Article Genetic Diversity and Population Structure of Rhododendron rex Subsp. rex Inferred from Microsatellite Markers and Chloroplast DNA Sequences 1,2,3,4, 1, 1,2,3 1,2,3, Xue Zhang y, Yuan-Huan Liu y, Yue-Hua Wang and Shi-Kang Shen * 1 School of Life Sciences, Yunnan University, Kunming 650091, China; [email protected] (X.Z.); [email protected] (Y.-H.L.); [email protected] (Y.-H.W.) 2 School of Ecology and Environmental Sciences & Yunnan Key Laboratory for Plateau Mountain Ecology and Restoration of Degraded Environments, Yunnan University, Kunming 650091, China 3 Yunnan Key Laboratory of Plant Reproductive Adaptation and Evolutionary Ecology, Yunnan University, Kunming 650091, China 4 Breeding Base for State Key Laboratory of Land Degradation and Ecological Restoration in Northwest China, Key Laboratory for Restoration and Reconstruction of Degraded Ecosystem in Northwest China of Ministry of Education, Ningxia University, Yinchuan 750021, China * Correspondence: [email protected]; Tel.: +86-871-65031412 These authors contribute equals to this work. y Received: 7 February 2020; Accepted: 5 March 2020; Published: 7 March 2020 Abstract: Genetic diversity is vital to the sustainable utilization and conservation of plant species. Rhododendron rex subsp. rex Lévl. is an endangered species endemic to the southwest of China. Although the natural populations of this species are facing continuous decline due to the high frequency of anthropogenic disturbance, the genetic information of R. rex subsp. rex is not yet elucidated. In the present study, 10 pairs of microsatellite markers (nSSRs) and three pairs of chloroplast DNA (cpDNAs) were used in the elucidation of the genetic diversity, population structure, and demographic history of 11 R. -
Ecosystem Profile for the Lancang Watershed Submitted by Shanshui
Ecosystem Profile for the Lancang watershed Submitted by Shanshui Conservation Center Drafted by Lei GU, Fangyi YANG, Shan SUN, Ruijuan QI 20 March 2013 1 Content 1. Introduction ............................................................................................................................... 3 2. Biological importance of the Lancang watershed ..................................................................... 4 2.1 Ecology, Climate, Geography, Geology ........................................................................ 5 2.2 Species Diversity ......................................................................................................... 12 2.3 The Protected Area system in the Lancang Watershed................................................ 19 2.4 The Ecosystem Services of the Lancang Watershed ................................................... 24 3. Socioeconomic Context of the Lancang Watershed ................................................................ 27 3.1 Population and Urbanization ....................................................................................... 27 3.2 Society ......................................................................................................................... 29 3.3 Economy ..................................................................................................................... 30 4 An Overview of Current Threats and Their Causes ................................................................ 35 4.1 An Overview of Impacts and Threats ........................................................................ -
A Consensus Phylogenomic Approach Highlights Paleopolyploid and Rapid Radiation in the History of Ericales
RESEARCH ARTICLE A consensus phylogenomic approach highlights paleopolyploid and rapid radiation in the history of Ericales Drew A. Larson1,4 , Joseph F. Walker2 , Oscar M. Vargas3 , and Stephen A. Smith1 Manuscript received 8 December 2019; revision accepted 12 February PREMISE: Large genomic data sets offer the promise of resolving historically recalcitrant 2020. species relationships. However, different methodologies can yield conflicting results, 1 Department of Ecology & Evolutionary Biology, University of especially when clades have experienced ancient, rapid diversification. Here, we analyzed Michigan, Ann Arbor, MI 48109, USA the ancient radiation of Ericales and explored sources of uncertainty related to species tree 2 Sainsbury Laboratory (SLCU), University of Cambridge, Cambridge, inference, conflicting gene tree signal, and the inferred placement of gene and genome CB2 1LR, UK duplications. 3 Department of Ecology & Evolutionary Biology, University of California, Santa Cruz, CA 95060, USA METHODS: We used a hierarchical clustering approach, with tree-based homology and 4Author for correspondence (e-mail: [email protected]) orthology detection, to generate six filtered phylogenomic matrices consisting of data Citation: Larson, D. A., J. F. Walker, O. M. Vargas, and S. A. Smith. from 97 transcriptomes and genomes. Support for species relationships was inferred 2020. A consensus phylogenomic approach highlights paleopolyploid from multiple lines of evidence including shared gene duplications, gene tree conflict, and rapid radiation -
The Rhododendron Genome and Chromosomal Organization Provide Insight Into Shared Whole-Genome Duplications Across the Heath Family (Ericaceae)
GBE The Rhododendron Genome and Chromosomal Organization Provide Insight into Shared Whole-Genome Duplications across the Heath Family (Ericaceae) Valerie L. Soza 1,*, Dale Lindsley1,†, Adam Waalkes1,5, Elizabeth Ramage1, Rupali P. Patwardhan2, Joshua N. Burton2,6, Andrew Adey2,7,AkashKumar2,8, Ruolan Qiu2,†, Jay Shendure2,3,4, and Benjamin Hall1 1Department of Biology, University of Washington, Seattle, WA 2Department of Genome Sciences, University of Washington, Seattle, WA 3Brotman Baty Institute for Precision Medicine, Seattle, WA 4Howard Hughes Medical Institute, University of Washington, Seattle, WA 5Present address: Department of Laboratory Medicine, University of Washington, Seattle, WA 6Present address: Adaptive Biotechnologies, Seattle, WA 7Present address: Department of Molecular and Medical Genetics, Oregon Health and Science University, Portland, OR 8Present address: Department of Pediatrics, Stanford University, Palo Alto, CA †Retired. *Corresponding author: E-mail: [email protected]. Accepted: November 4, 2019 Data deposition: DNA sequencing data and final genome assembly for Rhododendron williamsianum have been deposited at NCBI BioProject under the accession PRJNA432092 and at CoGe under genome ID 51679. In the genome assembly, within each linkage group, all ordered scaffolds are given in their LACHESIS order, followed by all unordered scaffolds listed in descending order of length. Unclustered scaffolds are listed after linkage group 13 in descending order of length. The scripts used for genome assembly, annotation, and comparative genomics are available in the GitHub repository (https://github.com/vsoza/rhododendron-genome/). Synteny analyses within the Comparative Genomics (CoGe) platform can be obtained from the links given. Rhododendron delavayi: https://genomevolution.org/r/14kzh (whole-genome); Rhododendron williamsia- num: https://genomevolution.org/r/12blb, https://genomevolution.org/r/17qc6 (ordered scaffolds); Vaccinum corymbosum: https://genomevolu- tion.org/r/14oui. -
A New Phylogeny for the Genus Picea from Plastid, Mitochondrial, and Nuclear Sequences ⇑ Jared D
Molecular Phylogenetics and Evolution 69 (2013) 717–727 Contents lists available at SciVerse ScienceDirect Molecular Phylogenetics and Evolution journal homepage: www.elsevier.com/locate/ympev A new phylogeny for the genus Picea from plastid, mitochondrial, and nuclear sequences ⇑ Jared D. Lockwood a,1, Jelena M. Aleksic´ b,1, Jiabin Zou c,1, Jing Wang c, Jianquan Liu c, Susanne S. Renner a, a Systematic Botany and Mycology, University of Munich (LMU), Menzinger Strasse 67, 80638 Munich, Germany b University of Belgrade, Institute of Molecular Genetics and Genetic Engineering, 11010 Belgrade, Serbia c State Key Laboratory of Grassland Agro-ecosystem, School of Life Sciences, Lanzhou University, Lanzhou, Gansu 730000, China article info abstract Article history: Studies over the past ten years have shown that the crown groups of most conifer genera are only about Received 28 March 2013 15–25 Ma old. The genus Picea (spruces, Pinaceae), with around 35 species, appears to be no exception. In Revised 21 June 2013 addition, molecular studies of co-existing spruce species have demonstrated frequent introgression. Per- Accepted 5 July 2013 haps not surprisingly therefore previous phylogenetic studies of species relationships in Picea, based Available online 18 July 2013 mostly on plastid sequences, suffered from poor statistical support. We therefore generated mitochon- drial, nuclear, and further plastid DNA sequences from carefully sourced material, striking a balance Keywords: between alignability with outgroups and phylogenetic signal content. Motif duplications in mitochon- Molecular clocks drial introns were treated as characters in a stochastic Dollo model; molecular clock models were cali- Historical biogeography Mitochondrial nad introns brated with fossils; and ancestral ranges were inferred under maximum likelihood. -
Davidsonia a Journal of Botanical Garden Science Davidsonia Editor Iain E.P
Volume 20, Number 1 January 2010 Davidsonia A Journal of Botanical Garden Science Davidsonia Editor Iain E.P. Taylor UBC Botanical Garden and Centre for Plant Research University of British Columbia 6804 Southwest Marine Drive Vancouver, British Columbia, Canada, V6T 1Z4 Editorial Advisory Board Quentin Cronk Fred R. Ganders Daniel J. Hinkley Carolyn Jones Lyn Noble Murray Isman David Tarrant Roy L. Taylor Nancy J. Turner Kathy McClean Associate Editors Mary Berbee (Mycology/Bryology) Moya Drummond (Copy) Aleteia Greenwood (Art) Michael Hawkes (Systematics) Richard Hebda (Systematics) Douglas Justice (Systematics and Horticulture) Eric La Fountaine (Publication) Jim Pojar (Systematics) Andrew Riseman (Horticulture) Charles Sale (Finance) Janet R. Stein Taylor (Phycology) Sylvia Taylor (Copy) Roy Turkington (Ecology) Jeannette Whitton (Systematics) Davidsonia is published quarterly by the Botanical Garden of the University of British Columbia, Vancouver, British Columbia, Canada V6T 1Z4. Annual subscription, CDN$48.00. Single numbers, $15.00. All information concerning subscriptions should be addressed to the editor. Potential contributors are invited to submit articles and/or illustrative material for review by the Editorial Board. Web site: http://www.davidsonia.org/ ISSN 0045-09739 Cover: Pendulous blooms of Rhododendron cinnabarinum var. cinnabarinum Photo: Douglas Justice Back Cover: Plate from Flora Japonica, Sectio Prima, Philipp Franz von Siebold and Joseph Gerhard Zuccarini Image: Public Domain, courtesy of PlantExplorers.com Table of contents Editorial 1 Taylor Rhododendrons at UBC Botanical Garden 3 Justice Botanical history through 21 the names of paths, trails and beds in the University of British Columbia Botanical Garden: a case study Taylor and Justice Davidsonia 20:1 1 Editorial Collections Davidsonia is emerging from its second hiatus, the second in its 40 year history. -
Viii X the PHYLOGENETIC ANALYSIS of PICEA
THE PHYLOGENETIC ANALYSIS OF PICEA ORIENTALIS POPULATIONS FROM NORTHEASTERN TURKEY WITH RESPECT TO NON-CODING trn AND matK REGIONS OF CHLOROPLAST GENOME A THESIS SUBMITTED TO THE GRADUATE SCHOOL OF NATURAL AND APPLIED SCIENCES OF MIDDLE EAST TECHNICAL UNIVERSITY BY ALİ MURAT GÜLSOY IN PARTIAL FULFILLMENT OF THE REQUIREMENTS FOR THE DEGREE OF MASTER OF SCIENCE IN BIOLOGY x SEPTEMBER 2011 viii Approval of the thesis THE PHYLOGENETIC ANALYSIS OF PICEA ORIENTALIS POPULATIONS FROM NORTHEASTERN TURKEY WITH RESPECT TO NON-CODING trn AND matK REGIONS OF CHLOROPLAST GENOME submitted by ALİ MURAT GÜLSOY in partial fulfillment of the requirements for the degree of Master of Science in Biology Department, Middle East Technical University by, Prof. Dr. Canan Özgen Dean, Graduate School of Natural and Applied Sciences Prof. Dr. Musa Doğan Head of the Department, Biology Prof. Dr. Zeki Kaya Supervisor, Biology Dept., METU Examining Committee Members Prof. Dr. Musa Doğan Biology Dept.,METU Prof. Dr. Zeki Kaya Biology Dept., METU Assoc. Prof. Dr.Sertaç Önde Biology Dept., METU Assist. Prof. Dr. Fatih Temel Faculty of Forestry, Artvin Çoruh University Dr. Burcu Çengel Ministry of Forestry and Water Affairs, FTSTBRD, Ankara Date: 07.09.2011 ii I hereby declare that all information in this document has been obtained and presented in accordance with academic rules and ethical conduct. I also declare that, as required by these rules and conduct, I have fully cited and referenced all material and results that are not original to this work. Name, Last Name: ALİ MURAT GÜLSOY Signature : iii ABSTRACT THE PHYLOGENETIC ANALYSIS OF PICEA ORIENTALIS POPULATIONS FROM NORTHEASTERN TURKEY WITH RESPECT TO NON-CODING trn AND matK REGIONS OF CHLOROPLAST GENOME Gülsoy, Ali Murat M.Sc., Department of Biology Supervisor: Prof. -
Conservation in the City
University of Washington Botanic Gardens Conservation in the City An Assessment of the UWBG Collection at the WPA Ilana McPhee Calvert Drs. Kern Ewing, James Fridley, and Sarah Reichard, advisers 11.01.2012 [Type text] Contents Report …………………………….…………………………...…… 2 Bibliography ……………………………………………………….. 30 Appendices A. The Conservation Collection …………………….…….. i B. The Least-Concern Plants ………………..…………… x C. IUCN Criteria, version 2.3 (excerpt) .…………………. xxi D. IUCN Criteria, version 3.1 (excerpt)............................... xxv E. Inventory and Field Check Protocol …………………... xxxi F. Field Check Guidelines ……………………………….. xxxiii 1 Abstract In the face of continued habitat alteration and loss of species, ex situ conservation efforts are being reframed as more than just supporting acts to in situ projects. Botanic gardens in particular have emerged as significant resources for ex situ conservation. The University of Washington Botanic Gardens (UWBG) maintains a collection of woody plants at the Washington Park Arboretum (WPA). The UWBG’s Conservation Policy indicates that inventory and assessment of their plants of global conservation concern is to be conducted every 5 years, and yet this work has not been done since 2001. Goals of the 2012 assessment included: Identifying conservation species within the collection; noting the most recent available conservation category, criteria, and taxonomy for each species within the database; performing field checks of the individual plants to confirm health, location, and proper labeling; and a brief analysis of the updated collection. As expected, the number of species in the conservation collection has grown dramatically since 2001. This work has helped give an identity to the collection, and has clarified processes and resources to help manage the collection and make future assessments easier.