Fisheries Assessment and Management in Data-Limited Situations 213 Alaska Sea Grant College Program • AK-SG-05-02, 2005

Use of Quality Control Methods to Monitor the Status of Fish Stocks

James Scandol NSW Department of Primary Industries, Cronulla Fisheries Centre, Cronulla, New South Wales, Australia

Abstract Many fi sheries that are data-limited are also of low economic value. Therefore, not only are the fi sheries data-limited, but there are limited human resources available for undertaking stock assessment. Qualitative methods such as “eyeballing” the data are then often used to assess such systems. Quantitative methods need to be developed that are objective, but less demanding than dynamic stock assessment models. In particular, simple methods that can signal trends in empirical stock-status indica- tors need to be explored. One such approach is the use of quality control methods such as Shewhart, moving-average, and CUSUM (cumulative sum) control charts. Originally designed for industrial quality control, these methods can be parameterized to detect transient or persistent causes with specifi c false-positive and false-negative error rates. These signals can be interpreted within a managerial context as trigger refer- ence points. Results of a simulated study of yellowfi n bream (Acanthopagrus aus- tralis) stocks from New South Wales (Australia) are presented. Empirical stock-status indicators including catch, catch per unit eff ort, mean age, mean length, recruitment fraction, total mortality, and fi shery-indepen- dent surveys were processed using quality control methods. Performance of these indicators and algorithms were measured with receiver-operator- characteristic curves, which captured both false-positive and false-nega- tive error rates. Biomass surveys performed best, followed by mean age and length, and recruitment fractions. Commercial catch rates and catch had the worst performance but were still acceptable. Age-based total mortality performed poorly unless very large numbers of samples were taken. Potential applications of these methods include a rapid diagnostic tool in data-limited situations, development of empirical reference points, 214 Scandol—Quality Control Methods and empirical rule-based management systems. These methods are easily applied even when there is a short time-series of low-contrast data but a range of caveats must always be considered.

Introduction There is a wide range of quantitative methods to assess the status of a fi sh stock (Quinn and Deriso 1999) and predict the eff ect of alternative management choices (Hilborn and Walters 1992). Researchers working in data-limited fi sheries are, however, frequently frustrated when even simple methods such as biomass dynamic or delay-diff erence models cannot be satisfactorily calibrated to observations. These models gener- ally fail because of insuffi cient contrast, or information content, within the available data sets. Another issue that can dominate data-limited stock assessment is lack of analytical expertise. Fisheries of low economic value are frequent- ly both data-limited and expertise-limited because of small budgets for research, monitoring, and assessment. This constrains what can practi- cally be achieved for many stocks. For example, issues associated with low-contrast data can be overcome using Bayesian methods that “borrow” information from other fi sheries (Punt and Hilborn 1997). Expertise to apply such methods is expensive and unlikely to be used for low-value fi sheries. When data are limited and available expertise is constrained, fi sheries are often assessed by “eyeballing” graphs of empirical indicators (such as commercial catch per unit eff ort [CPUE]). Anybody who has worked in data-limited fi sheries must have seen this happen, and given the ef- fi ciency of the human eye for identifying patterns, this is neither surpris- ing nor undesirable. Such methods are, however, somewhat subjective. Given the importance of developing objective and transparent rules for managing fi sheries this approach could be criticized. This paper attempts to identify a middle ground between “eyeball- ing” data, and calibrating and applying sophisticated dynamic models. Fisheries management systems have developed that utilize results from stock assessment via indicators (such as fi shing mortality F) and biologi- cal reference points (such as F0.1). Relationships between indicators and biological reference points are then used to signal particular management actions. Stock assessment therefore involves coupling data analysis and modeling with a signaling system for management. Signaling systems are a core feature of statistical quality control (QC), where indicators are monitored to fl ag uncharacteristic values or an undesirable trend in a sequence of values. A common application is to ensure that a manufactur- ing facility is producing goods with consistent characteristics. QC algo- rithms are simple and numerically stable but cannot, of course, provide the same insight into a fi shery that a dynamic model might achieve. This Fisheries Assessment and Management in Data-Limited Situations 215 paper examines the application of QC methods as a signaling system for fi sheries management. Indicators derived directly from data would be analyzed (very simply) and signals from these indicators reported. Qual- ity control methods may help fi ll the very large gap between “eyeballing” data and developing complex stock assessment systems. This paper makes an important diff erentiation between empirical and estimated indicators of stock-status. An “empirical indicator” is one that is calculated directly from a specifi c set of raw data and, in the process of calculation, may use one or two parameters that can be easily defi ned. In contrast, an “estimated indicator” represents a fi shery variable of interest that is derived from a range of data sets and is dependent upon addi- tional parameters that may or may not be easily defi ned. For example, raw commercial CPUE and mean age are empirical indicators, while biomass and fi shing mortality are estimated indicators. Empirical indicators would usually be calculated with a closed algorithm such as a database query, while estimated indicators frequently require iterative nonlinear algo- rithms. An exception to these generalities is the use of iterative general linear modeling algorithms to estimate an index-of-abundance. Much fi shery management science is oriented around the calculation and interpretation of estimated indicators. In data-limited situations where the calculation of estimated indicators is unreliable, the initial focus should be upon empirical indicators (also see Die and Caddy 1997, Caddy 1999). Several recent studies have measured the performance of empirical indicators with methods not dissimilar to those presented here. Punt et al. (2001) evaluated mean length, mean weight, and CPUE data collected in the east Australian broadbill swordfi sh fi shery. Trenkel and Rochet (2003) completed a sophisticated power analysis on a range of stock-status indicators, including empirical indicators such as mean age and total mortality. Rochet and Trenkel (2003) extended these ideas to indicators of community structure. Scandol (2003) estimated the per- formance of landed catch as an indicator with CUSUM (cumulative sum, Page 1961) quality control methods. Previous research focused upon indicators, while this study examined the interpretation and performance of these indicators using methods from statistical quality control. Given the recent emphasis on the development of indicators for sustainable fi sheries management (Garcia and Staples 2000), evaluation of statistical methods to interpret these indicators should be a research priority.

Materials and methods Overview This study used an operating model to generate observations that were transformed into nine stock-status indicators. Times-series of these in- dicators were then analyzed for transient and persistent causes (defi ned below) using three quality control methods: Shewhart control charts, 216 Scandol—Quality Control Methods

CUSUM control charts, and moving-average Shewhart control charts. Signals from these quality control (QC) methods were then compared to the known state of the simulated biomass, and the sensitivity and speci- fi city of these algorithms determined for each of the nine indicators. All of these QC methods required one or two parameters to specify an out- of-control observation.

The operating model The operating model is detailed in the Appendix. The model was an age-structured population model for yellowfi n bream (Acanthopagrus australis), a common species harvested off the coast of eastern Australia (Yearsley et al. 1999). The model was parameterized using data from Gray et al. (2000). A small fi shery was modeled that included the likely variation in catchability, applied eff ort, and recorded eff ort among 50 cpue commercial fi shers. Simulated indicators for CPUE (Ut ) and commercial catch (Ct) were generated by the model, and an unbiased indicator that survey represented the surveyable stock (Ut ) was also included. Each year a random sample of fi sh from the simulated commercial fi shery was taken and six other indicators were calculated: mean age age len ( t ); mean length ( t ); total mortality estimated with catch-curve age analysis from the same of ages (Zt ); total mortality using the Beverton len and Holt method from length statistics and growth characteristics (Zt ); and recruitment fractions (the fraction less than a threshold length or age len age) from age (θt ) or length (θt ) frequency distributions. Equations for these indicators are provided in the Appendix. More sophisticated analyses were obviously possible with these simulated data, but the aim was to capture the types of simple calculations that could be completed in a data-limited and expertise-limited environment. The temporal sequencing of the operating model was important and there were four distinct phases. First, the model was run without any variation (but with the simulated fi shery operating) until the exploitable biomass converged to an equilibrium value (Beq). Second, the model was run for a further 30 years with variation to stabilize any transient pro- cesses. Third, the model entered a ten-year phase where historical data were collected and indicators calculated. Fourth, the model entered a ten-year future phase where additional data were collected and indica- tors calculated. Simulated observations from the future phase were used to measure the performance of the QC algorithms, and observations from the historical phase were used to provide a reference for the QC algorithms. During the future phase, or the historical and future phases, various deleterious impacts were randomly imposed upon the fi shery. These impacts aff ected recruitment (decreased); fi shing eff ort (increased); catch- ability (increased); or natural mortality (increased). The maximal rate of an impact was a 20% change in a parameter value per year. The exact Fisheries Assessment and Management in Data-Limited Situations 217 magnitude and type of an impact aff ecting a simulation were randomized, but these impacts were manipulated by two parameters: the probability of an impact occurring during the historical and future phases (Phist); and the probability of an impact occurring during the future phase only (Pfutr). This representation was required to generate scenarios where the fi shery was historically unstable as well as stable.

The quality control algorithms The quality control literature uses the term “transient cause” to describe a short-term infl uence that eff ects one or two consecutive observations in a time-series, and the term “persistent cause” to describe a long-term infl uence that distorts a process for a longer period and is responsible for a trend. Identifi cation of an uncharacteristic value within a time-series is a relatively simple statistical problem and is the basis of the Shewhart control chart (Derman and Ross 1997). Processes are considered “in-con- trol” if the observed mean of a consecutive set of observations is within a specifi ed confi dence interval. If the mean falls outside that interval, the process is considered “out-of-control.” Shewhart control charts are very eff ective at detecting transient causes but less eff ective for persistent causes because they have no memory of past events. Observations at one time-step are evaluated independently of data from the previous time- step. This defi ciency can be circumvented by a series of runs rules (e.g., three out of four signals in a row indicates a persistent cause) or the use of control charts with a memory of past events such as the cumulative sum or moving-average control chart. Cumulative sum control methods are eff ective at detecting persistent changes in observed processes (Page 1961). The underlying algorithm is a simple cumulative sum of the deviation of observations from the mean (Hawkins and Olwell 1997). An alternative to CUSUM charts for detecting persistent causes is the moving-average control chart. The three QC methods evaluated each required the indicators to be standardized (z transformed) using a control mean and standard devia- tion. This control mean and standard deviation could be specifi ed as a managerial goal but could also be estimated from historical observations of that indicator. After all nine indicators were calculated for the historical and future phases of the simulation, they were standardized using data from the historical phase, and the QC algorithm applied to each of the ten future years. For each future year the algorithm generated a signal if an out-of-control process was detected. This signal was compared with the ex actual system state of exploitable biomass at time t (Bt ) defi ned by the biological reference point (φBeq). If the exploitable biomass was less than this reference point and the QC algorithm generated an out-of-control signal then a true-positive result was registered. Other combinations of ex (Bt < φBeq) and QC signal results registered true-negative, false-positive, and false-negative results. These results were incremented for the ten 218 Scandol—Quality Control Methods years in the future phase of the simulation and the simulation replicated 1,000 times. This enabled an estimation of the probability of true-posi- tive, true-negative, false-negative, and false-positive results of the QC algorithm for a particular set of parameter values. Due to dependencies among the future years these were not true probabilities. This could have been avoided by using diff erent replicate simulations for each of the future years, but this would be inconsistent with the use of the scheme for a particular realization of a stochastic process (as would occur in any application of these methods).

Implementation of the QC algorithms 1. Shewhart Control Chart. This was the simplest to apply and required only a single control parameter, the decision interval (h). A signal is

raised at time t if |xt|>h, where xt is value of the standardized indica- tor at time t.

2. Moving-Average Control Chart. An incremental development to the Shewhart control chart is the calculation of a moving-average of the last w observations of the indicator, and then application of a Shewhart control chart to these smoothed values. If the absolute value of the smoothed indicator is greater than the decision interval then a signal is raised.

3. CUSUM Control Chart. The fi nal QC method examined was the cumu- lative sum or CUSUM control chart. This method calculated an upper + + + or lower CUSUM (− φ) with the following equations: φt = max (0, φt –1 − – + xt −k) and φt = min(0, φt–1 + xt +k), where xt is value of the standard- ized indicator at time t and k is the chart tolerance (or variation that +/− is ignored). These iterative equations were initialized using φ0 = 0 +/− and when |φt | >h an out-of-control signal was raised. Both the moving-average chart and the CUSUM chart required ad- ditional parameters (w and k respectively), but these algorithms were more eff ective at signaling persistent causes because they captured the memory within a sequence of indicator values.

Measurement of performance and sensitivity analysis Evaluation of the sensitivity and specifi city of any type of test can be used to assess the performance of that test. The more sensitive a test, the more reliable it is at signaling an anomalous situation. The more specifi c a test, the more reliable it is at not signaling a situation that is not anomalous. These are well-established concepts in health research (Sackett et al. 2000, Gigerenzer 2002) but do not appear to have been used in the fi sheries literature. Sensitivity and specifi city are conditional probabilities that are defi ned: sensitivity = P(T +)/[P(T +) + P(F −)] Fisheries Assessment and Management in Data-Limited Situations 219

specificity = P(T −)/[P(F +) +P(T −)] where P(T +)is the probability of a true-positive result and equivalent nota- tion applies to the other terms. Diff erent values of the decision interval h will yield diff erent values of sensitivity and specifi city for a test and illustrate the trade-off between these characteristics. A plot of the comple- ment of the specifi city against the sensitivity over a range of decision intervals (h) creates a receiver-operator-characteristic (ROC) curve. The ROC curve is a valuable diagnostic tool because it enables an objective comparison of various indicators and QC algorithms. In this study the overall performance of an indicator and a QC algorithm is mea- sured as the area under the ROC curve ( ). This area was calculated us- ing numerical integration. This performance measure had the additional advantage of integrating-out a nuisance parameter, the decision internal h, from the analysis. The ROC curve was also used to determine the value of the decision interval that yielded a threshold value of sensitivity, and estimate the specifi city at that point. These calculations were completed using linear interpolation of available information from the ROC curve. Sensitivity analyses were also completed upon: the number of fi sh sampled for age- and length-based indicators; the coeffi cient of variation of recruitment; and the steepness of the stock-recruitment relationship. Consideration was also given to the CUSUM tolerance parameter k, the moving-average parameter w, the reference point φ, and the probability of an historical impact in the fi shery Phist. In all cases the sensitivity analyses are presented in terms of the overall performance (Ω).

Results Illustrative results from a single replicate

Figure 1 includes correlation plots of the Bt/Beq versus the indicator values from a single replicate simulation of the operating model. Figure 1a, 1b, and 1c illustrate the age-based, length-based, and abundance indicators respectively. The replicate was a scenario with no historical impacts (Phist = 0.0) and surety of future impacts (Pfutr = 1.0). The cluster of points at Bt/Beq ≈ 1.0 illustrates the behavior of the indicators during the historical equilibrium phase and the points when Bt/Beq < 1.0 show the response of the indicators as the biomass collapses. As expected, there was a decrease in mean length and age as well as an increase in total mortality (Fig. 1a and 1b). The recruitment fraction indicators increased as the stock collapses. Within the abundance indicators there was strong survey correlation with the survey indicator (Ut ), but commercial catch (Ct) cpue and Ut did not indicate biomass in a robust manner (Fig. 1c). age Results for the indicator mean age ( t ) generated from this repli- cate were analyzed with the three QC algorithms examined in this paper. age Figure 2a plots t (unstandardized and standardized using data from 0 220 Scandol—Quality Control Methods

6 1.0 (a) MM M M MM M 5 R M M M M M M 0.8 R M

M 4 R M M 0.6

3 R M R

R M 0.4 R M R RR R 2 R R R RRR R (R) Age Recruitment Fraction 0.2 1 Z Z Z Z Z Z Z Z Z Z ZZ ZZZZ Z

(Z) Total Mortality (/year) or (M) Mean Age (years) (Z) Total 0 0.0 26 1.0

MMM M (b) M M M MMM M 24 M M M 0.8

22 M

M M 20 R 0.6 R

6 R 0.4 R 4 R Z R R R RR R R R R RRR R 2 Z 0.2 (R) Length Recruitment Fraction Z Z Z Z Z Z Z ZZZ Z 0 ZZZZZ Z (Z) Total Mortality (/year) or (M) Mean Length (cm) (Z) Total 0.0 2.5 140

C (c) C C C U U U 120 2.0 C U U U C U C C C UU 100 U 1.5 U U U CC CU U C U C C C 80 U C C S S 1.0 S S S (C) Catch (t) U SS S S C S S 60 S U S 0.5 S (U) CPUE (t/eu) or (S) Survey(t/su) C 40 U S S CU S S S 0.0 20 0.0 0.2 0.4 0.6 0.8 1.0

B/Beq

Figure 1. Relationship between the empirical indicators and Bt /Beq. (a) age age Age-based indicators Zt (symbol Z) and t (symbol M) are age plotted on the left axis scale; θt (symbol R) is plotted on the len right axis scale. (b) Length-based indicators Zt (symbol Z), len len t (symbol M), and θt (symbol R) are plotted in an analogous survey fashion to those on (a). (c) Abundance indicators Ut (symbol cpue S), Ut (symbol U), and Ct (symbol C). Unit notes: Ct (metric cpue survey tons or t), Ut (tons per eff ort unit or t/eu), and Ut (tons per survey unit or t/su). Fisheries Assessment and Management in Data-Limited Situations 221

6 5 5 0 4 3 -5

2 -10 1

or Mean Age (years) -15

eq 0 Standardized Mean Age

B/B -20 0 5 10 15 20 2

0

-2

-4 Control Value -6

-8

-10 0 5 10 15 20

age Figure 2. Illustration of quality control charts. (a) Mean age ( t , solid line) and B/Beq (solid line with symbols) plotted against time. Standard- ized mean age (dotted line) is also included. Note that B/Beq ≈ 0.5 at 15 years. (b) Control charts: Shewhart (dotted line); three year φ+ moving-average Shewhart (dashed line); CUSUM (k = 1.0, φt heavy φ− dashed line, t heavy solid line). Signals are generated each time a control value exceeds + – h, i.e., + –1 . The CUSUM method generated the strongest signal by year 15. 222 Scandol—Quality Control Methods

to 10 years) along with Bt/Beq. The reference point for this analysis was Bt/Beq = 0.5, and the biomass fell below this value after 15 years. Before this time signals were false-positive and signals on or after 15 years were true-positive. Figure 2b provides the control charts for the standardized age t using a decision interval h of ±1. The Shewhart chart and moving- average (with a three year window) generated four false-positive signals before any impacts occurred (at ten years). The CUSUM chart (using k = 1.0) generated a false-positive signal at 7 years and 14 years but gave the strongest signal thereafter.

Comparison of QC algorithms Replicate simulations of the above algorithm enabled the estimation of an ROC curve for a particular indicator and QC algorithm. Figure 3 il- age survey lustrates these ROC curves for t , Ct and Ut using a CUSUM control chart (k = 1.0). When the decision interval h is 0 then all curves have a sensitivity of 1 and a specifi city of 0. As h increased, the sensitivity decreases and specifi city increases. Indicators and control schemes that are both sensitive and specifi c will have the greatest area under the curve ( ). The ROC curve was also used to determine the specifi city of an indica- tor at a certain value of sensitivity (or vice versa) as well as the value of the decision interval (h*) that obtained these values. Table 1 summarizes the performance of indicators for Shewhart, CUSUM (k = 0.5, 1.0, 1.5) and moving-average control charts (with the average calculated over 2, 3, and 4 years). In general the choice of control chart did not have a large ef- fect upon performance of an indicator, though the CUSUM charts always performed marginally better. This table also enables a comparison of survey age indicators. As expected, Ut had the best performance followed by t , len len len len age t , Zt (derived directly from t ),θt ,θt (all these age- and length- based indicators had very similar performance). Commercial catch rates cpue (Ut ) averaged lower performance across all QC methods than these age previous indicators but were superior to Zt and Ct. The number of age samples taken (1,000) was not suffi cient for a precise estimate of total len mortality. Ironically, Zt was biased, but was a superior indicator to its age-based counterpart within this framework. The table also presents the value of h* and the test specifi city when the sensitivity is 0.8. QC algorithms are commonly applied by defi ning a fi xed sensitivity (true-positive rate). The decision interval required for such sensitivity is then estimated along with the test specifi city. In time-series models, where assumptions of statistical independence be- tween observations are invalid, simulation can be used to estimate these threshold values (otherwise analytical methods are available, Hawkins and Olwell 1997). The h* values in Table 1 provide some insight in the decision intervals that could be used for the three QC algorithms and how specifi c the signals would be. These numerical values are, however, only valid for this simulated fi shery. Note that for the better performing Fisheries Assessment and Management in Data-Limited Situations 223

1.0 h Increasing values of

0.8

0.6

0.4 Sensitivity

0.2

0.0

0.0 0.2 0.4 0.6 0.8 1.0

1-Specificity

Figure 3. Receiver-operator-characteristic (ROC) curves for the CUSUM survey (k = 1.0) scheme for the empirical indicators: Ut (solid line); age t (dashed line); and Ct (dotted line). The area under the curve for a particular indicator was used as the performance measure (Ω) in this study. Note that as the decision interval (h) increased, the sensitivity decreased and the specifi city increased (following the ROC curve as annotated).

age indicators such as t , the h* values are larger and are associated with greater specifi city than with the inferior indicators such as Ct. Reference points, eff ect size and eff ect timing

The reference point used for this analysis (by default 0.5 Beq or φ = 0.5) had a crucial role in this analysis and was analogous to an eff ect size in power analysis. Larger defi ned eff ects will be easier to accurately signal. Performance of indicators as a function of φ was estimated using the CUSUM scheme (k = 1.0) and the results plotted on Fig. 4a. As the eff ect size decreased (larger values of φ) the performance of all indica- tors decreased except surveys that continued to improve until φ = 0.8. Large eff ects degraded the performance of survey indicator because of poor specifi city (false-positive rate). Performance of the indicator total 224 Scandol—Quality Control Methods

Table 1 Performance (Ω) of empirical indicators for Shewhart, CUSUM, and moving-average control charts. Values of the specifi city* and decision interval (h*) at 80% sensitivity are also tabulat- ed.

CUSUM Moving-average

Indicator Metric Shewhart k = 0.5 k = 1.0 k = 1.5 w = 2 w = 3 w = 4

age t Ω (%) 93 94 94 94 93 92 91 h* 5.8 11.6 9.3 7.4 6.1 6.0 5.9 specifi city* (%) 94 94 94 94 93 92 90

age θt Ω (%) 92 93 93 92 91 91 90 h* 4.1 7.8 5.7 4.2 4.2 4.1 4.1 specifi city* (%) 93 92 92 92 91 89 87

age Zt Ω (%) 77 83 82 80 80 79 79 h* 0.8 1.7 0.4 0.1 1.1 1.3 1.4 specifi city* (%) 49 68 61 55 55 57 56

Ct Ω (%) 77 85 83 81 77 77 77 h* 1.4 3.5 1.8 0.7 1.7 1.9 2.1 specifi city* (%) 54 71 68 65 54 55 55

cpue Ut Ω (%) 88 90 90 89 87 85 84 h* 2.4 4.2 2.6 1.5 2.8 2.7 2.7 specifi city* (%) 84 83 83 82 79 75 72

len t Ω (%) 93 94 94 93 92 91 90 h* 6.2 11.9 9.7 8.0 6.1 5.7 5.5 specifi city* (%) 93 93 93 93 92 90 89

len θt Ω (%) 92 93 93 93 91 91 90 h* 5.0 9.5 7.4 5.9 4.8 4.6 4.5 specifi city* (%) 92 92 92 93 91 89 87

len Zt Ω (%) 93 94 94 94 93 92 91 h* 7.4 13.7 11.4 9.8 7.1 6.5 6.3 specifi city* (%) 94 94 94 94 93 92 90

survey Ut Ω (%) 95 95 95 95 94 94 94 h* 11.8 > 30.0 > 30.0 28.3 15.7 18.4 20.4 specifi city* (%) 91 < 93 < 94 94 91 91 92 Fisheries Assessment and Management in Data-Limited Situations 225

1.00 (a)

S S U S S 0.95 U S M R MUR M SR M M R R M U R C M M S R

Ω 0.90 U R Z M

C Z U S R

C Z U 0.85 U C Z C U C C CC S Z

0.80 Z 0.0 0.2 0.4 0.6 0.8 1.0 φ 1.00 (b)

C U

U S SS 0.95 S S U M M M R MMM R R R R S M R R R R U C R M U S C U M U U S R Ω 0.90 UUU

Z Z S S

Z S C M Z Z 0.85 Z C C C CCC M Z C Z Z Z

0.80 0.0 0.2 0.4 0.6 0.8 1.0

Phist

Figure 4. (a) Performance of indicators as a function of the refer-

ence point φBeq. Most indicators degrade as the eff ect size decreases. (b) Performance of indicators as a function of the probability of a historical impact Phist. When Phist ≥ 0.4 the performance of all indicators became destabilized. age Length-based indicators performed similarly to t and θage survey t in both analyses. Symbols used: Ut (symbol S), cpue age age Ut (symbol U), Ct (symbol C), Zt (symbol Z), t θage (symbol M), and t (symbol R). 226 Scandol—Quality Control Methods

age mortality (Zt ) degraded badly when attempting to detect small changes to the underlying stock. The controlling mean and standard deviation were calculated using observations from the historical years. Simulations to this point have assumed there were no impacts during this time (Phist = 0.0). Figure 4b illustrates the eff ect on indicator performance when there have been changes to the stock during the historical years. Up to Phist ≈ 0.4 there was little eff ect on indicator performance, however; beyond this value performance changed in unpredictable ways. For example, the perfor- survey cpue mance of Ut decreased but that of Ut increased. Large amounts of historical variation will degrade the performance of all indicators using this scheme. These analyses on φ and Phist were only completed for the CUSUM scheme, but the magnitude of the eff ects was far greater than the diff erences between the three QC algorithms considered. Similar patterns would be expected for the Shewhart and moving-average methods.

Sensitivity analysis Using the CUSUM (k = 1.0) algorithm, results for four parameters are presented (Table 2): the number of fi sh aged; the number of fi sh mea- sured; recruitment variability; and the steepness of the stock-recruitment parameter. Increasing the numbers of fi sh aged and measured increased the precision and accuracy of all of the age- and length-based indicators len respectively with the exception of Zt (which was always biased). There was, however, small marginal benefi t from increasing samples from 1,000 to 10,000 fi sh. Most of increase in performance was obtained within age 100~200 fi sh for all indicators except Zt , which continued to increase in performance up to 10,000 fi sh. Actual fi sh populations would be expected to illustrate much greater variability in age and length structure than this model (which was not spatially structured and used an annual time- step). Nevertheless, these age- and length-based indicators appeared to perform very well with eff ective sample sizes in the hundreds rather than thousands of fi sh. The small (1%) performance variation in the indicators that were not age- or length-based refl ected the random variation from diff erent sequences of random numbers used in the simulations. Table 2 also presents a sensitivity analysis on recruitment dynam- ics. Performance of indicators was extremely robust to changes in the steepness of the stock-recruitment parameter. Only very large values of the coeffi cient of variation of recruitment (50%) appeared to degrade the performance of these indicators. Other sensitivity results (not presented) were very predictable. For example, increasing the variability of surveys survey caused a marginal decrease in performance of Ut . The results pre- sented appeared to be robust to reasonable changes in the parameter values. Fisheries Assessment and Management in Data-Limited Situations 227

Table 2. Sensitivity analysis of the performance (Ω in %) of empirical indicators using the CUSUM scheme.

Number of fi sh Steepness of sampled for age- and Coeffi cient of variation stock-recruitment length-based indicators of recruitment relationship

10 100 1,000 10,000 0.01 0.1 0.2 0.5 0.55 0.75 0.95

age t 78 92 94 95 94 94 92 86 93 94 94 age θt 75 90 93 94 94 93 90 82 92 93 93 age Zt 57 77 82 90 82 82 81 75 82 82 82

Ct 83 83 84 83 83 83 82 77 83 83 83 cpue Ut 89 90 90 90 90 90 89 83 90 90 90 len t 76 90 93 94 94 94 92 85 93 94 94 len θt 71 88 92 94 94 93 91 83 92 93 93 len Zt 78 90 93 94 94 94 92 86 93 94 94 survey Ut 95 96 96 95 95 95 95 94 95 95 95

Discussion The lack of contrast in data is a major stumbling block for stock as- sessment in data-limited fi sheries. In such situations, it may not be practicable to estimate fi shing mortality rates or stock biomass from an index-of-abundance, landings, and age- or length-composition data sets. Alternative methods for identifying and signaling important trends in empirical stock-status indicators require examination. This study tested the application of quality control algorithms to detect signals in such empirical indicators and showed that QC-based systems using indicators of average age and length perform exceptionally well, with the integrated area under an ROC curve of between 90 and 95% under a wide range of situations. Indicators based upon recruitment fractions had similar per- formance. Averages can be calculated precisely with hundreds (rather than thousands) of samples, so detection of a persistent shift in these statistics is feasible. Mean lengths and ages also dampen transient sig- nals resulting from variation in recruitment. Empirical indicators such as CPUE and catch performed worse than age- and length-based indicators, though a theoretical CPUE indicator (the ratio of actual catch and actual eff ort, rather than recorded eff ort) performed similarly to surveys. Total mortality estimated from catch-curve analysis was not a robust indica- tor unless the estimates used a very large sample size (many thousands of fi sh). Note that in real-world studies, there will be the usual challenge of obtaining representative samples of fi sh age and length. The above 228 Scandol—Quality Control Methods estimates of sample size have not considered spatial and within-year variation, both of which are likely to substantially increase the number of samples actually required. There are three potential applications of the work presented here: (1) a simple signaling system for empirical indicators to prioritize research and management; (2) approximate calibration of observations to dynamic models and the use of these, along with a specifi cation of required sen- sitivity/specifi city to determine decision intervals and reference points; and (3) use of QC algorithms within decision-rules to ensure sustainable harvesting rates. These applications are discussed in turn. Empirical indicators lie at the base of any type of stock assessment. In most cases (even within data-limited situations) there will be suffi cient information on catch, CPUE, or length-composition to estimate a control- ling mean and standard deviation. Estimation of these statistics, even from 2-3 years of data, will enable the standardization of new observa- tions. QC algorithms could then be applied as an objective procedure to signal if the most recent observation is uncharacteristic and action should be taken. This approach is at the heart of any monitoring system. In most situations there will be ongoing uncertainty about the value of the decision interval h and the appropriateness of the controlling mean and standard deviation. If the recent historical state of a fi shery is severely depleted, then there will be risks associated with using such information to estimate the controlling mean and standard deviation. In such cases, the decision interval could be asymmetrical, so that a signal is generated if there is any decrease in an indicator such as mean length or CPUE. Results presented in Table 1 provide some guidelines on the deci- sion interval values (for a sensitivity of 80%) but these vary greatly ac- cording to the indicator and the desired sensitivity. Rather than provide numerically specifi c recommendations about the application of these methods, the author recommends that interested readers compile rel- evant examples from their fi sheries in a simple electronic spreadsheet to understand the trade-off s that occur when using these algorithms. Specifi cation of the decision interval will depend upon the managerial context (what are the actions resulting from a signal), attitudes toward (and consequences of) false-positive and false-negative signals, and the historical context of the fi shery (see above). In many data-limited cases, it is likely that the decision interval will need to be negotiated among the stakeholders of the fi shery. Such an approach will certainly not be the basis of a rigorous stock assessment but will enable rapid identifi cation of stocks where things are starting, or continuing, to go astray. Inferences will also be much stronger if there are two or more independent empirical indicators available (also see Caddy 1999, Scandol 2003). The simplicity of these schemes would enable them to be integrated into the reporting algorithms of database management systems that would (or should) be used to store the data required to compile empirical indicators. Fisheries Assessment and Management in Data-Limited Situations 229

The second, and much more technically sophisticated, application will require a meaningful calibration of a dynamic model to a particular fi shery. This was the general approach taken by Punt et al. (2001). Once an estimated relationship between an empirical and estimated indicator is available, then the standard limit/target biological reference points

(BRPs) such as B/B0 = 0.2 or F0.1 can be converted to values of an empiri- cal indicator or indicators. The degree of precaution or risk-aversion to be applied with the management system then could be expressed via the sensitivity of the test and the corresponding value of the decision inter- val h. This signal system could then replace a BRP target/limit system. The main advantage that such a scheme could have over standard BRP management systems is improved transparency. The third potential application of QC methods is within the manage- rial decision-rules that are now advocated by some fi shery scientists (e.g., Starr et al. 1997, Hilborn 2002). Starr et al. (1997) used rules based upon moving-averages of CPUE to adjust the total allowable catch in a fi shery to support sustainability. Similarly, the values from a CUSUM chart could be used to adjust fi shing mortality using either input or output controls. Schemes that use control loops based upon indicators derived from age- or length-composition data should be particularly valuable as they will be more robust to changes in catchability. CUSUM charts are likely to be very eff ective because they deliver very strong signals if a persistent impact occurs (see Fig. 2b). Systems could be designed that are robust to uncertainties in most parameters. Many fi sheries management agencies that are dealing with data-lim- ited fi sheries have limited human resources to develop sophisticated stock assessments. There will, however, often be statutory requirements for performance reporting of fi sheries. Simple graphical charts of empiri- cal indicators will therefore be a mandatory and achievable goal. Charts are also a transparent and rapid method of communication. The research presented here introduces some simple ideas from the statistics of qual- ity control to assist in the quantitative interpretation of these charts of empirical indicators. Such methods can be applied in a very simple man- ner but more sophisticated extensions are also feasible.

Acknowledgments The author would like to thank Geoff Liggins and two anonymous review- ers for their valuable comments on this manuscript. Financial support from the Australian Centre for International Agricultural Research (ACIAR) enabled the author to present this paper in Anchorage, Alaska. 230 Scandol—Quality Control Methods

References Caddy, J.F. 1999. Deciding on precautionary management measures for a stock based on a suite of limit reference points (LRPs) as a basis for a multi-LRP harvest law. NAFO Sci. Counc. Stud. 32:55-68. Derman, C., and S.M. Ross. 1997. Statistical aspects of quality control. Academic Press, London. 200 pp. Die, D., and J.F. Caddy. 1997. Sustainable yield indicators from biomass: Are there appropriate reference points for use in tropical fi sheries? Fish. Res. 32:69- 79. Garcia, S.M., and D.J. Staples. 2000. Sustainability indicators in marine capture fi sheries: Introduction to the special issue. Mar. Freshw. Res. 51:381-384. Gigerenzer, G. 2002. Reckoning with risk: Learning to live with uncertainty. Allen Lane, London. 310 pp. Gray, C.A., B.C. Pease, S.L. Stringfellow, L.P. Raines, B.K. Rankin, and T.R. Walford. 2000. Sampling estuarine fi sh species for stock assessment. NSW Fisheries, Cronulla, Australia. 196 pp. Hawkins, D.M., and D.H. Olwell. 1997. Cumulative sum charts and charting for quality improvement. Springer, New York. 247 pp. Hilborn, R. 2002. The dark side of reference points. Bull. Mar. Sci. 70:403-408. Hilborn, R., and C.J. Walters. 1992. Quantitative fi sheries stock assessment: Choice, dynamics and uncertainty. Chapman and Hall, London. 570 pp. Page, E.S. 1961. Cumulative sum control charts. Technometrics 3:1-9. Punt, A.E., and R. Hilborn 1997. Fisheries stock assessment and decision analysis: The Bayesian approach. Rev. Fish Biol. Fish. 7:35-63. Punt, A.E., R. Campbell, and A.D.M. Smith. 2001. Evaluating empirical indicators and reference points for fi sheries management: Application to the broadbill swordfi sh fi shery off Eastern Australia. Mar. Freshw. Res. 52:819-832. Quinn, T.J., and R.B. Deriso. 1999. Quantitative fi sh dynamics. Oxford University Press, New York. 542 pp. Rochet, M.-J., and V.M. Trenkel. 2003. Which community indicators can measure the impact of fi shing? A review and proposals. Can. J. Fish. Aquat. Sci. 60:86-99. Sackett, D.L., S.S. Straus, W.S. Richardson, W. Rosenberg, and R.B. Haynes. 2000. Evidence-based medicine: How to practice and teach EBM. Churchill Living- stone, London. 261 pp. Scandol, J.P. 2003. Use of cumulative sum (CUSUM) control charts of landed catch in the management of fi sheries. Fish. Res. 64:19-36. Starr, P.J., P.A. Breen, R. Hilborn, and T.H. Kendrick. 1997. Evaluation of a manage- ment decision rule for a New Zealand rock lobster substock. Mar. Freshw. Res. 48:1093-1101. Fisheries Assessment and Management in Data-Limited Situations 231

Trenkel, V.M., and M.-J. Rochet. 2003. Performance of indicators derived from abundance estimates for detecting the impact of fi shing on a fi sh community. Can. J. Fish. Aquat. Sci. 60:67-85. Yearsley, G.K., P.R. Last, and R.D. Ward (eds.). 1999. Australian seafood handbook: An identifi cation guide to domestic species. CSIRO Marine Research, Hobart. 461 pp. 232 Scandol—Quality Control Methods

Appendix: The operating model Simulations were completed using the following age-structured model. Parameter values were, where possible, estimated from observations of yellowfi n bream (Acanthopagrus australis) from Gray et al. (2000) or given assumed values. Default values of these parameters are given below. Av- erage individual fi sh length (cm) at age a was represented with:

la29.exp. 0 1 0 36() 1 a = {}−−⎣⎡ + ⎦⎤

–5 3.0 Lengths were converted to weights (in kg) with wa = 2.48×10 la . All selectivity and maturity schedules were based upon the logistic func- tion: −1 ⎡ ⎛ ()xx− ⎞ ⎤ Λ(,xx , x )=+⎢119 exp−ln( ) 50 ⎥ 50 95 ⎜ ()xx⎟ ⎣⎢ ⎝ 95− 50 ⎠ ⎦⎥ len Vulnerability at length was vl = Λ(l, 24.4 cm, 29.4 cm); vulner- age ability at age was va = Λ(a, 4.7 year, 8.8 year); maturity at age was age ma = Λ(a, 3.7 year, 5.3 year); and for surveys the vulnerability at age surv was va = Λ(a, 0.5 year, 1.0 year). Exploitable and spawning biomass were respectively represented with: A A BNvwex age age and BNmwsp age age . t = ∑ at, a a t = ∑ at, a a a=0 a=0 The maximum number of age classes (A) was 20 years and no “plus group” was included in this model. Standard deviation of length at age

was σa = 1.9+0.1a (cm) and the elements within the age-length key were calculated with l+ 2 1 ⎡−−()xlj ⎤ Pij, = ×exp ⎢ ⎥dx . ∫ 2 2()σ 2 l− πσj ⎣⎢ j ⎦⎥ This integral was calculated over each of the 50 × 1 cm length classes. Distribution of fi sh at length l at time t was calculated using A NPNlen age lt,,,= ∑ li it . i=0

The model was initialized with NRage = exp()− Ma× where R = 1,000 a,00 0 (×103) fi sh and M = 0.2 year–1. Initial spawning numbers were calculated A NmNsp age age 00= ∑ a a, i=0 which enabled parameterization of the stock-recruitment relationship using R ⎛ z − 02. ⎞ z − 02. A sr = 0 1− and B sr = . N sp ⎝⎜ 08. z ⎟ 08. zN sp 0 ⎠ 0 Fisheries Assessment and Management in Data-Limited Situations 233

The steepness parameter z had a default value of 0.75. Mean recruitment into the t + 1 year was given by RNABN=+sp() sr sr sp . tt+1 t The age-structured population was updated with

age age NNat,,= at−−11exp[(MF)]− + a,t (the fi shing model for F is described below). Catch was calculated using

age Fat, age at, C at, = ××NMFat, {[()1]−−exp + ]} . MF+ at, Numbers of fi sh in the zero age class were specifi ed with

2 NR0,t= texp() RR cvε − cv 2 , where ε is a normally distributed random variable and Rcv has a default value of 10% (sensitivity analysis considered larger values of this param- eter). Total fi shing mortality F was the sum of individual activity from 50

fi shers with individual eff ort (ek,t) distributed as a random exponential variable (mean 0.4 units of eff ort). Individual catchability was lognormally distributed (mean 0.1, cv 50%). This gave an average fi shing mortality (F) of 0.2 year–1. Fishing mortality for an age class was assumed to be proportional to the vulnerability of that age class. Impacts on a fi shery were modeled by the generation of a random uniform variate (u) for each impact variable: natural mortality; catch- ability; eff ort; and recruitment (future impacts only). The geometrically imposed rate of impact r per year was if()() u≥−1021 P r= . u−− P P else r = 0 where P was the probability of an impact (either Phist or Pfutr). Indicators were calculated using the following equations:

A CCwage tat= ∑ , a a=0

UCcpue int () e1 (tons per eff ort unit or t/eu; note the t =+tkt∑ , k corruption of eff ort data) ⎛ A ⎞ UvNwsurvey 0. 001 survey age [eexp()]005../ 0052 2 t = ⎜ ∑ a at, a ⎟ ε − ⎝ a=0 ⎠ (tons per survey unit, or t/su). Age- and length-based indicators were derived from random samples of fish (1,000 age samples, 3,000 length samples) drawn age from the catch. Zt was calculated using catch-curve analysis (with a age len threshold for recruitment of 4 years); t and t were calculated us- age len ing the usual arithmetic equations; θt and θt were the fraction of the samples less than or equal to 3 years and 22 cm respectively. Finally len len len Zt = 0.36(29.0 − t )/( t − 19.4).

Fisheries Assessment and Management in Data-Limited Situations 235 Alaska Sea Grant College Program • AK-SG-05-02, 2005

Per-Recruit Simulation as a Rapid Assessment Tool for a Multispecies Small-Scale Fishery in Lake Malombe, Malawi, Africa

Olaf L.F. Weyl and Anthony J. Booth Rhodes University, Department of Ichthyology and Fisheries Science, Grahamstown, South Africa

Kissa Mwakiyongo1 and Moses M. Banda Department of Fisheries, Fisheries Research Unit, Monkey Bay, Malawi

Abstract The 390 km2 Lake Malombe supports a small-scale fi shery that is domi- nated by the nkacha net, a locally developed purse seine. The nkacha fi shery contributes in excess of 95% to the catch from Lake Malombe. Since 1990 the annual haplochromine cichlid yield declined from 9,500 t to less than 4,000 t. In Lake Malombe, as in most African fi sheries, the use of assessment methods that allow for dynamic simulation analysis incorporating the response of the stock to changes in management strategy was negated by the lack of directed age-based catch data and the lack of information pertaining to the biology of the target species. In this study, a rapid assessment framework for the assessment of biological and fi shery input-parameters needed for the application of multispecies yield- (YPR) and spawner-biomass per recruit (SBR) analysis is presented. During a one-year assessment period, species selectivity by the nkacha fi shery was determined. Length-frequency analysis allowed for a fi rst estimate of growth rate for fi ve major target species. These growth rate data were then used to estimate age-selectivity into the fi shery, mor- tality rates, and age-specifi c maturity for each of the target species. Sub- sequently, YPR and SBR analyses were used to investigate commonly used “target reference points” as management targets for fi ve target species in the fi shery. The results are discussed with reference to the application

1Deceased. 236 Weyl et al.—Per-Recruit Simulation in Malawi, Africa of per-recruit analysis for the rapid derivation of management advice for multispecies fi sheries in data limited situations.

Introduction Lake Malombe (14º30-14º45S to 35º12-35º20E) is situated in the Man- gochi District of Malawi (Fig. 1). The lake is a shallow, 390 km2 widening of the Upper Shire River about 15 km from its outfl ow from , and provides a livelihood for about 2,000 small-scale fi shers (Weyl et al. 2001b). While catch and eff ort has been monitored by the Malawi Depart- ment of Fisheries since 1976 (Tweddle et al. 1995), the monitoring system aggregates more than 60 species into 13 commercial categories (Tweddle et al. 1995). Despite this aggregation, major changes in the fi shery have been detected. The fi shery for tilapiine , which contributed more than 6,000 tons to the total catch in 1982, collapsed in 1991 and was replaced by a fi shery for a variety of small haplochromine cichlid species (Tweddle et al. 1995). This haplochromine fi shery yielded 9,500 tons in 1990, but by the mid-1990s had declined to less than 4,000 tons annually (Weyl et al. 2001a). Since a major objective of the Malawi fi sheries policy is “the maximization of harvests within safe sustainable yield levels” (Government of Malawi 1999), the decline in this fi shery necessitated a stock assessment. Fishing gear used to harvest haplochromine cichlids on Lake Malombe includes gillnets, beach seines, purse seines, hooks, and traps (Weyl et al. 2004). Despite this diversity in gear use, 147 nkacha nets (purse-seine type gears that are operated off shore) contributed more than 95% to the total haplochromine catch (Weyl et al. 2001a). Nkacha nets utilize mesh sizes ≤ 19 mm and 57 species have been recorded in their catches (Weyl et al. 2004). While the species composition in the catch is highly diverse, five species, chrysonotus, Copadichromis virginalis, Lethrinops turneri, Otopharynx argyrosoma “ssp. red” (informal subspe- cies name after Turner [1996]), and , contributed more than 60% to the catch (Weyl et al. 2004). The presence of an existing fi shery on the lake requires the use of assessment methods that allow for dynamic simulation analysis incorpo- rating the response of the multispecies stock to changes in management strategy (e.g., a change in selectivity or eff ort). However, the choice of suitable assessment methods was constrained by the lack of directed catch and eff ort data, length- or age-based catch data, and other bio- logical data pertinent to the application of age-based models. Further complications arose from the high cost associated with the collection of these data and the immediate need for management recommendations. For this reason, a cost-eff ective stock-assessment technique that is not data intensive is required. Fisheries Assessment and Management in Data-Limited Situations 237

Figure 1. Map of Lake Malombe showing Mwalija and Chapola fi sh landing sites where nkacha net catches were sampled between April 2000 and March 2001.

As a result of similar constraints, fi sheries managers in developing countries have focused on the application of the yield-per-recruit (YPR) model, which is an abbreviation of the full dynamic-pool model (Be- verton and Holt 1956, 1957), in the management of lacustrine fi sheries (Amarasinghe and De Silva 1992, Manyala et al. 1995, Thompson and Al- lison 1997). The application of these YPR models for the assessment of predefi ned fi shing mortality targets (target reference points—TRPs) has become common practice in fi sheries management (Clarke 1991, Punt 1993, Punt and Butterworth 1993, Caddy and Mahon 1995). The YPR approach allows for the determination of at least two commonly used TRPs: fi rst, the fi shing mortality which corresponds to the maximum of 238 Weyl et al.—Per-Recruit Simulation in Malawi, Africa

Table 1. Input parameters used for the application of yield- and spawn- er-biomass per recruit models on Copadichromis chrysonotus (CC), Copadichromis virginalis (CV), Lethrinops turneri (LP), Otopharynx argyrosoma “ssp. red,” (OA) and Otopharynx tetra- stigma (OT) in Lake Malombe, Malawi.

Species

Parameter CCa CV LT OA OT

L 140a 118 144 149 139 ∞ K 1.0a 0.61 0.38 0.46 0.44 a t0 0 0 0 0 0 α 0.000083a 0.00021 0.000043 0.000195 0.0000103 β 2.58a 2.33 2.70 2.33 3.03 φ 0.73a 1.02 2.54 1.09 1.65 a σm 0.12 0.20 1.23 0.25 0.27 a tr 0.57 1.07 1.03 0.84 1.11 a σr 0.07 0.13 0.07 0.08 0.09 M 1.31a 0.7 0.3 0.39 0.38 a FCUR 1.36 1.09 1.65 1.02 0.19 max 5a 5 5 5 5 q 0.009251701 0.007415 0.011224 0.006939 0.001293

Ri 1.52E+08 1.94E+08 3.93E+08 1.38E+08 2.14E+08 aParameter estimates derived from Weyl et al. (2005). L = asymptotic length (mm TL), K = Brody growth coeffi cient (yr–1), t = age at zero length, and = length ∞ 0 α β weight parameters, φ = age-at-50%-maturity (years), σm = variance of logistic maturity ogive, tr = age-at- –1 50%-selection (years), σr = variance of logistic selection ogive (years), M = natural mortality rate (yr ), FCUR –1 = current fi shing mortality rate (yr ), max = maximum age of fi sh (years), q = catchability coeffi cient), Ri = estimated recruitment.

the yield-per-recruit curve (FMAX) and second, the marginal yield or F0.1 strategy (Gulland and Boerema 1973, Deriso 1987), which is the rate of fi shing mortality at which the slope of the yield-per-recruit curve falls to 10% of its value at the origin. However, the assumption that recruitment is constant and independent of spawner-biomass has led to some criti- cism of YPR-based TRPs and scientists concerned with the management of marine species have tended to base their TRP recommendations on the results of spawner biomass-per-recruit (SBR) models (Butterworth et al. 1989, Smale and Punt 1991). In the absence of information on the surplus production function or the spawner biomass-recruitment relationship, SBR-based TRPs are currently considered the most robust, allowing for the determination of a fi shing mortality rate that will provide relatively high yields at lower risks (Clarke 1991, Punt 1993). The defi nition of a SBR-based TRP (FSB(x)) Fisheries Assessment and Management in Data-Limited Situations 239 involves setting the fi shing mortality to a level at which spawner biomass- per-recruit is reduced to x% of its pristine level. Although there is no conventional FSB(x) TRP, the maintenance of SBR at between 25% and 50% of unexploited levels has been recommended (Deriso 1987, Sissenwine and Shepherd 1987, Butterworth et al. 1989, Punt 1993, Booth 2004). Be- cause haplochromine cichlids are mouth-brooders (Turner 1996), strong density dependence between spawner-biomass and recruitment is implied and the maintenance of SBR at levels where the stock can replace itself is likely to be important for the sustainability of haplochromine-based fi sheries. This study utilizes data derived from a one-year survey of the nkacha net fi shery to derive input parameters for, and apply YPR and SBR models to assess, four commonly used TRPs for the derivation of management advice for C. chrysonotus, C. virginalis, L. turneri, O. argyrosoma “ssp. red,” and O. tetrastigma in the Lake Malombe nkacha net fi shery.

Methods The application of per-recruit analysis requires age-based estimates for mortality, maturity, selectivity, and the length-weight relationship. Copadichromis chrysonotus has been assessed using per-recruit analysis and all input parameters are available (Weyl et al. 2005). For the other four species, C. virginalis, L. turneri, O. argyrosoma “ssp. red,” and O. tetrastigma, the length-weight relationship and length-based selectivity and maturity parameters were available in the literature (Banda 1995, Weyl et al. 2004).

Growth estimation Due to the use of small mesh sizes (≤ 19 mm) by the nkacha net fi shery resulting in negligible diff erences in size-selectivity (Weyl et al. 2004), the length-frequency of the target species in this gear showed discernable modal progression over time and was therefore considered suitable for the estimation of length-at-age (lt) using length-frequency analysis (Pauly and David 1981, Wetherall 1986, Shepherd 1987). Monthly length-frequency samples were collected from the nkacha net fi shery at two major landing sites on the western shore of the lake, for three consecutive days a month from March 2000 to April 2001. The methods used during this survey are detailed in Weyl et al. (2004, 2005). Length-frequencies of C. virginalis, L. turneri, O. argyrosoma “ssp. red,” and O. tetrastigma in sampled catches were regrouped into 5 mm size classes and raised to represent the length-frequency of the estimated catch of the species during each sampling period using the methods outlined by Weyl et al. (2005) for C. chrysonotus. 240 Weyl et al.—Per-Recruit Simulation in Malawi, Africa

To estimate length-at-age (lt), length-frequency analysis (Pauly and David 1981, Wetherall 1986, Shepherd 1987) was used to derive esti- mates for asymptotic length (L ) and the growth coeffi cient (K) for the ∞ (t–t ) von Bertalanff y growth model: l = L (1–exp–K 0 ) (Ricker 1975). A pre- t ∞ liminary estimate of the growth parameter L was obtained from pooled ∞ monthly length-frequency samples using the Powell-Wetherall method (Wetherall 1986). Electronic length frequency analysis (ELEFAN) (Pauly and David 1981) was used to derive a fi rst estimate of K. This analysis was performed using the FAO-ICLARM Fisheries Assessment Tools (Fi- SAT) software (Gayanilo et al. 1997). There was insuffi cient resolution in the data to calculate the age-at-zero length (t0) and this parameter was, therefore, taken to be zero.

Mortality A fi rst approximation of the instantaneous rate of total mortality (Z) was estimated by catch-curve analysis (Ricker 1975). Annualized length-fre- quency data presented in Weyl et al. (2004) were analyzed by means of a linearized length-converted catch curve (Pauly 1983, 1984a,b). This method uses the von Bertalanff y growth parameters to plot ln(f/dt) against t, where f is the frequency of individuals in each length class and t is the relative age of the fi sh. The value dt is the time taken for the fi sh to grow through a particular length class and allows for decreased growth with increased age. The negative of the slope of the resultant linear regression line through the descending data points gives a fi rst approximation of Z. Natural mortality (M) was estimated using the Pauly (1980) empiri- cal equation; M = 0.0152 0.279 lnL + 0.6543 lnK + 0.463 lnT; where − − ∞ L (cm) and K are the von Bertalanff y growth parameters and T is the ∞ mean annual water surface temperature (26.2ºC, calculated from monthly temperature readings presented in Jambo [1997]). The estimates for M derived using the Pauly (1980) equation were similar to independent estimates for closely related species in Lake Malawi (Tweddle and Turner 1977) and were accepted as a fi rst estimate for the fi ve species. The fi shing mortality rate was derived by subtraction (F = Z – M). Because the fi shery targets all fi ve species, the coeffi cients of propor- tionality between fi shing eff ort and fi shing mortality (i.e., the catchability coeffi cients) will vary between species due to diff erences in their avail- ability and vulnerability to the gear (Murawski 1984). Therefore, at any given level of eff ort, the F for each species in a multispecies fi shery will be diff erent. Catchability coeffi cients were estimated using the linear re- lationship, Fi = qi × f, where qi is the catchability coeffi cient of species i, and f is the total eff ort by all gears in the fi shery during the assessment year (i.e., 147 nkacha nets enumerated in 2001). Fisheries Assessment and Management in Data-Limited Situations 241

Maturity and selectivity

The proportion of mature fi sh-at-age ψt was estimated by age-converting the Banda (1995) length-based logistic maturity ogives as

1 ⎛ l ⎞ tt ln 1 t = 0 −−⎜ ⎟ K ⎝ L ⎠ ∞ .

The age-converted ogive width parameter σt was calculated from the length-based equivalents as

1 ⎛ σ ln3⎞ t ln 1 l σt = 0 −−⎜ ⎟ (Booth and Weyl 2004). KL⎝ − φ ⎠ ∞ 1

Age conversion of the length-based selectivity for the four species provided in Weyl et al. (2004) was calculated using the maturity methods described above.

Per-recruit analysis An assumption of per-recruit analysis is that the parameters for recruit- ment, growth, and natural mortality are constant from one year to the next and, therefore, the stock is in a steady state. Under these assump- tions, yield-per-recruit [YPR(f )] and spawner biomass-per-recruit [SBR(f)] of any species i as functions of fi shing eff ort f, were calculated as:

max YPR() f= N W S q fdt itititii∫ ,,, t r

max SBR() f= N Wψ dt ititi∫ ,,ti, t r

In all YPR and SBR models, for any species i, Wt is the mass-at-age t (de- β rived from the relationship Wt = α(lt) where lt is length-at-age, α and β are parameters describing the length-weight relationship), St is the selectivity- at-age, tr is the age of fi sh fi rst recruiting into the fi shery, ψt is the matu- rity-at-age, qi is the catchability coeffi cient, f is the fi shing eff ort (number of nkacha nets) and max the maximum recorded age. Because no direct estimate of age through hard part analysis was possible, the parameter max was set at 5 years for all species as this was the maximum number of modes seen in the length frequency distributions (Fig. 2). 242 Weyl et al.—Per-Recruit Simulation in Malawi, Africa

100

75 50

25 C. virginalis 0 125 100 75 50 25

Total(mm) length L. turneri 0

125 100 75 50 25 O. argyrosoma ssp. “red” 0 125 100 75 50 25 O. tetrastigma 0 Mar Apr MayJun Jul Aug Sep OctNov Dec Jan Feb Mar Apr Month

Figure 2. Monthly length-frequency (bars) and fi tted von Bertalanff y growth curves (lines) for Copadichromis virginalis (L = 118 mm TL, ∞ K = 0.61, t = 0), Lethrinops turneri (L = 144 mm TL, K = 0.38, t = 0 ∞ 0 0), Otopharynx argyrosoma “ssp. red” (L = 149 mm TL, K = 0.46, t ∞ 0 = 0), and O. tetrastigma (L = 139 mm TL, K = 0.44, t = 0) sampled ∞ 0 from the Lake Malombe, Malawi, nkacha net fi shery between April 2000 and April 2001. Fisheries Assessment and Management in Data-Limited Situations 243

−(tr,iMi)−(a−tr,i)(St,iqif+Mi) Numbers at age t (Nt), were calculated as Nt,i = e where M is the age-independent rate of natural mortality. The YPR and SBR inte- grals were solved numerically using Simpson’s rule with 50 steps.

To calculate total YPR for all fi ve species at any given level of f, TYPRf, the YPR(f)i of each species i was corrected according to the estimated recruitment Ri and TYPRf was then additive, such that:

5 TYPR YPR() f fi= ∑ . i=1

Recruitment for species i, Ri was obtained by dividing the total catch of each species (Yi) during the 2001 calendar year by the total yield-per-re- cruit (YPRi) from the fi shery determined at “base case” fi shing and natural mortality scenarios. Parameter values used in the analysis are summarized in Table 1.

Target reference points Four target reference points (TRPs) were investigated for the YPR and SBR curves: FMAX (that fi shing mortality corresponding to the maximum of the YPR curve); F0.1 (where the slope of the YPR curve is 10% of that at the ori- gin); FSB50 and FSB35 (the fi shing mortalities that correspond to a reduction in the SBR curve to 50% and 35% of its unexploited equilibrium level). Due to the inherent diffi culty in the estimation of the instantaneous rate of natural mortality (M), the sensitivity of the YPR and SBR models to changes in the rate M was assessed using a Monte Carlo estimation proce- dure (Manly 1998) described in Weyl et al.(2004). In this procedure 1,000

(U1000) random mortality samples (MU: U=1,2,…,U1000) were generated, with a normally distributed error structure around the “base case” M of each species. A coeffi cient of variation (CV) of 25% around the M-estimate was utilized as this represented the CV of fi ve M estimates derived for similar cichlid species in Lake Malawi (Tweddle and Turner 1977). Sub- sequently, a corresponding set of Fˆ1, Fˆ2,…, FˆU1000 TRPs was computed for each M~N[M,(0.25×M)]2 and the mean, CV, and 95% confi dence intervals derived. The percentile method was used to estimate 95% confi dence intervals, where the 2.5% and 97.5% quartiles from the sorted Fˆ vector were chosen to represent the upper and lower 95% confi dence intervals respectively (Buckland 1984).

Results A total of 3,989 C. virginalis, 6,335 L. turneri, 3,512 O. argyrosoma “ssp. red,” and 3,406 O. tetrastigma were measured during the assessment pe- riod, and the von Bertalanff y growth curves fi tted to monthly length fre- quency distributions are shown in Fig. 2. The fi ve species were relatively small with estimated L ranging between 118 and 140 mm TL (Table 1). ∞ 244 Weyl et al.—Per-Recruit Simulation in Malawi, Africa

Table 2. Summary statistics for four target reference points (TRP) (FMAX, F0.1, FSB50, and FSB35) derived from a Monte Carlo estimation procedure using 1,000 iterations for fi ve target species in the Lake Malombe nkacha net fi shery.

F (yr–1) Species TRP Mean Lower-upper 95% CIs CV (%)

C. chrysonotus FMAX 2.41 1.11-4.41 34.1

F0.1 1.14 0.64-1.75 24.5

FSB50 0.68 0.43-0.97 20.1

FSB35 1.13 0.70-1.64 20.6

C. virginalis FMAX 1.69 0.86-2.93 57.6

F0.1 0.76 0.53-1.03 17.2

FSB50 0.54 0.39-0.71 15.4

FSB35 0.94 0.65-1.29 17.9

L. turneri FMAX 0.62 0.53-0.71 7.4

F0.1 0.42 0.38-0.47 5.4

FSB50 0.28 0.27-0.30 3.5

FSB35 0.45 0.42-0.48 3.8

O. argyrosoma “ssp. red” FMAX 0.72 0.57-0.92 12.6

F0.1 0.46 0.39-0.55 8.8

FSB50 0.33 0.30-0.37 6.1

FSB35 0.53 0.47-0.61 6.7

O. tetrastigma FMAX 0.68 0.57-0.83 10.0

F0.1 0.46 0.40-0.53 7.1

FSB50 0.32 0.29-0.35 4.4

FSB35 0.50 0.46-0.55 4.6

C. chrysonotus data are from Weyl et al. 2005

Length-age converted catch curves and resultant Z estimates are shown in Fig. 3. First estimates of M, F, and q for C. chrysonotus, C. virginalis, L. turneri, O. argyrosoma “ssp. red,” and O. tetrastigma, and age-converted selectivity and maturity parameters are summarized in Table 1.

For all species, the F required to attain the FMAX TRP was considerably higher than that required to attain FSB50 and FSB35 (Fig. 4, Table 2). In all species, an FMAX strategy resulted in severe SBR depletion and the F0.1 TRP approximated the FSB35 TRP (Fig. 4, Table 2). The response of YPR and SBR indicate diff erences in resilience to fi shing eff ort by the diff erent species. From a YPR perspective, both C. chrysonotus and C. virginalis are harvested at close to optimum levels with current fi shing mortalities (FCUR) between the F0.1 and the FMAX TRPs. From an SBR perspective, FCUR reduces the SBR of the two species to about Fisheries Assessment and Management in Data-Limited Situations 245

12 C. virginalis 20 9 15 6 10 -1 3 Z = 1.79 year 5 r2 = 0.95 0 0 12 L. turneri 15

9 10 6 -1 5 3 Z = 1.95 year r2 = 0.97 0 0 ln(f/dt) 20 9 O. argyrosoma ssp. “red” 15 6 Frequency (%) 10 3 Z = 1.41 year-1 5 r2 = 0.89 0 0

12 O. tetrastigma 15

9 10 6 Z = 0.57 year-1 5 3 r2 = 0.97 0 0 01234567 Age (years)

Figure 3. Length-age converted catch curves for Copadichromis virginalis, Lethrinops turneri, Otopharynx argyrosoma “ssp. red,” and O. tetrastigma sampled from the nkacha net fi shery in Lake Malombe, March 2000 to April 2001. Total mortality (Z) estimates were ob- tained through regression analysis of the descending limb (closed circles) of the linearized catch curve (closed circles). The ascending limb of the catch curve and outliers (open circles) were excluded from analysis. 246 Weyl et al.—Per-Recruit Simulation in Malawi, Africa

F F MAX C. chrysonotus 100 0.1

75 FCUR

50 FSB50 25 FSB35 0 F F MAX C. virginalis 100 0.1

F 75 CUR

50 FSB50 25 FSB35 0

FMAX L. turneri 100

YPR F 75 0.1

F F

and 50 SB50 CUR SBR 25 FSB35 YPR SBR 0

FMAX O. argyrosoma ssp. “red” (%) 100 F 75 0.1 FCUR

50 FSB50 25 FSB35 0 F F O. tetrastigma 100 CUR MAX F 75 0.1

50 FSB50

FSB35 25 0 01234 F

Figure 4. The response of Copadichromis chrysonotus, C. virginalis, Lethri- nops turneri, Otopharynx argyrosoma “ssp. red,” and O. tetrastig- ma yield-per-recruit (YPR) and spawner biomass-per-recruit (SBR) to fi shing mortality (F ) in Lake Malombe, Malawi. Point estimates for

the current fi shing mortality rate, FCUR, and four target reference points, FMAX, F0.1, FSB50, and FSB35 are illustrated. (C. chrysonotus data are from Weyl et al. 2005.) Fisheries Assessment and Management in Data-Limited Situations 247

30% which exceeds the FSB35 TRP. L. turneri is severely over-exploited from both an YPR and SBR perspective with FCUR being more than twice as high as FMAX and SBR being depleted to about 6% of pristine levels. In O. argyrosoma “ssp. red,” FCUR also exceeds FMAX and depletes SBR to about 17% of unexploited levels. With FCUR well below that required to attain F0.1 and an SBR of about 66% of pristine levels, the O. tetrastigma stock appears healthy.

From a TYPR perspective, FMAX was attained at f levels of about 130 gears and F0.1 was attained at an f of 68 gears (Fig. 5). Eff ort levels of 130 gears, while lower than current eff ort, would not lead to a signifi cant rebuilding of the SBR in the four over-exploited species. The F0.1 strategy would maintain the SBR of C. chrysonotus, C. virginalis, and O. tetrastigma at levels above 50% of pristine, and reduce L. turneri and O. argyrosoma “ssp. red” SBR to 19% and 39% of pristine SBR, respectively.

Discussion It has long been recognized that when a common gear harvests a number of species, it is impossible to manage each species at its optimum level (Beverton and Holt 1957, Anderson 1975, Pope 1979, Pikitch 1987). This is due to diff erences in the life histories of the diff erent species which infers diff erent population responses to exploitation rates as well as behavioral diff erences that aff ect the availability of each species to the gear (Murawski 1984). For instance, slow growing species with low natu- ral mortality rates, long life-spans, late maturity, and precocial breeding habits are more likely to have relatively stable population sizes, and therefore relatively stable catch levels (Adams 1980). However, once they are overfi shed, it would require a relatively long period (depending on the extent of overfi shing) for the stock to rebuild. Conversely, fast growing species with high rates of natural mortality, early maturity, and altricial breeding habits would support more productive fi sheries, where fi sh can be harvested at younger ages from the population. However, these fi sher- ies are likely to be of a “boom and bust” nature (Adams 1980), character- ized by high initial stock sizes, and the potential for both growth and recruitment overfi shing. These eff ects are evident in the target species of the nkacha net fi sh- ery. While all fi ve species are maternal mouth-brooders (Turner 1996), L. turneri had the latest maturity and lowest natural mortality rate (Table 1). Subsequently, this species appeared to be most vulnerable to the fi shery with relatively low eff ort levels leading to asymptotic YPR and severe SBR depletion. At current eff ort levels, this species is over-exploited from both an YPR and SBR perspective. This over-exploitation is also evident from catch estimates for this species which show a decline in L. turneri catch from about 2,200 tons in 1991 to less than 900 tons in 2001 (Weyl et al. 2004). 248 Weyl et al.—Per-Recruit Simulation in Malawi, Africa

Fmax F F0.1 CUR 100

75

50 (%)

25 TYPR(f) 0 C. chrysonotus 95 C. virginalis L. turneri 80 O. argyrosoma O. tetrastigma 65 (%) 50 FSB50

35 FSB35 SBR(f) 20

5 0 50 100 150 200 250 300 Nkacha nets

Figure 5. The response of total yield-per-recruit (TYPR) and spawner bio- mass-per-recruit of Copadichromis chrysonotus, C. virginalis, Lethrinops turneri, Otopharynx argyrosoma “ssp. red,” and O. tetrastigma as a function of eff ort (expressed as the number of nkacha nets) in Lake Malombe, Malawi, Africa. Note that for TYPR the yield-per-recruit for each species considered is additive and expressed as a percentage of the maximum. Fisheries Assessment and Management in Data-Limited Situations 249

Conversely, the two Copadichromis species had the fastest growth rates and highest natural mortality rates. Consequently, the same eff ort levels that over-exploit L. turneri resulted in less severe YPR and SBR reduction in these two species. Despite similar catchability coeffi cients and SBR reductions to about 30% of pristine levels, C. chrysonotus catch increased from about 120 tons in 1991 to about 510 tons in 2000, while C. virginalis landings declined by more than 50% over the same period (Weyl et al. 2004). While this implies a higher vulnerability of C. virginalis to the fi shery, further investigation of this eff ect was not possible. The two Otopharynx species had similar growth and natural mortal- ity rates, but responded diff erently to the fi shery. Current eff ort levels exceed the FMAX TRP for O. argyrosoma “ssp. red” and deplete its SBR to about 17% of unexploited levels (Fig. 4). O. tetrastigma, on the other hand, appears far less vulnerable to the gear and the species is underexploited on a YPR basis and its SBR is estimated to exceed 66% of unexploited lev- els (Fig. 4). Such eff ects imply diff erent vulnerabilities of the fi ve species to the fi shing gear, which may be a consequence of diff erences in spatial distribution or behavior. Unfortunately, little is known about the distri- bution of the fi ve species within the lake. What is known is that in the adjacent Lake Malawi, O. tetrastigma favors well-vegetated areas, while O. argyrosoma “ssp. red” inhabits open areas (Konings 1995). It is therefore possible that a part of the O. tetrastigma population is unavailable to nkacha nets, which operate in off shore areas. It must also be considered that, due to the shallow depth (maximum depth of 5 meters) and uniform sandy/muddy bottom, most of the lake is fi shable with nkacha nets and spatial exclusion would be valid only for species favoring extremely shallow areas. The lack of knowledge on distribution and behavior of the fi ve species therefore forms a major bottleneck in understanding the dynamics of the system. But all species have the same commercial value and it is unlikely that the fi shery would target any one of the fi ve species preferentially. The Malawi fi sheries policy (Government of Malawi 1999) stresses the maximization of harvests within safe sustainable yield levels. Peak yield-per-recruit is attained if an infi nite fi shing mortality is applied when the biomass of a cohort is at its maximum (Pereiro 1992). However, it is evident that, at current recruitment levels, higher yields are unlikely to be attained from this fi shery (Fig. 5). In mouth-brooding cichlids recruit- ment may be dependent on spawner-biomass and the maintenance of the spawner stock at levels where it can replace itself is vital. Taking SBR recommendations for other species (Gabriel et al. 1989, Quinn et al. 1990, Clarke 1991, Punt 1993, Mace 1994, Caddy and Mahon 1995, Booth 2004) into account, the maintenance of SBR at levels between 35% and 50% of pristine was taken as an initial management target and, ideally, the SBR of all fi ve major target species should be maintained at levels exceeding 35% of unexploited biomass. 250 Weyl et al.—Per-Recruit Simulation in Malawi, Africa

A visual representation of the possible management choices, pre- sented in Fig. 6, shows the variability inherent to the FSB35 management targets. Taking into account the variability of the FSB35 estimates, current eff ort levels are likely to maintain the SBR of C. chrysonotus, C. virgin- alis, and O. tetrastigma within acceptable levels. Eff ort would have to be reduced to at most 88 nkacha nets if the FSB35 TRP is to be attained for at least four species. If SBR is to be maintained at a FSB35 TRP for all fi ve spe- cies, eff ort would have to be reduced to about 40 gears. However, as the nkacha net fi shery cannot target any species in isolation and the market price for all fi ve species is identical, a strategy maximizing total yield from the fi shery, without regard for individual SBR, might be favored. But in the absence of information on interspecies eff ects and the SBR-recruit- ment relationship, such a strategy cannot be recommended. While per-recruit models are relatively data-intensive and some data from previous studies (Banda 1995, Weyl et al. 2004, Weyl et al. 2005.) were used in the analysis, all input parameters for the models could have been estimated during a one-year assessment period. But it must be realized that the per-recruit models assume that age-specifi c maturity, age-specifi c selectivity, the growth equation, natural mortality and the current rate of fi shing mortality are constant, that there is no recruitment variability, and that it is possible to impose a specifi ed fi shing mortal- ity (Punt 1993). Despite these constraints, management is an immediate rather than a future concern in African fi sheries and a per-recruit ap- proach enables the rapid provision of a number of management options for a fi shery given constraints in available historic data. It must also be noted that the age estimates derived from length-frequency analysis in this study only provide a fi rst-estimate of growth for the fi ve species until alternative aging methods can be applied. In this regard, sectioned oto- liths are currently considered the most suitable hard tissue for age and growth determination in tropical and subtropical areas (Campana 2001). For this reason, it is vital that the per-recruit approach presented in this paper is seen as a fi rst-assessment and that eff orts be made to collect data for the future application of more quantitative methodologies.

Acknowledgments The senior author would like to thank Rhodes University for the award of a Rhodes University postdoctoral fellowship. The fi eldwork for this study was fi nancially and logistically supported by the Gesellshaft Für Technische Zusammenarbeit (GTZ GmbH, Eschborn), supported by the National Aquatic Resource Management Programme (NARMAP) of the Malawi Department of Fisheries. We would like to express our sincere thanks to Uwe Scholz and Peter Jarchau for their moral support during the fi eldwork phase of this study. We also express our sincere thanks to the fi shermen of Lake Malombe whose cooperation facilitated this study. Fisheries Assessment and Management in Data-Limited Situations 251

OT OA fCUR LT

species CV CC

0 50 100 150 350 400 450 Nkacha nets

Figure 6. Mean and 95% confi dence intervals (CIs) for the FSB35 target refer- ence point (TRP) expressed as a function of fi shing eff ort for Co- padichromis chrysonotus (CC), C. virginalis (CV), Lethrinops turneri (LT), Otopharynx argyrosoma “ssp. red” (OA), and O. tetrastigma (OT) in the nkacha net fi shery of Lake Malombe, Malawi, Africa. The 95% CIs were derived from a Monte Carlo estimation procedure using 1,000 iterations for fi ve target species in the Lake Malombe

nkacha net fi shery. Current fi shing eff ort fCUR is illustrated.

The attendance of the senior author at the 21st Lowell Wakefi eld fi sher- ies symposium was facilitated through fi nancial assistance from Rhodes University and the Alaska Sea Grant College Program.

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Do Commercial Fishery CPUE Data Refl ect Stock Dynamics of the Baltic Herring?

Tiit Raid, Ahto Järvik, Leili Järv, and Olavi Kaljuste Estonian Marine Institute, University of Tartu, Tallinn, Estonia

Abstract Herring are important commercial fi sheries of the Baltic Sea. The struc- ture and dynamics of Baltic herring stocks has been monitored thor- oughly since international management started in the mid-1970s but management has not always been successful, particularly during periods of rapid change. Shortcomings in certain assessment data are a concern and the diffi culty of obtaining appropriate biological samples from the huge and extremely heterogeneous herring stocks is a problem. Another problem is the lack of good tuning data for age-structured analyses. Pres- ently the results of an annual International Acoustic Survey are used for tuning in extended survivors analysis (XSA). A critical shortcoming is that the acoustic survey does not cover several key areas of herring distribu- tion. Therefore, there is a need for alternative or supplementary data to minimize eff ects of biased acoustic results. CPUE (catch per unit eff ort) in commercial trawl fi shery may be a potential source of additional data. In theory, the CPUE should be proportional to the stock size so changes in CPUE, adjusted for gear effi ciency, could provide, at low cost, supple- mentary information on stock trends. The CPUE data collected from the Estonian pelagic trawl and pound-net fi shery (a small part of the larger Baltic herring fi shery) show good accordance with the results of VPA estimates of separate stock units in 1990-2000s. Further exploration of commercial CPUE as a stock status index would be reasonable.

Introduction Pelagic stocks provide the vast majority of commercial fi sh production of the Baltic Sea. The total landings of Baltic herring (Clupea harengus membras) and the Baltic Sprat (Sprattus sprattus balticus) exceeded 256 Raid et al.—Stock Dynamics of Baltic Herring

600,000 t, sometimes reaching 700,000 t in the last decade. Like herring in other parts of the world, Baltic herring form local stocks or popula- tions (Stephenson 1991). Probably there are nine or ten diff erent Baltic herring populations, each with diff erent biological characteristics and stock dynamics (Ojaveer 1981, Stephenson 1991). Three herring popula- tions, the Gulf of Riga herring, the Gulf of Finland herring, and the open- sea herring of the northeastern Baltic, inhabit the northeastern part of the Baltic Sea. The gulf herring stocks spend all year within gulf waters, while the open-sea herring occur mostly in the Baltic proper, performing spawning migrations to the spawning grounds located in the gulfs or archipelago area. The dynamics of Baltic herring populations (stocks) have been as- sessed and managed internationally since the mid-1970s. In early years, the separate assessments were performed for several local stocks, mostly defi ned on geographical basis (ICES 2001b). Since 1990, all local herring populations in the main basin and in the Gulf of Riga and the Gulf of Finland were combined and assessed as one stock (central Baltic herring in subdivisions 25-29 and 32). At present, the Baltic herring is assessed in fi ve assessment units (Fig. 1): • Herring in subdivisions 22-24.

• Herring in subdivisions 25-29 and 32 excluding the Gulf of Riga.

• The Gulf of Riga herring.

• Herring in subdivision 30.

• Herring in subdivision 31.

The international management of those stocks has not always been successful, particularly in case of the central Baltic herring where biomass has decreased continuously throughout the approximately 30 year period of observations (Ojaveer 2002). Therefore the complex stock structure of the Baltic herring could be one of the reasons for diffi culties in under- standing and managing these stocks. There may be other reasons; for example diffi culties in data collection also can have a substantial role (Raid 2002). In general, there are only few problems with collecting of general biological data from the commercial catches, discards, and landings. The respective data sets cover all Baltic herring fi sheries, areas, and seasons for past 30 years reasonably well (ICES 2003). However, the tuning data for analytical assessments are fragmentary and this has been one of the shortcomings of herring assess- ment for years. At present, the results of the annual International Acous- tic Survey (IAS) are used in order to tune the VPA in the XSA (extended survivors analysis) in the routine herring assessments by the ICES Baltic Fisheries Assessment Working Group. The IAS, initially directed on sprat Fisheries Assessment and Management in Data-Limited Situations 257

10° 12° 14° 16° 18° 20° 22° 24° 26° 28° 30° 66°

65°

64°

63°

62°

61°

60°

59°

58°

57°

56°

55°

54°

Figure 1. ICES subdivisions in the Baltic Sea. The light-shaded area shows the coverage by the International Acoustic Survey. The overlapping areas between diff erent national surveys are dark-shaded. 258 Raid et al.—Stock Dynamics of Baltic Herring stock, does not allow full coverage of the herring distribution area. Areas do not include a substantial part of the distribution area of the central Baltic herring, most of subdivision 29, the Gulf of Finland (subdivision 32), and the Gulf of Riga (part of subdivision 28) (Fig. 1). Consequently one herring population, the open-sea herring in the northeastern Baltic, has only partial coverage, while two populations (the Gulf of Finland her- ring and the Gulf of Riga herring), are not covered at all (Fig. 1). Therefore although there are considerable basic biological data on catch composi- tion, there are essential gaps in the key data sets used for tuning of the assessments. In this sense, the Baltic herring fi shery is data-limited. The limitation is not with the “amount” of data (which is voluminous) but rather with the limited geographic coverage. The main reason for poor coverage is high cost of acoustic surveys. In that respect, there is a clear need for alternative or supplementary data in order to fi ll the gaps in the existing tuning data and thus minimize the eff ect of inadequate acoustic estimates on assessment results. CPUE data (catch per unit eff ort) from the commercial fi shery may be a source of additional data for the herring stocks in the northeastern Baltic. The CPUE of the Finnish trawl fi shery is routinely used in the as- sessments of herring stock in the Bothnian Sea (subdivision 30) and in the Bothnian Bay (subdivision 31; ICES 2001a, 2002, 2003). In theory, the CPUE of the commercial fi shery should be proportional to the stock size (e.g., Gulland 1964), and consequent change in CPUE should track, at given gear effi ciency, the dynamics in fi sh stocks. Such additional CPUE information could provide a low cost alternative or supplement to acous- tic estimates used for tuning. The aim of the present paper was to explore if CPUE in commercial fi shery could be a possible additional data source on stock status of the Baltic herring in the northeastern Baltic.

Materials and methods Biological data for this study was collected from the Estonian commercial trawl and pound-net fi shery during the routine data collection for assess- ment purposes. A sample of 100 fi sh was collected and analyzed every 10 days for all fi shing seasons and fi shing grounds in Estonian waters of subdivisions 28, 29, and 32 and in the Gulf of Riga (Fig. 1). Most of the data used in present work are from the period 1995-2002. The pelagic trawl fi shery takes about 95% of Estonian herring catches in most fi shing areas, except the Gulf of Riga. In general, the fi shing fl eet and the gears have not been changed in the recent decade. Usually this fi shery exploits the densest herring concentrations. Since no discarding or sorting occurs in the Estonian trawl fi shery, catch data can be used to characterize the main trends in herring stocks. Approximately 5% of her- ring catches are taken by the pound-net fi shery (but this can be up to 50% in the Gulf of Riga). The pound nets are big fi xed trap-nets with open tops. Fisheries Assessment and Management in Data-Limited Situations 259

They are used in shallow coastal areas during the spawning season (sec- ond quarter of the year, April-June) to catch pre-spawning herring. There- fore only the spawning stock is represented in the pound-net fi shery. The CPUE data in trawl fi shery (kilograms per hour) were compiled on a quarterly basis according to logbooks of fi shing vessels. The respective data for herring pound-nets, in metric tons per check (the fi shermen check the pound-net catches 3-5 times a week), were compiled on a monthly basis. The CPUE of the pound-net fi shery was explored in the Gulf of Riga only (the main basin for that fi shery). The VPA estimates of stock com- ponents were derived either from the reports of the ICES Baltic Fisheries Assessment Working Group (Gulf of Riga herring, central Baltic herring) or produced ad hoc, using input parameters (catch numbers, mean weights, and natural mortalities, etc.) available for the respective subdivisions in the same sources (ICES 2001a,b, 2002, 2003).

Results and discussion The spawning stock biomass (SSB) of the complex central Baltic herring, including several local populations, has decreased by approximately 70% since 1974 (ICES 2003). Landings decreased from 300,000 t to below 200,000 t. Fishing mortality estimates have been in the range of 0.2-0.3; they were above the defi ned FPA (F = 0.19, ICES 2003) until 1994, increasing thereafter up to almost 0.5 in 2000 (Fig. 2). The separate assessments of diff erent stocks and results of hydroacoustic surveys of diff erent subunits (herring in subdivisions 25-27, subdivisions 28, 29, and 32 and the Gulf of Riga herring) have revealed variation within pooled assessment units. For instance, fi shing mortality of the Gulf of Riga herring has decreased but there was a sharp increase in mortality in the northeastern Baltic (sub- divisions 28, 29, and 32). At the same time stock abundance and biomass of the Gulf of Riga herring increased to record high levels in early 2000s also allowing higher catches (ICES 2002, 2003; Fig. 3). The average CPUE data from the Estonian herring pelagic trawl fi sh- ery, recorded since 1995, is presented in the Table 1. The comparison of the dynamics of mean CPUE and the SSB estimates in respective as- sessment units show similar trends (Figs. 2 and 3). However, the degree of coherence varies—the closest associations were between subdivision 32 (Gulf of Finland) and for the combined unit subdivisions 28, 29, and 32 (Figs. 4 and 5). The fi t between the mean CPUE and the SSB estimate in subdivision 29 was the poorest. The results indicate that for the Gulf of Riga and subdivision 32, the trends in CPUE of the commercial trawl fi shery are quite similar to the SSB trends. Defi ciencies in the quality of VPA estimates due to the complexity of herring in the area might be the reason for the poor fi t observed for subdivision 29. The area is an essen- tial feeding area and a migratory area for several local herring stocks that mixing there, particularly during the late autumn and wintering period. 260 Raid et al.—Stock Dynamics of Baltic Herring

Subdivision 25-29,32, excl. GoR

1,400,000 F (3-6) 0.6 SSB 1,200,000 Landings 0.5

1,000,000 0.4

800,000

0.3 F 600,000

SSB, Landings, t SSB, Landings, 0.2 400,000

0.1 200,000

0 0 1980 1985 1990 1995 2000

Subdivisions 28, 29& 32

450,000 SSB 1000 CPUE 400,000 900

800 350,000 700 300,000 600 250,000 500

SSB, t SSB, 200,000

400 kg/h CPUE, 150,000 300 100,000 200

50,000 100

0 0 1983 1985 1987 1989 1991 1993 1995 1997 1999 2001

Figure 2. Upper panel shows dynamics of SSB, landings, and fi shing mortality in the central Baltic herring stock in the 1980-2000s. Lower panel demonstrates SSB and CPUE trends in subdivisions 28, 29, and 32 (ICES 2002, 2003). Fisheries Assessment and Management in Data-Limited Situations 261

Table 1. Mean catch per hour in the herring pelagic trawl fi shery (kg).

ICES sub- division, zone 1995 1996 1997 1998 1999 2000 2001 2002

Gulf of Riga 1,009 707 637 667 700 697 804 820 29 1,035 892 802 671 993 836 771 419 32-1 715 572 373 271 441 394 300 184 32-2 629 498 410 241 417 370 272 538 32 672 559 377 267 438 392 297 264 Mean 868 697 498 348 589 559 483 482

CPUE data may not be normally distributed so several authors ad- vocate using median CPUE instead of the arithmetic mean (Hamley and Howley 1985, Reed 1986, Järvik 1989). The comparison of CPUE data from the herring pound-net fi shery in the Gulf of Riga has a poor fi t, regard- less whether the simple arithmetic mean or median of CPUE was used (Table 2, Fig. 6). The absence of correlation could be explained by the pattern of the pound-net fi shery, concentrated mostly on major spawn- ing grounds. The actual number of fi sh in pre-spawning schools at each particular spawning ground depends on environmental factors, such as wind direction and temperature, and therefore can be rather variable regardless of spawning stock size. However, the total annual pound-net catches were found to be a quite good indicator of Gulf of Riga herring SSB (Järvik and Raid 2000). The commercial CPUE data used in the present study cover only a small fraction of the conventional assessment units. To determine if CPUE data obtained in the limited part of the assessment unit is representative as an indicator of stock developments, the arithmetic mean of commer- cial CPUE of Gulf of Finland herring in 1995-2002 was compared with the available set of respective SSB estimates for diff erent herring stock units and their combinations. The results (Fig. 7) indicate that the commercial CPUE data, obtained from the remote northern part of the distribution area of the central Baltic herring stock complex provides a satisfactory description of the main SSB trends in both combined stocks (subdivisions 25-29 and 32, and subdivisions 28, 29, 32). A much looser relationship was found between the mean CPUE in the Gulf of Finland herring fi shery and the SSB estimate for the neighboring subdivision 29, which probably indicates again at the uncertainties in the SSB estimates for that subdivision. 262 Raid et al.—Stock Dynamics of Baltic Herring

Gulf of Riga

140,000 SSB 1200

120,000 CPUE 1000 100,000 800 80,000 600 60,000

400 CPUE, kg/h

SSB, Landings, t 40,000

20,000 200

0 0 1980 1985 1990 1995 2000

Subdivision 29 SSB 90,000 CPUE 1200 80,000 1000 70,000 60,000 800 50,000 600 40,000

30,000 400 CPUE, kg/g SSB, t Landings, 20,000 200 10,000 0 0 1980 1985 1990 1995 2000

SSB Subdivision 32 CPUE 80,000 800 70,000 700 60,000 600 50,000 500 40,000 400 30,000 300 CPUE, kg/h CPUE,

SSB, t Landings, 20,000 200 10,000 100 0 0 1991 1996 2001

Figure 3. Trends in SSB and CPUE of herring in the Gulf of Riga (ICES 2003), and in subdivisions 29 and 32. Fisheries Assessment and Management in Data-Limited Situations 263

Subdiv. 32 1200 Subdiv. 29 Gulf of Riga

R2 = 0.1271 1,000

R2 = 0.4925

800

600 kg/h

400

R2 = 0.6513

200

0 0 20,000 40,000 60,000 80,000 100,000 120,000 140,000 SSB, t

Figure 4. Scatter plots of CPUE and SSB estimates in subdivision 32, subdivision 29, and Gulf of Riga assessment units (1995-2002).

1,000

R2 = 0.5424 R2 = 0.4569 800

600 kg/h 400

Subdiv. 28,29,32

200 Subdiv. 25-29&32 excl. Gulf of Riga

0 150,000 250,000 350,000 450,000 550,000 650,000 750,000 SSB, t

Figure 5. Scatter plots of CPUE and SSB estimates in subdivisions 28, 29, and 32, and subdivisions 25-29 and 32 exclud- ing the Gulf of Riga assessment units (1995-2002). 264 Raid et al.—Stock Dynamics of Baltic Herring

Table 2. Mean and median catch per check in May-June in the pound-net fi shery in the Gulf of Riga (t).

Category 1995 1996 1997 1998 1999 2000 2001 2002

Mean 2.62 2.77 1.92 1.70 2.40 1.27 1.62 2.29 Median 2.61 2.85 1.80 1.71 2.34 1.06 1.61 2.19

3.00

2.50 Mean Median R2 = 0.1029

2.00 R2 = 0.0729

1.50 CPUE, t/check

1.00

0.50 60,000 70,000 80,000 90,000 100,000 110,000 120,000 130,000 140,000 SSB, t

Figure 6. Scatter plots of pound-net CPUE and SSB estimates for Gulf of Riga herring (1995-2002).

No relationship was revealed between the Gulf of Finland herring CPUE and SSB estimates of the Gulf of Riga herring. The absence of any correlation in that case is not surprising, because of the fundamentally diff erent pattern in stock developments in the Gulf of Finland and the Gulf of Riga (Fig. 3). Although there is a relatively good temporal coherence between com- mercial CPUE and herring SSB estimates, the use of commercial CPUE as an indicator for stock trend should be taken with caution because the CPUE estimation depends on the distribution pattern of fi sh, and some- times also on the behavior of the fi shing vessel captain. For example, Fisheries Assessment and Management in Data-Limited Situations 265

710,000 Gulf of Riga Subdivision 29 610,000 Subdivision 29 & 32 Excl. Gulf of Riga

510,000 R2 = 0.6234

410,000 SSB,t 310,000

R2 = 0.6989 210,000

R2 = 0.0058 110,000 R2 = 0.3875 10,000 0 200 400 600 800 kg/h

Figure 7. Mean trawl CPUE from subdivision 32 plotted against SSB estimates for diff erent assessment units (1995- 2002).

during daylight herring CPUE tends to be higher because herring are in dense shoals, whereas during the dark of night, herring are less dense and distributed more evenly. Hence, the source of CPUE data should be examined critically prior to including data in the assessment input.

Conclusions Baltic herring fi sheries are not limited by the amount of available data, but perhaps by the suitability of existing data. In particular, many of the Baltic herring fi sheries do not have suffi cient data to accurately describe relative trends in stock size. The tentative exercise of comparison of general trends in herring SSB estimates in diff erent assessment units in the northeastern Baltic, to commercial CPUE data from the pelagic trawl fi shery, show rather good fi ts in the case of units with less uncertain as- sessments. The CPUE data covering only a part of the remote section of the central Baltic herring stock follow the main trends in SSB estimates of the combined stock rather well, suggesting that further exploration of the possibilities of implementation of commercial CPUE data into assessment procedures of Baltic herring would be reasonable. 266 Raid et al.—Stock Dynamics of Baltic Herring

References Gulland, J. 1964. Catch per unit of eff ort as a measure of abundance. Rapp. P.-V. Reun. Cons. Int. Explor. Mer 155:8-14. Hamley, J.M., and T.P. Howley. 1985. Factors aff ecting variability of trapnet catches. Can. J. Fish. Aquat. Sci. 42:1079-1087. ICES. 2001a. Report of the Baltic Fisheries Assessment Working Group. ICES CM 2001/ACFM 18. 546 pp. ICES. 2001b. Report of the Study Group on Herring Assessment Units in the Baltic. ICES 2001 CM/ACFM 10. 25 pp. ICES. 2002. Report of the Baltic Fisheries Assessment Working Group. ICES CM 2002/ACFM 18. 554 pp. ICES. 2003. Report of the Fisheries Assessment Working Group. ICES CM 2003/ACFM 21. 527 pp. Järvik, A. 1989. Distribution pattern of individual catch per unit of eff ort data. ICES CM 1989/J 15. 11 pp. Järvik, A., and T. Raid. 2000. On biological, technical and socio-economical aspects of Baltic herring pound-net fi shery in Estonia. ICES 2000/J 18. 6 pp. Ojaveer, E. 1981. Marine pelagic fi shes. In: E. Voipio (ed.), The Baltic Sea. Elsevier Scientifi c Publishing Company, Oxford, pp. 276-292. Ojaveer, E. 2002. The role of ICES in the assessment and management of resources in the Baltic Sea. ICES Mar. Sci. Symp. 215:582-589. Raid, T. 2002. Stock complexity of herring: Another potential source of uncertain- ties in fi shing mortality estimates. ICES CM 2002/V 22. 21 pp. Reed, W.J. 1986. Analysing catch-eff ort data allowing for randomness in the catch- ing process. Can. J. Fish. Aquat. Sci. 43:174-186. Stephenson, R.L., K.J. Clark, M.J. Power, F.J. Fife, and G.D. Melvin. 2001. Herring stock structure, stock discreteness and biodiversity. In: F. Funk, J. Blackburn, D. Hay, A.J. Paul, R. Stephenson, R. Toresen, and D. Witherell (eds.), Herring: Expectations for a new millennium. Alaska Sea Grant College Program, Uni- versity of Alaska Fairbanks, pp. 559-571.