The Effects of Univalent Cations on the Inductive Formation of Nitrate Reductase and on the Level of Activity of Representative Nonadaptive Enzyme Are Presented
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Department of Biology, Report to the President 2016-2017
Department of Biology Academic year 2016–2017 was exciting and productive for the Department of Biology. The department is considered one of the best biological science departments in the world. Our superb faculty members are leaders in biological research and education. Some of the news regarding our faculty, research, and educational programs is highlighted below. Faculty Count and Departures During AY2017, the Department of Biology had 56 faculty members: 44 full professors, eight associate professors, and four assistant professors. Research homes are distributed among Building 68, the Broad Institute, the Koch Institute for Integrative Cancer Research, the Picower Institute for Learning and Memory, and the Whitehead Institute for Biomedical Research. In addition to 56 primary faculty members, there were six faculty members with secondary appointments in Biology. These joint faculty members provide important connections to other departments, including Brain and Cognitive Sciences, Chemistry, Biological Engineering, and Civil and Environmental Engineering. We are saddened by the loss of Professor Susan Lindquist, who passed away in October 2016. Hidde Ploegh (Whitehead Institute) moved to Children’s Hospital in January 2017. Professor William (Chip) Quinn (Biology/Brain and Cognitive Sciences) retired in July 2016. Faculty Awards Department of Biology faculty members are widely recognized for their contributions to the field. Among our core faculty are three Nobel Laureates, 30 members of the National Academy of Sciences, 28 members of the American Academy of Arts and Sciences, 14 fellows of the American Association for the Advancement of Science, four recipients of the National Science Foundation National Medal of Science, and 15 Howard Hughes Medical Institute (HHMI) investigators. -
69-10599 GOMES, Benedict, 1933
- - ~- ... - - - .- - _. - - .. ~. - - - I' This dissertation has been 69-10,599 microfilmed exactly as received GOMES, Benedict, 1933- BEEF LIVER MITOCHONDRIAL AMINE OXIDASE; PURIFICATION AND STUDIES ON SOME PHYSICAL AND CHEMICAL PROPERTIES. University of Hawaii, Ph.D., 1968 Biochemistry University Microfilms, Inc., Ann Arbor, Michigan BEEF LIVER MITOCHONDRIAL AMINE OXIDASE; PURIFICATION AND STUDIES ON SOME PHYSICAL AND CHEMICAL PROPERTIES A DISSERTATION SUBMITTED TO THE GRADUATE DIVISION OF THE UNIVERSITY OF HAWAII IN PARTIAL FULFILLMENT OF THE REQUIREMENTS FOR THE DEGREE OF DOCTOR OF PHILOSOPHY IN BIOCHEMISTRY SEPTEMBER 1968 by BENEDICT GOMES Dissertation Committee: Kerry T. Yasunobu, Chairman Morton Mandel Lawrence H. Piette Robert H. McKay John B. Hall DEDICATION TO MY MOTHER Acknowledgements To the East-West Center of the University of Hawaii; the National Institute of Health; and the Hawaii Heart Association for fellowships. To Drs. I. Igaue and H. J. Kloepfer for their assistance in the enzyme purification. To Mrs. Tomi Haehnlen and Kazi Sirazul Islam for drawing figures. TABLE OF CONTENTS LIST OF TABLES ••••••••••••••••••••••.•••••••••• vi LIST OF FIGURES •••••.•.••••••••••.••••••••••••. viii ABBREVIATIONS .••••••.•.•.••••••••••.••••••••••• xi ABSTRACT •..•.•.•.••.•••••••••••••••.••••••••••. xii I. INTRODUCTION. •••.•.•••.••••••••..•••••••••. 1 A. Historical Background of Amine 2 Oxidase Studies •••..••••••••••.•••• B. Physiological Significance •.••••••• 5 C. Statement of the Problem........... 6 II. MATERIALS AND METHODS .•••••••.••••••••••.•• -
The World Turns to Us
The world turns to us 2009 Annual Report 75 years and still advancing Company Profi le Beckman Coulter develops, manufactures and markets products that simplify, automate and innovate complex biomedical testing. Our diagnostic systems are found in hospitals and other critical care settings around the world and produce information used by physicians to diagnose disease, make treatment decisions and monitor patients. Scientists use our life science research instruments to study complex biological problems including causes of disease and potential new therapies or drugs. Hospital laboratories are our core clinical diagnostic customers. Our life science customers include pharmaceutical and biotechnology companies, medical schools and research institutions. Beckman Coulter has an installed base of more than 200,000 clinical and research systems operating in laboratories around the world. About 81% of Beckman Coulter’s $3.3 billion annual revenue comes from recurring sources, such as consumable supplies (including reagent test kits), service and lease payments. Beckman Coulter 2009 Annual Report P1 For 75 years, the world has turned to us to help fi nd answers to the mysteries of medical science. We’re proud to say we’ve solved many of them. Today, with a focus on recurring revenue growth, operating excellence and quality, we are delivering steady results to shareholders even in these uncertain times. Our unwavering dedication to improving patient health and reducing the cost of care defi nes who we are. Our track record of creating the industry’s most productive products and our broad and growing capabilities in the core laboratory clearly position us as a leader in biomedical testing. -
Metabolism of Neoplastic Tissue II. a Survey of Enzymes of the Citric Acid Cycle in Transplanted Tumors*
Metabolism of Neoplastic Tissue II. A Survey of Enzymes of the Citric Acid Cycle in Transplanted Tumors* CHARLES E. WENNER,t MORRIS A. SPIRTES, AND SIDNEY WEINHOUSE (The Lankenau Hospital Research institute and the Instituiefor Cancer Research, and the Department of Chemistry, Temple University, Philadelphia, Pa.) Recent isotopic tracer studies of tumor metabo on homogenates of the whole tissue or on extracts lism indicated that the neoplastic cell can carry out of acetone powders. All assays were carried out in the complete oxidation of glucose and fatty acids the zero order range of substrate concentration via the citric acid cycle (84, 85). In view of a strong and with proportionality of enzyme activity and body of evidence against the occurrence of the tissue concentration—these conditions having Krebs cycle in tumors (18, 19), further information been established by preliminary experiments. De bearing on this problem seemed desirable. Accord tails of the procedures are given in the individual ingly, a survey was undertaken of various trans sections and in the table headings. The prepara planted neoplasms for their content of citric acid tions of homogenates will be described in the indi cycle enzymes. In order to obtain a “profile―of vidual assays. The acetone powder extracts were enzymatic activity, approximate assays were car prepared as follows : the freshly dissected tissue ned out of those enzymes for which straightfor (pooled from four to six animals) was homogenized ward methods were available; these included for 1 minute at 2°C. in a Waring Blendor with 2 malic, isocitric, and a-ketoglutaric dehydroge volumes of acetone. -
Erwin Chargaff 1905–2002
NATIONAL ACADEMY OF SCIENCES ERWIN CHARGAFF 1 9 0 5 – 2 0 0 2 A Biographical Memoir by SEYMOUR S. COHEN with selected bibliography by ROBERT LEHMAN Any opinions expressed in this memoir are those of the authors and do not necessarily reflect the views of the National Academy of Sciences. Biographical Memoir 2010 NATIONAL ACADEMY OF SCIENCES WASHINGTON, D.C. ERWIN CHARGAFF August 11, 1905–June 20, 2002 BY SEYMOUR S . COHEN 1 AND ROBERT LEHMAN N 1944, AS VARIOUS ARMIES WERE planning to invade central IEurope, the recently naturalized U.S. citizen and Columbia University biochemist had learned of the report of O. T. Avery and his colleagues that the deoxyribonucleic acid (DNA) of a specific strain of pneumococcus constituted the genetically specific hereditary determinant of that bacterium. Almost alone among the scientists of the time, Chargaff accepted the unusual Avery report and concluded that genetic differ- ences among DNAs must be reflected in chemical differences among these substances. He was actually the first biochemist to reorganize his laboratory to test this hypothesis, which he went on to prove by 1949. His results and the subsequent work on the nature of DNA and heredity transformed biomedical research and training for the next fifty years at least, and established potentialities for the development of biology, which have created economic entities and opportunities, as well as major ethical and political controversies. Trained as an analytical chemist, Chargaff had never imagined that he would help to solve a major cytological problem. Reprinted with the permission from Proceedings of the American Philosophical Society (vol. -
Chemical Heritage Foundation Boris Magasanik
CHEMICAL HERITAGE FOUNDATION BORIS MAGASANIK Transcript of an interview Conducted by Sondra Schlesinger In three sessions between 1993 and 1995 This interview has been designated as Free Access. One may view, quote from, cite, or reproduce the oral history with the permission of CHF. Please note: Users citing this interview for purposes of publication are obliged under the terms of the Chemical Heritage Foundation Oral History Program to credit CHF using the format below: Boris Magasanik, interview by Sondra Schlesinger, 1993-1995 (Philadelphia: Chemical Heritage Foundation, Oral History Transcript # 0186). Chemical Heritage Foundation Oral History Program 315 Chestnut Street Philadelphia, Pennsylvania 19106 The Chemical Heritage Foundation (CHF) serves the community of the chemical and molecular sciences, and the wider public, by treasuring the past, educating the present, and inspiring the future. CHF maintains a world-class collection of materials that document the history and heritage of the chemical and molecular sciences, technologies, and industries; encourages research in CHF collections; and carries out a program of outreach and interpretation in order to advance an understanding of the role of the chemical and molecular sciences, technologies, and industries in shaping society. BORIS MAGASANIK 1919 Born in Kharkoff, Russia, on December 19 Education 1941 B.S., biochemistry, City College of New York 1948 Ph.D., biochemistry, Columbia University Professional Experience Columbia University 1948-1949 Research Assistant, Department -
Front Matter (PDF)
COLD SPRING HARBOR SYMPOSIA ON QUANTITATIVE BIOLOGY VOLUME XXVI COLD SPRING HARBOR SYMPOSIA ON QUANTITATIVE BIOLOGY Founded in 1933 by REGINALD G. HARRIS Director o/ the Biological Laboratory 1924 to 1936 The Symposia were organized and managed by Dr. Harris until his death. Their continued use- /ulness is a tribute to the soundness o/ his vision. The Symposium volumes are published by the Long Island Biological Association as a part of the work of the Biological Laboratory Cold Spring Harbor, L.I., New York COLD SPRING HARBOR SYMPOSIA ON QUANTITATIVE BIOLOGY VOLUME XXVI Cellular Regulatory Mechanisms THE BIOLOGICAL LABORATORY COLD SPRING HARBOR, L.I., NEW YORK 1961 COPYRIGHT 1962 BY THE BIOLOGICAL LABORATORY LONG ISLAND BIOLOGICAL ASSOCIATION, INC. Library of Congress Catalog Number: 34-8174 All rights reserved. This book may not be reproduced in whole or in part except by reviewers for the public press without written permission from the publisher PRINTED BY WAVERLY PRESS, INC., BALTIMORE,MARYLAND, U.S.A. FOREWORD During the past twenty years, research in genetics and biochemistry, while superficially directed toward an understanding of different aspects of cell behavior, has been moving to a union which appears to have been completed in the presen- tations at this symposium on Cell Regulatory Mechanisms. Sessions were devoted to the role of the genetic material as an information code in protein synthesis and the mechanism of information transfer from DNA to the site of synthesis. Major attention was devoted to cellular mechanisms governing the rates of enzyme ac- tivity and enzyme synthesis. While most of the research presented dealt with microorganisms, the significance of these efforts for questions of normal and ab- normal growth and development in multicellular forms is quite apparent. -
Active Efflux of Tetracycline Encoded by Four Genetically Different
Proc. Natl. Acad. Sci. USA Vol. 77, No. 7, pp. 3974-3977, July 1980 Biochemistry Active efflux of tetracycline encoded by four genetically different tetracycline resistance determinants in Escherichia coli (everted membrane vesicles/tetracycline transport/transposon TnlO/plasmids) LAURA MCMURRY, RICHARD E. PETRUCCI, JR., AND STUART B. LEVY* Department of Molecular Biology and Microbiology and Department of Medicine, Tufts University School of Medicine, Boston, Massachusetts 02111 Communicated by Boris Magasanik, April 21, 1980 ABSTRACT Tetracycline resistance encoded by four ge- at least partly reversed by energy inhibitors (11), which sug- netically different determinants residing on plasmids in Esch- gested that energy was required for the lowered tetracycline erichia coli was shown to be associated in each case with an accumulation. Using everted membrane vesicles, we now energy-dependent decrease in accumulation of the antibiotic containing any one of four ge- in whole cells in which resistance had been induced. The dif- demonstrate that resistant cells ferent class determinants examined were those on plasmids RP1 netically different plasmid-borne tetracycline resistance de- (class A), R222 (class B), R144 (class C), and RAI (class D). This terminants (5) possess an active efflux system for this antibi- decrease in accumulation was attributable to an active efflux, otic. because everted (inside-out) membrane vesicles made from tetracycline-induced E. coli cells containing any one of the four MATERIALS AND METHODS plasmids were shown to concentrate tetracycline by an active Bacterial Strains and Plasmids. The prototroph E. coli strain influx. This active uptake was not seen in inside-out vesicles from P. D. from sensitive cells or uninduced R222-containing cells. -
Chemistry 5 (Instrumental)
CHEMISTRY 5 (INSTRUMENTAL) AGRICULTURAL BIOTECHNOLOGY, LEVEL 2 By Associate Prof. Mohamed Frahat Foda 2021.04.08 CONTENTS • What is a spectrophotometer? • Principle of Spectrophotometer • Instrumentation of Spectrophotometer •Prisms. •Grating. • Applications • References WHAT IS A SPECTROPHOTOMETER? • A spectrophotometer is an instrument that measures the concentration of solutes in solution by measuring the amount of light absorbed by the sample in a cuvette at any selected wavelength. • A spectrophotometer is a process where we measured absorption and transmittance of monochromatic light in terms of ratio or a function of the ratio, of the radiant power of the two beams as a functional of spectral wavelength. These two beams may be separated in time, space or both. It operates on Beer’s law Link labcompare.com SPECTROPHOTOMETER SPECTROPHOTOMETER: ▪ PRINCIPLE, ▪ INSTRUMENTATION, ▪ APPLICATIONS ➢ Scientist Arnold O. Beckman and his colleagues at the National Technologies Laboratory (NTL) invented the Beckman DU spectrophotometer in 1940. https://microbenotes.com/ • The spectrophotometer technique is to measure light intensity as a function of wavelength. It does this by diffracting the light beam into a spectrum of wavelengths, detecting the intensities with a charge-coupled device, and displaying the results as a graph on the detector and then on the display device. 1.In the spectrophotometer, a prism (or) grating is used to split the incident beam into different wavelengths. 2.By suitable mechanisms, waves of specific wavelengths can be manipulated to fall on the test solution. The range of the wavelengths of the incident light can be as low as 1 PRINCIPLE to 2nm. 3.The spectrophotometer is useful for measuring the absorption spectrum of a compound, that is, the absorption of light by a solution at each wavelength. -
AAS and ICP-AES Analysis of the Iron-Sulfur Cluster in Yojg (Napf) Protein of Aeg-46.5 Operon in Escherichia Coli
Notes Bull. Korean Chem. Soc. 2003, Vol. 24, No. 12 1849 AAS and ICP-AES Analysis of the Iron-sulfur Cluster in YojG (NapF) Protein of aeg-46.5 Operon in Escherichia coli Hyo Ryung Kim, Yong Chan Lee, Jae Seon Won, and Mu Hyeon Choe* College of Life Science and Graduate School of Biotechn이ogy, Korea University, Seoul 136-701, Korea Received September 27, 2003 Key Words : YojG, NapF, aeg-46.5, Iron-sulfur cluster, Electron transfer The E. coli aeg-46.5 region was identified by anaerobically second major family of electron carrier besides cytochromes. expressed lacZ fusions.1,3 In the course of the E. coli These proteins were shown to contain complexes of iron and genome-sequencing project, Richterich et al.4 identified a cysteinate (Cys) sulfur atoms and to incorporate inorganic or chromosomal gene cluster in the centisome 49 region that acid-labile sulfur in the form of two-and four iron clusters. contains several open reading frames (ORFs) with strong They are ubiquitous in living matter and contain sites with similarity to the cytochrome c biosynthesis genes of one or eight iron atoms, sometimes with multiple occur Bradyrhizobium japonicum and Rhodobacter capsulatus? rences of the smaller clusters in the same protein molecule.11 These ORFs (yej WVUTSRQP) appear to represent the 3'- In this study, the yojG gene from #372 of Kohara library half of the putative aeg-46.5 operon, whose expression was was cloned into pMAL-c2 vector to prepare the YojG protein shown to be induced under anaerobic growth conditions in and analyze the iron-sulfur contents of the protein with the presence of nitrate and nitrite and it was proposed to call sensitive chemical detection method. -
Transcriptional Repression at a Distance Through Exclusion of Activator Binding in Vivo
Proc. Natl. Acad. Sci. USA Vol. 94, pp. 790–795, February 1997 Biochemistry Transcriptional repression at a distance through exclusion of activator binding in vivo MITSUHIRO SHIMIZU*†,WEISHI LI‡,HEISABURO SHINDO*, AND AARON P. MITCHELL†‡ *School of Pharmacy, Tokyo University of Pharmacy and Life Science, 1432-1 Horinouchi, Hachioji, Tokyo 192-03, Japan; and ‡Department of Microbiology and Institute of Cancer Research, Columbia University, New York, NY 10032 Communicated by Boris Magasanik, Massachusetts Institute of Technology, Cambridge, MA, December 3, 1996 (received for review October 8, 1996) ABSTRACT The yeast repressor Rme1p acts from distant Repression by Rme1p is unusual in that it is exerted over a binding sites to block transcription of the chromosomal IME1 considerable distance. The Rme1p binding sites lie over 1600 gene. Rme1p can also repress the heterologous CYC1 promoter bp upstream of IME1 RNA start sites and over 600 bp when Rme1p binding sites are placed 250–300 bp upstream of upstream of the IME1 upstream activation sequence (UAS) CYC1 transcriptional activator binding sites (UAS1 and region (refs. 16 and 17; see Fig. 1A). Other yeast repressors UAS2). Here, in vivo footprinting studies indicate that Rme1p generally act over smaller distances in chromosomal promoter acts over this distance by preventing the binding of the CYC1 regions (18–20). Repression depends upon both Rme1p bind- transcriptional activators to UAS1 and UAS2. Inhibition of ing sites and upon flanking chromosomal sequences. A min- activator binding by Rme1p has the same genetic require- imal region for repression has been defined through insertions ments as repression: both depend upon sequences flanking the of IME1 sequences upstream of a CYC1-lacZ reporter gene Rme1p binding sites and upon Rgr1p and Sin4p, two subunits (13). -
How Microbial Proteomics Got Startedã
Proteomics 2011, 11, 2943–2946 DOI 10.1002/pmic.201000780 2943 REVIEW How microbial proteomics got startedà Frederick C. Neidhardt Department of Microbiology and Immunology, University of Michigan Medical School, Ann Arbor, MI, USA Publication in 1975 by Patrick O’Farrell of a procedure to separate the proteins of Escherichia Received: December 13, 2010 coli in a two-dimensional array on polyacrylamide gels marked the birth of the field now Accepted: January 18, 2011 called proteomics. Although O’Farrell’s contribution was soon to have wide ranging effects on research in many fields, the initial impact was greatest in the arena of whole cell physiology. Refinements and amplification of the original procedure, including improved standardization and reproducibility of gel patterns, introduction of techniques to measure the quantity of protein in individual spots, and biochemical identification of the protein spots, afforded investigators the ability to explore for the first time the integrated working of control circuits in the living cell. From O’Farrell’s contribution has grown the rich array of techniques currently employed and still being developed in the diverse field of microbial proteomics. Keywords: Integrative biology / Microbial physiology / Microbiology / Proteomics origin It is an honor to be asked to write an introductory review on microbial proteomics in 1975 would forever change the the origin of microbial proteomics for this special issue of direction of bacterial physiology. Some colleagues are Proteomics. Professor Michael Hecker, himself a pioneer in mentionedy those whose proximity to the author allowed the field, has graciously invited me to say whatever I wish in us to share the excitement of the times.