Distributed Computing in Practice: the Condor Experience
Total Page:16
File Type:pdf, Size:1020Kb
Load more
Recommended publications
-
Distributed & Cloud Computing: Lecture 1
Distributed & cloud computing: Lecture 1 Chokchai “Box” Leangsuksun SWECO Endowed Professor, Computer Science Louisiana Tech University [email protected] CTO, PB Tech International Inc. [email protected] Class Info ■" Class Hours: noon-1:50 pm T-Th ! ■" Dr. Box’s & Contact Info: ●"www.latech.edu/~box ●"Phone 318-257-3291 ●"Email: [email protected] Class Info ■" Main Text: ! ●" 1) Distributed Systems: Concepts and Design By Coulouris, Dollimore, Kindberg and Blair Edition 5, © Addison-Wesley 2012 ●" 2) related publications & online literatures Class Info ■" Objective: ! ●"the theory, design and implementation of distributed systems ●"Discussion on abstractions, Concepts and current systems/applications ●"Best practice on Research on DS & cloud computing Course Contents ! •" The Characterization of distributed computing and cloud computing. •" System Models. •" Networking and inter-process communication. •" OS supports and Virtualization. •" RAS, Performance & Reliability Modeling. Security. !! Course Contents •" Introduction to Cloud Computing ! •" Various models and applications. •" Deployment models •" Service models (SaaS, PaaS, IaaS, Xaas) •" Public Cloud: Amazon AWS •" Private Cloud: openStack. •" Cost models ( between cloud vs host your own) ! •" ! !!! Course Contents case studies! ! •" Introduction to HPC! •" Multicore & openMP! •" Manycore, GPGPU & CUDA! •" Cloud-based EKG system! •" Distributed Object & Web Services (if time allows)! •" Distributed File system (if time allows)! •" Replication & Disaster Recovery Preparedness! !!!!!! Important Dates ! ■" Apr 10: Mid Term exam ■" Apr 22: term paper & presentation due ■" May 15: Final exam Evaluations ! ■" 20% Lab Exercises/Quizzes ■" 20% Programming Assignments ■" 10% term paper ■" 20% Midterm Exam ■" 30% Final Exam Intro to Distributed Computing •" Distributed System Definitions. •" Distributed Systems Examples: –" The Internet. –" Intranets. –" Mobile Computing –" Cloud Computing •" Resource Sharing. •" The World Wide Web. •" Distributed Systems Challenges. Based on Mostafa’s lecture 10 Distributed Systems 0. -
Distributed Algorithms with Theoretic Scalability Analysis of Radial and Looped Load flows for Power Distribution Systems
Electric Power Systems Research 65 (2003) 169Á/177 www.elsevier.com/locate/epsr Distributed algorithms with theoretic scalability analysis of radial and looped load flows for power distribution systems Fangxing Li *, Robert P. Broadwater ECE Department Virginia Tech, Blacksburg, VA 24060, USA Received 15 April 2002; received in revised form 14 December 2002; accepted 16 December 2002 Abstract This paper presents distributed algorithms for both radial and looped load flows for unbalanced, multi-phase power distribution systems. The distributed algorithms are developed from tree-based sequential algorithms. Formulas of scalability for the distributed algorithms are presented. It is shown that computation time dominates communication time in the distributed computing model. This provides benefits to real-time load flow calculations, network reconfigurations, and optimization studies that rely on load flow calculations. Also, test results match the predictions of derived formulas. This shows the formulas can be used to predict the computation time when additional processors are involved. # 2003 Elsevier Science B.V. All rights reserved. Keywords: Distributed computing; Scalability analysis; Radial load flow; Looped load flow; Power distribution systems 1. Introduction Also, the method presented in Ref. [10] was tested in radial distribution systems with no more than 528 buses. Parallel and distributed computing has been applied More recent works [11Á/14] presented distributed to many scientific and engineering computations such as implementations for power flows or power flow based weather forecasting and nuclear simulations [1,2]. It also algorithms like optimizations and contingency analysis. has been applied to power system analysis calculations These works also targeted power transmission systems. [3Á/14]. -
Push-Based Job Submission Using Reverse SSH Connections
rvGAHP – Push-Based Job Submission using Reverse SSH Connections Scott Callaghan Gideon Juve Karan Vahi University of Southern California USC Information Sciences Institute USC Information Sciences Institute Los Angeles, California Marina Del Rey, California Marina Del Rey, California [email protected] [email protected] [email protected] Philip J. Maechling Thomas H. Jordan Ewa Deelman University of Southern California University of Southern California USC Information Sciences Institute Los Angeles, California Los Angeles, California Marina Del Rey, California [email protected] [email protected] [email protected] ABSTRACT using Reverse SSH Connections. In WORKS’17: WORKS’17: 12th Workshop Computational science researchers running large-scale scientific on Workflows in Support of Large-Scale Science, November 12–17, 2017, Denver, CO, USA. ACM, New York, NY, USA, 8 pages. https://doi.org/10.1145/3150994. workflow applications often want to run their workflows onthe 3151003 largest available compute systems to improve time to solution. Workflow tools used in distributed, heterogeneous, high perfor- mance computing environments typically rely on either a push- 1 INTRODUCTION based or a pull-based approach for resource provisioning from these Modern scientific applications typically require the execution of compute systems. However, many large clusters have moved to multiple codes, may include computational and data dependencies, two-factor authentication for job submission, making traditional au- and contain varied computational models ranging from a bag of tomated push-based job submission impossible. On the other hand, tasks to a monolithic parallel code. These applications are often pull-based approaches such as pilot jobs may lead to increased com- complex software suites with substantial computational and data plexity and a reduction in node-hour efficiency. -
Grid Computing: What Is It, and Why Do I Care?*
Grid Computing: What Is It, and Why Do I Care?* Ken MacInnis <[email protected]> * Or, “Mi caja es su caja!” (c) Ken MacInnis 2004 1 Outline Introduction and Motivation Examples Architecture, Components, Tools Lessons Learned and The Future Questions? (c) Ken MacInnis 2004 2 What is “grid computing”? Many different definitions: Utility computing Cycles for sale Distributed computing distributed.net RC5, SETI@Home High-performance resource sharing Clusters, storage, visualization, networking “We will probably see the spread of ‘computer utilities’, which, like present electric and telephone utilities, will service individual homes and offices across the country.” Len Kleinrock (1969) The word “grid” doesn’t equal Grid Computing: Sun Grid Engine is a mere scheduler! (c) Ken MacInnis 2004 3 Better definitions: Common protocols allowing large problems to be solved in a distributed multi-resource multi-user environment. “A computational grid is a hardware and software infrastructure that provides dependable, consistent, pervasive, and inexpensive access to high-end computational capabilities.” Kesselman & Foster (1998) “…coordinated resource sharing and problem solving in dynamic, multi- institutional virtual organizations.” Kesselman, Foster, Tuecke (2000) (c) Ken MacInnis 2004 4 New Challenges for Computing Grid computing evolved out of a need to share resources Flexible, ever-changing “virtual organizations” High-energy physics, astronomy, more Differing site policies with common needs Disparate computing needs -
Introduction to Python University of Oxford Department of Particle Physics
Particle Physics Cluster Infrastructure Introduction University of Oxford Department of Particle Physics October 2019 Vipul Davda Particle Physics Linux Systems Administrator Room 661 Telephone: x73389 [email protected] Particle Physics Computing Overview 1 Particle Physics Linux Infrastructure Distributed File System gluster NFS /data Worker Nodes /data/atlas /data/lhcb NFS HTCondor /home Batch Server Interactive Servers physics_s/eduroam Network Printer Managed Laptops Managed Desktops Particle Physics Computing Overview 2 Introduction to the Unix Operating System Unix is a Multi-User/Multi-Tasking operating system. Developed in 1969 at AT&T’s Bell Labs by Ken Thompson (Unix) Dennis Ritchie (C) Unix is written in C programming language. Unix was originally a command-line OS, but now has a graphical user interface. It is available in many different forms: Linux , Solaris, AIX, HP-UX, freeBSD It is a well-suited environment for program development: C, C++, Java, Fortran, Python… Unix is mainly used on large servers for scientific applications. Particle Physics Computing Overview 3 Linux Distributions Source: https://www.muylinux.com/2009/04/24/logos-de-distribuciones-gnulinux/ Particle Physics Computing Overview 4 Particle Physics Linux Infrastructure Particle Physics uses CentOS Linux on the cluster. It is a free version of RedHat Enterprise Linux. Particle Physics Computing Overview 5 Basic Linux Commands Particle Physics Computing Overview 6 Basic Linux Commands o ls - list directory contents ls –l - long listing -
The Translational Journey of the Htcondor-CE
Journal of Computational Science xxx (xxxx) xxx Contents lists available at ScienceDirect Journal of Computational Science journal homepage: www.elsevier.com/locate/jocs Principles, technologies, and time: The translational journey of the HTCondor-CE Brian Bockelman a,*, Miron Livny a,b, Brian Lin b, Francesco Prelz c a Morgridge Institute for Research, Madison, USA b Department of Computer Sciences, University of Wisconsin-Madison, Madison, USA c INFN Milan, Milan, Italy ARTICLE INFO ABSTRACT Keywords: Mechanisms for remote execution of computational tasks enable a distributed system to effectively utilize all Distributed high throughput computing available resources. This ability is essential to attaining the objectives of high availability, system reliability, and High throughput computing graceful degradation and directly contribute to flexibility, adaptability, and incremental growth. As part of a Translational computing national fabric of Distributed High Throughput Computing (dHTC) services, remote execution is a cornerstone of Distributed computing the Open Science Grid (OSG) Compute Federation. Most of the organizations that harness the computing capacity provided by the OSG also deploy HTCondor pools on resources acquired from the OSG. The HTCondor Compute Entrypoint (CE) facilitates the remote acquisition of resources by all organizations. The HTCondor-CE is the product of a most recent translational cycle that is part of a multidecade translational process. The process is rooted in a partnership, between members of the High Energy Physics community and computer scientists, that evolved over three decades and involved testing and evaluation with active users and production infrastructures. Through several translational cycles that involved researchers from different organizations and continents, principles, ideas, frameworks and technologies were translated into a widely adopted software artifact that isresponsible for provisioning of approximately 9 million core hours per day across 170 endpoints. -
Computing at Massive Scale: Scalability and Dependability Challenges
This is a repository copy of Computing at massive scale: Scalability and dependability challenges. White Rose Research Online URL for this paper: http://eprints.whiterose.ac.uk/105671/ Version: Accepted Version Proceedings Paper: Yang, R and Xu, J orcid.org/0000-0002-4598-167X (2016) Computing at massive scale: Scalability and dependability challenges. In: Proceedings - 2016 IEEE Symposium on Service-Oriented System Engineering, SOSE 2016. 2016 IEEE Symposium on Service-Oriented System Engineering (SOSE), 29 Mar - 02 Apr 2016, Oxford, United Kingdom. IEEE , pp. 386-397. ISBN 9781509022533 https://doi.org/10.1109/SOSE.2016.73 (c) 2016 IEEE. Personal use of this material is permitted. Permission from IEEE must be obtained for all other users, including reprinting/ republishing this material for advertising or promotional purposes, creating new collective works for resale or redistribution to servers or lists, or reuse of any copyrighted components of this work in other works. Reuse Unless indicated otherwise, fulltext items are protected by copyright with all rights reserved. The copyright exception in section 29 of the Copyright, Designs and Patents Act 1988 allows the making of a single copy solely for the purpose of non-commercial research or private study within the limits of fair dealing. The publisher or other rights-holder may allow further reproduction and re-use of this version - refer to the White Rose Research Online record for this item. Where records identify the publisher as the copyright holder, users can verify any specific terms of use on the publisher’s website. Takedown If you consider content in White Rose Research Online to be in breach of UK law, please notify us by emailing [email protected] including the URL of the record and the reason for the withdrawal request. -
Lecture 18: Parallel and Distributed Systems
Lecture 18: Parallel and What is a distributed system? Distributed Systems n From various textbooks: u “A distributed system is a collection of independent computers n Classification of parallel/distributed that appear to the users of the system as a single computer.” architectures u “A distributed system consists of a collection of autonomous n SMPs computers linked to a computer network and equipped with n Distributed systems distributed system software.” u n Clusters “A distributed system is a collection of processors that do not share memory or a clock.” u “Distributed systems is a term used to define a wide range of computer systems from a weakly-coupled system such as wide area networks, to very strongly coupled systems such as multiprocessor systems.” 1 2 What is a distributed system?(cont.) What is a distributed system?(cont.) n Michael Flynn (1966) P1 P2 P3 u n A distributed system is Network SISD — single instruction, single data u SIMD — single instruction, multiple data a set of physically separate u processors connected by MISD — multiple instruction, single data u MIMD — multiple instruction, multiple data one or more P4 P5 communication links n More recent (Stallings, 1993) n Is every system with >2 computers a distributed system?? u Email, ftp, telnet, world-wide-web u Network printer access, network file access, network file backup u We don’t usually consider these to be distributed systems… 3 4 MIMD Classification parallel and distributed Classification of the OS of MIMD computers Architectures tightly loosely coupled -
Hybrid Computing – Co-Processors/Accelerators Power-Aware Computing – Performance of Applications Kernels
C-DAC Four Days Technology Workshop ON Hybrid Computing – Co-Processors/Accelerators Power-aware Computing – Performance of Applications Kernels hyPACK-2013 (Mode-1:Multi-Core) Lecture Topic : Multi-Core Processors : Algorithms & Applications Overview - Part-II Venue : CMSD, UoHYD ; Date : October 15-18, 2013 C-DAC hyPACK-2013 Multi-Core Processors : Alg.& Appls Overview Part-II 1 Killer Apps of Tomorrow Application-Driven Architectures: Analyzing Tera-Scale Workloads Workload convergence The basic algorithms shared by these high-end workloads Platform implications How workload analysis guides future architectures Programmer productivity Optimized architectures will ease the development of software Call to Action Benchmark suites in critical need for redress C-DAC hyPACK-2013 Multi-Core Processors : Alg.& Appls Overview Part-II 2 Emerging “Killer Apps of Tomorrow” Parallel Algorithms Design Static and Load Balancing Mapping for load balancing Minimizing Interaction Overheads in parallel algorithms design Data Sharing Overheads C-DAC hyPACK-2013 Multi-Core Processors : Alg.& Appls Overview Part-II 3 Emerging “Killer Apps of Tomorrow” Parallel Algorithms Design (Contd…) General Techniques for Choosing Right Parallel Algorithm Maximize data locality Minimize volume of data Minimize frequency of Interactions Overlapping computations with interactions. Data replication Minimize construction and Hot spots. Use highly optimized collective interaction operations. Collective data transfers and computations • Maximize Concurrency. -
Cost Model: Work, Span and Parallelism 1 Overview of Cilk
CSE 539 01/15/2015 Cost Model: Work, Span and Parallelism Lecture 2 Scribe: Angelina Lee Outline of this lecture: 1. Overview of Cilk 2. The dag computation model 3. Performance measures 4. A simple greedy scheduler 1 Overview of Cilk A brief history of Cilk technology In this class, we will overview various parallel programming technology developed. One of the technology we will examine closely is Cilk, a C/C++ based concurrency platform. Before we overview the development and implementation of Cilk, we shall first overview a brief history of Cilk technology to account for where the major concepts originate. Cilk technology has developed and evolved over more than 15 years since its origin at MIT. The text under this subheading is partially abstracted from the “Cilk” entry in Encyclopedia of Distributed Computing [14] with the author’s consent. I invite interested readers to go through the original entry for a more complete review of the history. Cilk (pronounced “silk”) is a linguistic and runtime technology for algorithmic multithreaded programming originally developed at MIT. The philosophy behind Cilk is that a programmer should concentrate on structuring her or his program to expose parallelism and exploit locality, leaving Cilk’s runtime system with the responsibility of scheduling the computation to run effi- ciently on a given platform. The Cilk runtime system takes care of details like load balancing, synchronization, and communication protocols. Cilk is algorithmic in that the runtime system guarantees efficient and predictable performance. Important milestones in Cilk technology include the original Cilk-1 [2,1, 11], 1 Cilk-5 [7, 18,5, 17], and the commercial Cilk++ [15] by Cilk Arts. -
Difference Between Grid Computing Vs. Distributed Computing
Difference between Grid Computing Vs. Distributed Computing Definition of Distributed Computing Distributed Computing is an environment in which a group of independent and geographically dispersed computer systems take part to solve a complex problem, each by solving a part of solution and then combining the result from all computers. These systems are loosely coupled systems coordinately working for a common goal. It can be defined as 1. A computing system in which services are provided by a pool of computers collaborating over a network. 2. A computing environment that may involve computers of differing architectures and data representation formats that share data and system resources. Distributed Computing, or the use of a computational cluster, is defined as the application of resources from multiple computers, networked in a single environment, to a single problem at the same time - usually to a scientific or technical problem that requires a great number of computer processing cycles or access to large amounts of data. Picture: The concept of distributed computing is simple -- pull together and employ all available resources to speed up computing. The key distinction between distributed computing and grid computing is mainly the way resources are managed. Distributed computing uses a centralized resource manager and all nodes cooperatively work together as a single unified resource or a system. Grid computingutilizes a structure where each node has its own resource manager and the system does not act as a single unit. Definition of Grid Computing The Basic idea between Grid Computing is to utilize the ideal CPU cycles and storage of millions of computer systems across a worldwide network function as a flexible, pervasive, and inexpensive accessible pool that could be harnessed by anyone who needs it, similar to the way power companies and their users share the electrical grid. -
Distributed GPU-Based K-Means Algorithm for Data-Intensive Applications: Large-Sized Image Segmentation Case
(IJACSA) International Journal of Advanced Computer Science and Applications, Vol. 8, No. 12, 2017 Distributed GPU-Based K-Means Algorithm for Data-Intensive Applications: Large-Sized Image Segmentation Case Hicham Fakhi*, Omar Bouattane, Mohamed Youssfi, Hassan Ouajji Signals, Distributed Systems and Artificial Intelligence Laboratory ENSET, University Hassan II, Casablanca, Morocco Abstract—K-means is a compute-intensive iterative Nonetheless, there are two important factors to consider algorithm. Its use in a complex scenario is cumbersome, when doing image segmentation. First is the number of images specifically in data-intensive applications. In order to accelerate to be processed in a given use case. Second is the image quality the K-means running time for data-intensive application, such as which has known an important evolution during the last few large sized image segmentation, we use a distributed multi-agent years, i.e., the number of pixels that make up an image has system accelerated by GPUs. In this K-means version, the input been multiplied by 200 from the 720 x 480 pixels to 9600 x image data are divided into subsets of image data which can be 7200 pixels. This has resulted in a much better definition of the performed independently on GPUs. In each GPU, we offloaded image (more detail visibility) and more nuances in the colors the data assignment and the K-centroids recalculation steps of and shades. the K-means algorithm for a massively parallel processing. We have implemented this K-means version on the Nvidia GPU with Thus, during last decade, image processing techniques have Compute Unified Device Architecture.