Transgenic Plant Journal ©2007 Global Science Books
Novel Findings of Defensins and their Utilization in Construction of Transgenic Plants
André M. Murad • Patrícia B. Pelegrini • Simone M. Neto • Octavio L. Franco*
Centro de Análises Proteômicas e Bioquí micas, Pós-Graduação em Ciências Genômicas e Biotecnologia, Universidade Católica de Brasília, SGAN Quadra 916, Modulo B, Av. W5 Norte 70.790-160 Asa Norte Brasília/DF, Brazil Corresponding author : * [email protected] ABSTRACT
Defensins are small peptides with a common structure, the cysteine-stabilized / motif. These molecules are found in diverse organisms, such as plants, mammals and insects and can be active against a wide range of pathogens, including fungi and bacteria. Moreover, defensins are also able to inhibit digestive enzymes, protein synthesis and the activity of ion channels. In this field, defensins have also become an alternative strategy for pest biocontrol, being active against several insects such as bean bruchids. Hence, the development of biotechnology has led to the application of defensins in plant improvement, enhanced pest resistance and increased crop production. Furthermore, they are also being used in the pharmaceutical field for development of novel antibiotics and fungicides active against pathogenic microorganisms. This review describes the latest information in defensin structure and function, and also brings insights for this peptide’s biotechnological use, through transgenic strategies, in agriculture and pharmacy. ______
Keywords: crop resistance, defensins, transgenic plants Abbreviations: AMPs, antimicrobial proteins; CS , cysteine-stabilized- – motif; HTH, helix turn helix motif
CONTENTS
INTRODUCTION...... 39 STRUCTURAL FEATURES OF DEFENSINS...... 40 INSECTICIDAL PEPTIDES: DEFENCE PLANT MECHANISMS TOWARDS INSECT-PESTS ...... 42 -Amylase inhibitors ...... 42 Proteinase inhibitors ...... 42 PLANT DEFENSINS WITH BACTERICIDAL ACTIVITY ...... 43 PLANT DEFENSINS WITH FUNGICIDAL ACTIVITY...... 44 HOW CAN DEFENSINS IMPROVE THE RESISTANCE OF TRANSGENIC PLANTS?...... 44 CONCLUDING REMARKS ...... 46 REFERENCES...... 46 ______
INTRODUCTION proteins and peptides are the most involved molecules. Among these peptides are included plant defensins, small In the last few years, a variety of biotechnological tools has cationic peptides of 45-54 amino acid residues, very stable being developed to decrease the resistance of nocive pests to temperature and pH variations (Terras et al. 1995; Seli- and pathogens that predate plants and mammals towards trennikoff 2001). Although their primary sequences are not chemical products administrated against them. One of these well conserved between different species, they present a amazing techniques consists in the possibility of inserting, very similar three-dimensional structure, composed by an - silencing or over-expressing different genes in plants, cre- helix, followed by three -sheets and stabilized by four ating an organism with enhanced resistance to pathogens, disulfide bonds (Bloch et al. 1998; Romagnoli et al. 2003; and clearly improving crop production (Bhargava et al. Villa-Perelló et al. 2003). This conserved structure is also 2007; Sesmero et al. 2007). Transgenic technology has known as the cysteine-stabilized / motif, which was also brought high technological science to crop science, not only found in insect defensins and scorpion neurotoxins (Cornet for plant resistance towards pests and pathogens, but also in et al. 1995; Krezel et al. 1995). They have been isolated order to produce biofactors to create novel compounds with from seeds, flowers, leaves, roots and stems from a diverse importance for industry. One example is the bioplastic range of plant species, always showing a role in plant de- polyhydroxyalkanoate, a molecule used to substitute the fence against different pathogens (Selitrennikoff 2001). non-biodegradable petroleum-derived plastic, being now Hence, plant defensins can be divided into two main produced in large scale by genetically modified plants groups, according to their functions: antimicrobial and en- (Suriyamongkol et al. 2007). zyme inhibitor peptides. The first group is composed by But, which molecules should we choose to study and antifungal and antibacterial defensins and includes most of apply in biotechnology? Plants have a powerful defence the peptides isolated so far (Janssen et al. 2003; Lay et al. mechanism, conferring systemic resistance against patho- 2003; Franco et al. 2006). They are able to inhibit one gens. This resistance is acquired during plant evolution and specific microorganism, from Gram-negative and Gram- co-evolution processes (Gatehouse et al. 1992), in which positive bacteria to yeast and filamentous fungi (Terras et al.
Received: 28 February, 2007. Accepted: 3 May, 2007. Invited Review
Transgenic Plant Journal 1(1), 39-48 ©2007 Global Science Books
1993; Thevissen et al. 1996), and can also inhibit the (Fant et al. 1998; Almeida et al. 2002; Janssen et al. 2003; growth of about 2-5 different pathogens such as Staphylo- Lay et al. 2003), insect defensin (idA) and Cp-thionin II coccus aureus, Escherichia coli and Pseudomonas syrin- showed antibacterial activity against S. aureus, E. coli and P. gae (Franco et al. 2006). The second group corresponds to syringae (Cornet et al. 1995; Franco et al. 2006) and 1-H defensins able to inhibit proteinases and/or -amylases and Vrd1 are protein synthesis inhibitors for cell-free or- from different sources. Mainly, these defensin inhibitors ganisms, that act against bacteria, protozoa and fungi (Bruix have demonstrated specificity to enzymes from insect mid- et al. 1993; Liu et al. 2006). Moreover, Vrd1 also acts as an guts, such as from Callosobruchus maculatus and Tenebrio -amylase inhibitor (Bruix et al. 1993) and CP-thionin I is molitor (Melo et al. 2002; Farias et al. 2007). an unusual proteinase inhibitor (Melo et al. 2002). So, an Although there are many plant defensins described in important question arises. If all of them have the same struc- the literature, their mechanism of action against antimicro- ture but show different functions, then how do they in fact bial and/or enzyme inhibitors is not well understood. Some act in plant defence? hypotheses have been reported and are gradually being con- To answer that question, several efforts have been made firmed (Thevissen et al. 2005; Liu et al. 2006). The applic- in the last few years in order to elucidate it (Almeida et al. ation of plant defensins in biotechnology for development 2002; Pelegrini et al. 2005; Jenssen et al. 2006) in spite of of resistant plants and pharmaceutical purposes has helped the true mechanism of action still being uncharacterised. To researchers to explore the way in which these peptides act illustrate the problem, Fig. 1 shows a defensin primary and also substitute the use of synthetic molecules for prod- structure alignment generated by ClustalW software ucts from protein sources in agriculture, medicine and (Thompson et al. 1994) and edited using the Jalview prog- industry. In this review, we describe the main features of ram (Clamp et al. 2004). Except for Phd1, plant defensins plant defensins, focusing on the application of their func- have four extremely conserved disulphide bonds (Almeida tions and structural features in biotechnology and genetic et al. 2002; Pelegrini et al. 2005). Otherwise, defensins engineering. apparently maintain low primary sequence identities, even those with the same function properties (Fig. 1). As an ex- STRUCTURAL FEATURES OF DEFENSINS ception, Phd1 presents an uncommon feature: a fifth Cys- Cys linkage that confers a more thermodynamic stability The three dimensional structure of several plant defensins (Janssen et al. 2003). Therefore, Table 1 shows the Root have been elucidated in the last few years by nuclear mag- Mean Square (RMS) deviation of all defensins structures in netic resonance (NMR), clearly improving the structure- relationship to CP-thionin II calculated by PyMOL (de Lano functional knowledge. Among them, Pisum sativum defen- 2002). Lower values indicate a higher similarity. These sin 1 (Psd1) (Almeida et al. 2002), Raphanus sativus anti- values demonstrate that all structures are basically identical, fungal protein 1 (Rs-AFP1) (Fant et al. 1998), Vigna radi- indicating a low tertiary structure variation between these ata defensin 1 (Vrd1) (Liu et al. 2006), 1-hordothionin peptides. Finally, Fig. 2A shows a superimpose image of se- (g1-H) from barley and 1-purothionin (g1-P) from wheat veral defensins, demonstrating once more the tertiary struc- endosperm (Bruix et al. 1993), Petunia hybrida defensin 1 ture similarities between them. These characteristics were (Phd1) (Janssen et al. 2003) and Nicotiana alata defensin 1 also observed by Almeida et al. (2002), who tried to cor- (Nad1) (Lay et al. 2003) structures were solved. Moreover, relate function versus structure of Psd1, when compared to molecular modelling was also used for defensins structure different defensins. A profound examination of the tertiary characterization such as CP-thionin I and II from V. ungui- structure (Fig. 2A) demonstrates two variable regions ob- culata seeds (Melo et al. 2002; Franco et al. 2006). It is served on loops 1 and 2 (Fig, 2A-1, 2A-2). These sites seem well known that plant defensins share a common structure, to be extremely important in some specific defensin func- the cysteine-stabilized / (CS ) motif, which is com- tions such as -amylase and proteinase inhibitory activities posed of three antiparallel -sheets and one -helix. This (Melo et al. 2002; Liu et al. 2006), potassium channel motif was also found in insect defensins (Cornet et al. blockage (Krezel et al. 1995) and probably antifungal and 1995) and in scorpion neurotoxins as the potassium channel bactericidal activities (Fant et al. 1998; Almeida et al. 2002; blocker named agitoxin 2 (Krezel et al. 1995). Despite all Franco et al. 2006). Almeida et al. (2002) suggest that basic of these peptides being related and sharing a similar struc- conserved residues in loop 1 and hydrophobic residues on tural core, an enormous functional variation has been ob- loop 2 may distinguish plant defensins with and without served. Psd1, Rs-AFP1, Phd1 and Nad1 showed antifungal antifungal activity. This property was previously explored activities against Neurospora crassa, Alternaria longipes, by Fant et al. (1998), which created an Rs-AFP1 mutant, Botrytis cinerea and Fusarium oxysporum respectively shifting the basic residue to a neutral one (Lys44Gln). This
1 2
3
4 5 L1 L2
Fig. 1 Primary structure alignment of defensins with activity of 1) proteinase inhibitor, 2) antibacterial, 3) antifungal, 4) protein synthesis inhibitor and 5) neurotoxin potassium channel inhibitor. Black lines at the top indicate disulfide bonds. PDB access codes were provided after protein names. Cylinders indicate -helices. Arrows indicates -sheets. Loops are represented by a black line.
40 Defensins and their use in transgenic plants. Murad et al.
Table 1 Root mean square (RMS) deviation values and electrostatic potentials (e-pot) of defensin’s tertiary structure. RMS values were calculated in relation to CP-thionin II matched residues only. A lower value corresponds to greater identity. Electrostatic potential were calculated in a vacuum. Both were calculated using PyMOL software. Defensin CP-thioninII idA Psd1 Rs-AFP1 Phd1 Nad1 Vrd1 G1-H agi2 RMS - 1.667 1.974 1.782 1.401 1.974 0.238 1.241 1.031 e-pot ±67.3 ±47.5 ±54.1 ±49.2 ±67.1 ±54.1 ±75.2 ±81.8 ±73.9
lated using PyMOL. In Table 1 there are the maximum and minimum values of the electrostatic potential (e-pot) for charged regions, blue, for positive charged, and red, for negative charged, that can be observed in Fig. 2B. Inside of each surface there are cartoon defensin images. Analysing each group separately, we could observe that antibacterial types, CP-thionin II and idA, have an e-pot of ±67.3 and ±47.5, respectively. CP-thionin II has an elevated positive charged region at the side and bottom of the defensin. On the contrary, idA shows more non-polar regions. Antifungal defensins Psd1, Rs-AFP1, Phd1 and Nad1 possess e-pots of ±54.1, ±49.2, ±67.1 and ±59.7, respectively. Rs-AFP1 has positive charged regions on the upper right and on the left side of the peptide and Phd1 on the upper right side. Nad1 has positive charges on both lower and upper sides. Psd1 is the only defensin that has a more negatively charged region on the lower surface. Protein synthesis inhibitors Vrd1 and 1-H have ±75.2 and ±81.8 e-pot values. Both are similar with respect to their surface structures, but 1-H has a more concentrated positively charged surface on the lower side. Finally, agi2 neurotoxin has an e-pot value of ±73.9. agi2 is the most amphipatic peptide showing a positively charged side and a non-polar one. This data clearly indicates that for now, it is impossible to drawn a possible function/structure pattern for each group, since almost all properties are ob- served in all groups. For example, in different groups we have the same charge surface, as observed in the potassium channel inhibitor and antifungal group (Fig. 2B), Vrd1 has more charged residues then CP-thionin II, but a very similar structure with an RMS of 0.238 (Table 2). This implies that almost identical proteins do not have the same functions. Of course those small differences could occur in e-pot values for some peptides, but they are unable to explain major cases. Therefore, the determination of complex activities, such as bactericidal activities, has been considered a Her- culean task, especially due to infinity of possible mecha- nisms of action. Among them we could include peptide aggregation, binding to lipids in micelle-like complexes, as well several models predicted as toroidal pores, carpets and barrel staves (Pelegrini and Franco 2005; Jenssen et al. 2006). In those specific cases, an enormous variation in the surface structure can be found. These data could clearly be observed in agi2, which showed almost the same CP-thionin II e-pot and also possesses the same important basic resi- dues on the loops (Krezel et al. 1995; Franco et al. 2006) but does not have an antibacterial function. Does CP-thionin II act as a potassium channel inhibitor or show another un- published function? Almeida et al. (2002) believe that Psd1 may act also as potassium channel blocker based on similar surfaces with agi2 (Fig. 2B), but until now, this is an un- solved question. By using these data, we raised an impor- Fig. 1 Defensins tertiary structures. (A) Superimposition of all struc- tant hypothesis: defensins may act with multiple functions. tures. 1 and 1x represents loop 1 and loop closer view, same for 2 and 2x. For example, Vrd1 may act both with -amylase inhibitor (B) Eletrostatic potential map of defensins. Each one was rotated 90° and antifungal and CP-thionin II acts through its antibac- clockwise. Blue corresponds to positive charged regions. Red corresponds terial activity but may possess another function as an inhi- to negative charged regions. PyMOL software was used for image ac- bitor of the potassium channel in spite of a highly posi- quiring. tively charged region equally found on scorpion neurotoxin agi2 (Fig. 2B). Thus, how to find a pattern to group them? This is still the main question remaining to be answered, specific alteration leads to a complete loss of Rs-AFP1 acti- and it is possible that a combination of surface-exposed resi- vity. But, once those plant defensins need to expose basic dues and different protein sizes and shapes could be the residues for a crucial activity, what feature may distinguish solution for this unsolved mystery. the function of these peptides? The charge surface of each one could help to elucidate this question. In Fig. 2B several electrostatic potential surface images of each defensin rotated 90° clockwise are shown, calcu-
41 Transgenic Plant Journal 1(1), 39-48 ©2007 Global Science Books
INSECTICIDAL PEPTIDES: DEFENCE PLANT enzyme. Therefore, VrD1 was able to form hydrogen bonds MECHANISMS TOWARDS INSECT-PESTS with three amino acid residues from the T. molitor active site (Glu222, Asp287, and Asp332) and also showed that the se- Plants are constantly susceptible to pests and pathogens, be- cond loop was important for interaction and enzyme inhi- ing both deleterious agents responsible for severe crop los- bition (Liu et al. 2006). The same mechanism was observed ses. These predators have an interest in carbohydrates, pro- by a -hordothionin ( -H) from barley (Mendes et al. 1990; teins and lipids, stored in seeds and other plant tissues, pro- Liu et al. 2006). It could be observed that Loop 2 from -H viding them the main sources of metabolic energy (Moreira inserts into the active site of TMA, impeding the entrance of et al. 2005). Nevertheless, plants have developed defense the substrate. Moreover, it was found that positively charged mechanisms to avoid insect intrusion usually being limited residues in Loops 1 and 2 (Lys12 and Arg38 in VrD1, Arg39 by the number of predators with an ability to feed on a and Arg40 in -H) are important for interaction with - specific plant. Actually, this resistance consists of several amylases (Mendes et al. 1990; Liu et al. 2006), which did defense mechanisms, acquired during plant evolution and not occur with plant defensins that have a short Loop 2. The co-evolution processes (Gatehouse et al. 1992). Hence, mechanism of action for insecticidal plant defensins is not during the last years, proteins and peptides have been stu- completely understood, but another hypothesis for the died as defense molecules. In this field, plant defensins mechanism of action has been proposed, being related to the belonging to a selected group of plant proteins with enzyme essentiality of the Ca2+ ion for some insect -amylase acti- inhibition activity. They are able to inhibit -amylase or vity (Pelegrini et al. 2006). In this sense some authors have proteinases from insects and, in some cases, show an abi- suggested that defensins are able to chelate calcium, desta- lity to inhibit both trypsin and chymotrypsin (as reviewed bilizing the enzyme and further causing its inhibition (Cas- by Pelegrini and Franco 2005, Table 2). tro and Vernon 2003; Pelegrini and Franco 2005).