Automatic Differentiation in ML: Where We Are and Where We Should Be Going
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Theano: a Python Framework for Fast Computation of Mathematical Expressions (The Theano Development Team)∗
Theano: A Python framework for fast computation of mathematical expressions (The Theano Development Team)∗ Rami Al-Rfou,6 Guillaume Alain,1 Amjad Almahairi,1 Christof Angermueller,7, 8 Dzmitry Bahdanau,1 Nicolas Ballas,1 Fred´ eric´ Bastien,1 Justin Bayer, Anatoly Belikov,9 Alexander Belopolsky,10 Yoshua Bengio,1, 3 Arnaud Bergeron,1 James Bergstra,1 Valentin Bisson,1 Josh Bleecher Snyder, Nicolas Bouchard,1 Nicolas Boulanger-Lewandowski,1 Xavier Bouthillier,1 Alexandre de Brebisson,´ 1 Olivier Breuleux,1 Pierre-Luc Carrier,1 Kyunghyun Cho,1, 11 Jan Chorowski,1, 12 Paul Christiano,13 Tim Cooijmans,1, 14 Marc-Alexandre Cotˆ e,´ 15 Myriam Cotˆ e,´ 1 Aaron Courville,1, 4 Yann N. Dauphin,1, 16 Olivier Delalleau,1 Julien Demouth,17 Guillaume Desjardins,1, 18 Sander Dieleman,19 Laurent Dinh,1 Melanie´ Ducoffe,1, 20 Vincent Dumoulin,1 Samira Ebrahimi Kahou,1, 2 Dumitru Erhan,1, 21 Ziye Fan,22 Orhan Firat,1, 23 Mathieu Germain,1 Xavier Glorot,1, 18 Ian Goodfellow,1, 24 Matt Graham,25 Caglar Gulcehre,1 Philippe Hamel,1 Iban Harlouchet,1 Jean-Philippe Heng,1, 26 Balazs´ Hidasi,27 Sina Honari,1 Arjun Jain,28 Sebastien´ Jean,1, 11 Kai Jia,29 Mikhail Korobov,30 Vivek Kulkarni,6 Alex Lamb,1 Pascal Lamblin,1 Eric Larsen,1, 31 Cesar´ Laurent,1 Sean Lee,17 Simon Lefrancois,1 Simon Lemieux,1 Nicholas Leonard,´ 1 Zhouhan Lin,1 Jesse A. Livezey,32 Cory Lorenz,33 Jeremiah Lowin, Qianli Ma,34 Pierre-Antoine Manzagol,1 Olivier Mastropietro,1 Robert T. McGibbon,35 Roland Memisevic,1, 4 Bart van Merrienboer,¨ 1 Vincent Michalski,1 Mehdi Mirza,1 Alberto Orlandi, Christopher Pal,1, 2 Razvan Pascanu,1, 18 Mohammad Pezeshki,1 Colin Raffel,36 Daniel Renshaw,25 Matthew Rocklin, Adriana Romero,1 Markus Roth, Peter Sadowski,37 John Salvatier,38 Franc¸ois Savard,1 Jan Schluter,¨ 39 John Schulman,24 Gabriel Schwartz,40 Iulian Vlad Serban,1 Dmitriy Serdyuk,1 Samira Shabanian,1 Etienne´ Simon,1, 41 Sigurd Spieckermann, S. -
Practical Deep Learning
Practical deep learning December 12-13, 2019 CSC – IT Center for Science Ltd., Espoo Markus Koskela Mats Sjöberg All original material (C) 2019 by CSC – IT Center for Science Ltd. This work is licensed under a Creative Commons Attribution-ShareAlike 4.0 Unported License, http://creativecommons.org/licenses/by-sa/4.0 All other material copyrighted by their respective authors. Course schedule Thursday Friday 9.00-10.30 Lecture 1: Introduction 9.00-9.45 Lecture 5: Deep to deep learning learning frameworks 10.30-10.45 Coffee break 9.45-10.15 Lecture 6: GPUs and batch jobs 10.45-11.00 Exercise 1: Introduction to Notebooks, Keras 10.15-10.30 Coffee break 11.00-11.30 Lecture 2: Multi-layer 10.30-12.00 Exercise 5: Image perceptron networks classification: dogs vs. cats; traffic signs 11.30-12.00 Exercise 2: Classifica- 12.00-13.00 Lunch break tion with MLPs 13.00-14.00 Exercise 6: Text catego- 12.00-13.00 Lunch break riZation: 20 newsgroups 13.00-14.00 Lecture 3: Images and convolutional neural 14.00-14.45 Lecture 7: Cloud, GPU networks utiliZation, using multiple GPU 14.00-14.30 Exercise 3: Image classification with CNNs 14.45-15.00 Coffee break 14.30-14.45 Coffee break 15.00-16.00 Exercise 7: Using multiple GPUs 14.45-15.30 Lecture 4: Text data, embeddings, 1D CNN, recurrent neural networks, attention 15.30-16.00 Exercise 4: Text sentiment classification with CNNs and RNNs Up-to-date agenda and lecture slides can be found at https://tinyurl.com/r3fd3st Exercise materials are at GitHub: https://github.com/csc-training/intro-to-dl/ Wireless accounts for CSC-guest network behind the badges. -
Chapter 2 Core Basics
Chapter 2 Core Basics In this chapter we introduce some of the basic concepts that are important for understanding what is to follow. We also introduce a few of the fundamental operations that are involved in the vast majority of useful programs. 2.1 Literals and Types Section 1.3 introduced the string literal. A string literal is a collection of characters enclosed in quotes. In general, a literal is code that exactly represents a value. In addition to a string literal, there are numeric literals. There are actually a few different types of numeric values in Python. There are integer values which correspond to whole numbers (i.e., the countable numbers that lack a fractional part). In Python, an integer is known as an int. A number that can have a fractional part is called a float (a float corresponds to a real number). For example, 42 is an int while 3.14 is a float. The presence of the decimal point makes a number a float—it doesn’t matter if the fractional part is zero. For example, the literal 3.0, or even just 3., are also floats1 despite the fact that these numbers have fractional parts of zero.2 There are some important differences between how computers work with ints and floats. For example, ints are stored exactly in the computer while, in general, floats are only stored approximately. This is a consequence of the fact that we are entering numbers as decimal numbers, i.e., numbers in the base 10 counting system, but the computer stores these numbers internally as a finite number of binary (base 2) digits. -
Lecture 3: Its Time to See the C
Computer Science 61C Spring 2017 Friedland and Weaver Lecture 3: Its time to see the C... 1 Agenda Computer Science 61C Spring 2017 Friedland and Weaver • Computer Organization • Compile vs. Interpret • C vs Java 2 ENIAC (U.Penn., 1946) First Electronic General-Purpose Computer Computer Science 61C Spring 2017 Friedland and Weaver • Blazingly fast (multiply in 2.8ms!) • 10 decimal digits x 10 decimal digits • But needed 2-3 days to setup new program, as programmed with patch cords and switches • At that time & before, "computer" mostly referred to people who did calculations 3 EDSAC (Cambridge, 1949) First General Stored-Program Computer Computer Science 61C Spring 2017 Friedland and Weaver • Programs held as numbers in memory • This is the revolution: It isn't just programmable, but the program is just the same type of data that the computer computes on • 35-bit binary 2’s complement words 4 Components of a Computer Computer Science 61C Spring 2017 Friedland and Weaver Memory Processor Input Enable? Read/Write Control Program Datapath Address PC Bytes Write Registers Data Arithmetic & Logic Unit Read Data Output (ALU) Data Processor-Memory Interface I/O-Memory Interfaces 5 Great Idea: Levels of Representation/Interpretation Computer Science 61C Spring 2017 Friedland and Weaver temp = v[k]; High Level Language v[k] = v[k+1]; We are here! Program (e.g., C) v[k+1] = temp; lw $t0, 0($2) Compiler Anything can be represented lw $t1, 4($2) Assembly Language as a number, sw $t1, 0($2) Program (e.g., MIPS) i.e., data or instructions sw $t0, 4($2) -
Comparative Study of Caffe, Neon, Theano, and Torch
Workshop track - ICLR 2016 COMPARATIVE STUDY OF CAFFE,NEON,THEANO, AND TORCH FOR DEEP LEARNING Soheil Bahrampour, Naveen Ramakrishnan, Lukas Schott, Mohak Shah Bosch Research and Technology Center fSoheil.Bahrampour,Naveen.Ramakrishnan, fixed-term.Lukas.Schott,[email protected] ABSTRACT Deep learning methods have resulted in significant performance improvements in several application domains and as such several software frameworks have been developed to facilitate their implementation. This paper presents a comparative study of four deep learning frameworks, namely Caffe, Neon, Theano, and Torch, on three aspects: extensibility, hardware utilization, and speed. The study is per- formed on several types of deep learning architectures and we evaluate the per- formance of the above frameworks when employed on a single machine for both (multi-threaded) CPU and GPU (Nvidia Titan X) settings. The speed performance metrics used here include the gradient computation time, which is important dur- ing the training phase of deep networks, and the forward time, which is important from the deployment perspective of trained networks. For convolutional networks, we also report how each of these frameworks support various convolutional algo- rithms and their corresponding performance. From our experiments, we observe that Theano and Torch are the most easily extensible frameworks. We observe that Torch is best suited for any deep architecture on CPU, followed by Theano. It also achieves the best performance on the GPU for large convolutional and fully connected networks, followed closely by Neon. Theano achieves the best perfor- mance on GPU for training and deployment of LSTM networks. Finally Caffe is the easiest for evaluating the performance of standard deep architectures. -
Tensorflow, Theano, Keras, Torch, Caffe Vicky Kalogeiton, Stéphane Lathuilière, Pauline Luc, Thomas Lucas, Konstantin Shmelkov Introduction
TensorFlow, Theano, Keras, Torch, Caffe Vicky Kalogeiton, Stéphane Lathuilière, Pauline Luc, Thomas Lucas, Konstantin Shmelkov Introduction TensorFlow Google Brain, 2015 (rewritten DistBelief) Theano University of Montréal, 2009 Keras François Chollet, 2015 (now at Google) Torch Facebook AI Research, Twitter, Google DeepMind Caffe Berkeley Vision and Learning Center (BVLC), 2013 Outline 1. Introduction of each framework a. TensorFlow b. Theano c. Keras d. Torch e. Caffe 2. Further comparison a. Code + models b. Community and documentation c. Performance d. Model deployment e. Extra features 3. Which framework to choose when ..? Introduction of each framework TensorFlow architecture 1) Low-level core (C++/CUDA) 2) Simple Python API to define the computational graph 3) High-level API (TF-Learn, TF-Slim, soon Keras…) TensorFlow computational graph - auto-differentiation! - easy multi-GPU/multi-node - native C++ multithreading - device-efficient implementation for most ops - whole pipeline in the graph: data loading, preprocessing, prefetching... TensorBoard TensorFlow development + bleeding edge (GitHub yay!) + division in core and contrib => very quick merging of new hotness + a lot of new related API: CRF, BayesFlow, SparseTensor, audio IO, CTC, seq2seq + so it can easily handle images, videos, audio, text... + if you really need a new native op, you can load a dynamic lib - sometimes contrib stuff disappears or moves - recently introduced bells and whistles are barely documented Presentation of Theano: - Maintained by Montréal University group. - Pioneered the use of a computational graph. - General machine learning tool -> Use of Lasagne and Keras. - Very popular in the research community, but not elsewhere. Falling behind. What is it like to start using Theano? - Read tutorials until you no longer can, then keep going. -
Fashionable Modelling with Flux
Fashionable Modelling with Flux Michael J Innes Elliot Saba Keno Fischer Julia Computing, Inc. Julia Computing, Inc. Julia Computing, Inc. Edinburgh, UK Cambridge, MA, USA Cambridge, MA, USA [email protected] [email protected] [email protected] Dhairya Gandhi Marco Concetto Rudilosso Julia Computing, Inc. University College London Bangalore, India London, UK [email protected] [email protected] Neethu Mariya Joy Tejan Karmali Birla Institute of Technology and Science National Institute of Technology Pilani, India Goa, India [email protected] [email protected] Avik Pal Viral B. Shah Indian Institute of Technology Julia Computing, Inc. Kanpur, India Cambridge, MA, USA [email protected] [email protected] Abstract Machine learning as a discipline has seen an incredible surge of interest in recent years due in large part to a perfect storm of new theory, superior tooling, renewed interest in its capabilities. We present in this paper a framework named Flux that shows how further refinement of the core ideas of machine learning, built upon the foundation of the Julia programming language, can yield an environment that is simple, easily modifiable, and performant. We detail the fundamental principles of Flux as a framework for differentiable programming, give examples of models that are implemented within Flux to display many of the language and framework-level features that contribute to its ease of use and high productivity, display internal compiler techniques used to enable the acceleration and performance that lies at arXiv:1811.01457v3 [cs.PL] 10 Nov 2018 the heart of Flux, and finally give an overview of the larger ecosystem that Flux fits inside of. -
Unary Operator
Introduction to Python Operations and Variables 1 Topics 1) Arithmetic Operations 2) Floor Division vs True Division 3) Modulo Operator 4) Operator Precedence 5) String Concatenation 6) Augmented Assignment 2 Arithmetic Operations 3 Mixing Types Any expression that two floats produce a float. x = 17.0 – 10.0 print(x) # 7.0 When an expression’s operands are an int and a float, Python automatically converts the int to a float. x = 17.0 – 10 print(x) # 7.0 y = 17 – 10.0 print(y) # 7.0 4 True Division vs Floor Division The operator / is true division and the operator // returns floor division(round down after true divide). True divide / always gives the answer as a float. print(23 // 7) # 3 print(3 // 9) # 0 print(-4 // 3) # -2 print(6 / 5) # 1.2 print(6 / 3) # 2.0 NOT 2! 5 Remainder with % The % operator computes the remainder after floor division. • 14 % 4 is 2 • 218 % 5 is 3 3 43 4 ) 14 5 ) 218 12 20 2 18 15 3 Applications of % operator: • Obtain last digit of a number: 230857 % 10 is 7 • Obtain last 4 digits: 658236489 % 10000 is 6489 • See whether a number is odd: 7 % 2 is 1, 42 % 2 is 0 6 Modulo Operator The operator % returns the modulus which is the remainder after floor division. print(18 % 5) # 3 print(2 % 9) # 2, if first number is smaller, it's the answer print(125 % 10) # 5 print(0 % 10) # 0 print(10 % 0) # ZeroDivisionError 7 Why floor/modulo division is useful Floor division allows us to extract the integer part of the division while the modulo operator extracts the remainder part of the division. -
The Big Picture
The Bigger Picture John Urbanic Parallel Computing Scientist Pittsburgh Supercomputing Center Copyright 2021 Building Blocks So far, we have used Fully Connected and Convolutional layers. These are ubiquitous, but there are many others: • Fully Connected (FC) • Convolutional (CNN) • Residual (ResNet) [Feed forward] • Recurrent (RNN), [Feedback, but has vanishing gradients so...] • Long Short Term Memory (LSTM) • Transformer (Attention based) • Bidirectional RNN • Restricted Boltzmann Machine • • Several of these are particularly common... Wikipedia Commons Residual Neural Nets We've mentioned that disappearing gradients can be an issue, and we know that deeper networks are more powerful. How do we reconcile these two phenomenae? One, very successful, method is to use some feedforward. Courtesy: Chris Olah• Helps preserve reasonable gradients for very deep networks • Very effective at imagery • Used by AlphaGo Zero (40 residual CNN layers) in place of previous complex dual network • 100s of layers common, Pushing 1000 #Example: input 3-channel 256x256 image x = Input(shape=(256, 256, 3)) y = Conv2D(3, (3, 3))(x) z = keras.layers.add([x, y]) Haven't all of our Keras networks been built as strict layers in a sequential method? Indeed, but Keras supports a functional API that provides the ability to define network that branch in other ways. It is easy and here (https://www.tensorflow.org/guide/keras/functional) is an MNIST example with a 3 dense layers. More to our current point, here (https://www.kaggle.com/yadavsarthak/residual-networks-and-mnist) is a neat experiment that uses 15(!) residual layers to do MNIST. Not the most effective approach, but it works and illustrates the concept beautifully. -
Theano Tutorial
Theano Tutorial Theano is a software package which allows you to write symbolic code and compile it onto different architectures (in particular, CPU and GPU). It was developed by machine learning researchers at the University of Montreal. Its use is not limited to machine learning applications, but it was designed with machine learning in mind. It's especially good for machine learning techniques which are CPU-intensive and benefit from parallelization (e.g. large neural networks). This tutorial will cover the basic principles of Theano, including some common mental blocks which come up. It will also cover a simple multi-layer perceptron example. A more thorough Theano tutorial can be found here: http://deeplearning.net/software/theano/tutorial/ Any comments or suggestions should be directed to me or feel free to submit a pull request. In [1]: %matplotlib inline In [2]: # Ensure python 3 forward compatibility from __future__ import print_function import numpy as np import matplotlib.pyplot as plt import theano # By convention, the tensor submodule is loaded as T import theano.tensor as T Basics Symbolic variables In Theano, all algorithms are defined symbolically. It's more like writing out math than writing code. The following Theano variables are symbolic; they don't have an explicit value. In [3]: # The theano.tensor submodule has various primitive symbolic variable types. # Here, we're defining a scalar (0-d) variable. # The argument gives the variable its name. foo = T.scalar('foo') # Now, we can define another variable bar which is just foo squared. bar = foo**2 # It will also be a theano variable. -
Deep Learning Software Security and Fairness of Deep Learning SP18 Today
Deep Learning Software Security and Fairness of Deep Learning SP18 Today ● HW1 is out, due Feb 15th ● Anaconda and Jupyter Notebook ● Deep Learning Software ○ Keras ○ Theano ○ Numpy Anaconda ● A package management system for Python Anaconda ● A package management system for Python Jupyter notebook ● A web application that where you can code, interact, record and plot. ● Allow for remote interaction when you are working on the cloud ● You will be using it for HW1 Deep Learning Software Deep Learning Software Caffe(UCB) Caffe2(Facebook) Paddle (Baidu) Torch(NYU/Facebook) PyTorch(Facebook) CNTK(Microsoft) Theano(U Montreal) TensorFlow(Google) MXNet(Amazon) Keras (High Level Wrapper) Deep Learning Software: Most Popular Caffe(UCB) Caffe2(Facebook) Paddle (Baidu) Torch(NYU/Facebook) PyTorch(Facebook) CNTK(Microsoft) Theano(U Montreal) TensorFlow(Google) MXNet(Amazon) Keras (High Level Wrapper) Deep Learning Software: Today Caffe(UCB) Caffe2(Facebook) Paddle (Baidu) Torch(NYU/Facebook) PyTorch(Facebook) CNTK(Microsoft) Theano(U Montreal) TensorFlow(Google) MXNet(Amazon) Keras (High Level Wrapper) Mobile Platform ● Tensorflow Lite: ○ Released last November Why do we use deep learning frameworks? ● Easily build big computational graphs ○ Not the case in HW1 ● Easily compute gradients in computational graphs ● GPU support (cuDNN, cuBLA...etc) ○ Not required in HW1 Keras ● A high-level deep learning framework ● Built on other deep-learning frameworks ○ Theano ○ Tensorflow ○ CNTK ● Easy and Fun! Keras: A High-level Wrapper ● Pass on a layer of instances in the constructor ● Or: simply add layers. Make sure the dimensions match. Keras: Compile and train! Epoch: 1 epoch means going through all the training dataset once Numpy ● The fundamental package in Python for: ○ Scientific Computing ○ Data Science ● Think in terms of vectors/Matrices ○ Refrain from using for loops! ○ Similar to Matlab Numpy ● Basic vector operations ○ Sum, mean, argmax…. -
A Simple Tutorial on Theano
A Simple Tutorial on Theano Jiang Guo Outline • What’s Theano? • How to use Theano? – Basic Usage: How to write a theano program – Advanced Usage: Manipulating symbolic expressions • Case study 1: Logistic Regression • Case study 2: Multi-layer Perceptron • Case study 3: Recurrent Neural Network WHAT’S THEANO? Theano is many things • Programming Language • Linear Algebra Compiler • Python library – Define, optimize, and evaluate mathematical expressions involving multi-dimensional arrays. • Note: Theano is not a machine learning toolkit, but a mathematical toolkit that makes building downstream machine learning models easier. – Pylearn2 Theano features • Tight integration with NumPy • Transparent use of a GPU • Efficient symbolic differentiation • Speed and stability optimizations • Dynamic C code generation Project Status • Theano has been developed and used since 2008, by LISA lab at the University of Montreal (leaded by Yoshua Bengio) – Citation: 202 (LTP: 88) • Deep Learning Tutorials • Machine learning library built upon Theano – Pylearn2 • Good user documentation – http://deeplearning.net/software/theano/ • Open-source on Github Basic Usage HOW TO USE THEANO? Python in 1 Slide • Interpreted language • OO and scripting language • Emphasizes code readability • Large and comprehensive standard library • Indentation for block delimiters • Dynamic type • Dictionary – d={‘key1’:‘val1’, ‘key2’:42, …} • List comprehension – [i+3 for i in range(10)] NumPy in 1 Slide • Basic scientific computing package in Python on the CPU • A powerful N-dimensional