Age-Specific Inbreeding Depression and Components of Genetic
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Autism, Genetics, and Inbreeding: an Evolutionary View
Vol. 8(5), pp. 67-71, May 2016 DOI: 10.5897/JPHE2015.0764 Article Number: 5670C9357949 Journal of Public Health and ISSN 2141-2316 Copyright © 2016 Epidemiology Author(s) retain the copyright of this article http://www.academicjournals.org/JPHE Review Autism, genetics, and inbreeding: An evolutionary view Alex S. Prayson National Council on Rehabilitation Education Received 18 July, 2015; Accepted 22 January, 2016 Recently there have been increased reports of autism, yet the disease is not contagious. Since it is not catching, there must be other forces at work that somehow create or pass on the autistic symptoms. DNA reports show that deviations in the genetic code due to ancient inbreeding can follow a human line for generations. Studies show that inbreeding was widespread until a few hundred years ago and is continued today, but to a lesser degree. After millions of inbreeds, the world population has become so numerous that it is globally sharing ancestors which is producing genetic abnormalities. In other words, autism may be the result of the widespread inbreeding of ancient generations. We are all touched by autism to one degree or another through common ancestors. The DNA of modern Homo sapiens of European and/or Asian descent will show 1 to 4% Neanderthal from 40,000 years ago. With that in mind, todays outbreaks may be due to descendants of ancient inbreeding times surfacing at the same time. Key words: Autism, genetics, inbreeding, DNA, ancient generations, consanguineous marriage, incest INTRODUCTION The world might be smaller than you think chances of inheriting a bad DNA fit which results in a birth defect. -
Cousin Marriage & Inbreeding Depression
Evidence of Inbreeding Depression: Saudi Arabia Saudi Intermarriages Have Genetic Costs [Important note from Raymond Hames (your instructor). Cousin marriage in the United States is not as risky compared to cousin marriage in Saudi Arabia and elsewhere where there is a long history of repeated inter-marriage between close kin. Ordinary cousins without a history previous intermarriage are related to one another by 0.0125. However, in societies with a long history of intermarriage, relatedness is much higher. For US marriages a study published in The Journal of Genetic Counseling in 2002 said that the risk of serious genetic defects like spina bifida and cystic fibrosis in the children of first cousins indeed exists but that it is rather small, 1.7 to 2.8 percentage points higher than for children of unrelated parents, who face a 3 to 4 percent risk — or about the equivalent of that in children of women giving birth in their early 40s. The study also said the risk of mortality for children of first cousins was 4.4 percentage points higher.] By Howard Schneider Washington Post Foreign Service Sunday, January 16, 2000; Page A01 RIYADH, Saudi Arabia-In the centuries that this country's tribes have scratched a life from the Arabian Peninsula, the rule of thumb for choosing a marriage partner has been simple: Keep it in the family, a cousin if possible, or at least a tribal kin who could help conserve resources and contribute to the clan's support and defense. But just as that method of matchmaking served a purpose over the generations, providing insurance against a social or financial mismatch, so has it exacted a cost--the spread of genetic disease. -
Malaria and Sickle Cell Anemia
Malaria and Sickle Cell Anemia: Putting an Old Hypothesis to the Test Scientists have known for years that having sickled red blood cells can protect humans against malaria because sickled red blood cells are harder for the malaria-causing parasite to infect. Sickle cell trait, the phenotype associated with having one sickle cell allele and one normal allele (genotype H bAS) , is an example of heterozygote advantage because i n an environment where malaria is common, being homozygous in either direction—either having all sickled red blood cells (H bSS) or having all no sickled red blood cells (H bAA) —is a disadvantage. It is therefore u nsurprising that scientists have observed a high rate of sickle cell anemia among populations living in areas where malaria is very common. (After all, what happens when two carriers for sickle cell anemia have children together?) What might be surprising, however, is that although scientists have understood the importance of the link between malaria and sickle cell anemia for many years, it wasn’t until 2015 that a group of researchers set out to gather firsthand data. Before 2015, most of the data that scientists had used was taken from historical records of malaria prevalence. To get a more up-to-date picture, a group of scientists from the Research Institute for Development (IRD) in France undertook an epidemiological study t o observe the patterns of health and disease with relation to sickle cell anemia and malaria in the Republic of Gabon (see F igure 1 ). E pidemiology is a branch of medicine that studies the factors influencing health and disease in populations. -
Heterozygote Advantage Can Explain the Extraordinary Diversity of Immune Genes
bioRxiv preprint doi: https://doi.org/10.1101/347344; this version posted May 8, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY 4.0 International license. Manuscript SUBMITTED TO eLife HeterOZYGOTE ADVANTAGE CAN EXPLAIN THE EXTRAORDINARY DIVERSITY OF IMMUNE GENES Mattias Siljestam1* AND Claus RuefflER1 *For CORRespondence: [email protected] (MS) 1Department OF Ecology AND Genetics, Animal Ecology, Uppsala University, Norbyvägen 18D, 752 36 Uppsala, Sweden AbstrACT The MAJORITY OF HIGHLY POLYMORPHIC GENES ARE RELATED TO IMMUNE FUNCTIONS AND WITH OVER 100 ALLELES WITHIN A POPULATION GENES OF THE MAJOR HISTOCOMPATIBILITY COMPLEX (MHC) ARE THE MOST POLYMORPHIC LOCI IN VERTEBRates. HoW SUCH EXTRAORDINARY POLYMORPHISM AROSE AND IS MAINTAINED IS CONTROversial. One POSSIBILITY IS HETEROZYGOTE ADVANTAGE WHICH CAN IN PRINCIPLE MAINTAIN ANY NUMBER OF ALLELES BUT BIOLOGICALLY EXPLICIT MODELS BASED ON THIS MECHANISM HAVE SO FAR FAILED TO RELIABLY PREDICT THE COEXISTENCE OF SIGNIfiCANTLY MORE THAN TEN alleles. WE PRESENT AN eco-eVOLUTIONARY MODEL SHOWING THAT EVOLUTION CAN IN A self-orGANISING PROCESS RESULT IN THE EMERGENCE OF MORE THAN 100 ALLELES MAINTAINED BY HETEROZYGOTE advantage. Thus, OUR MODEL SHOWS THAT HETEROZYGOTE ADVANTAGE IS A MUCH MORE POTENT FORCE IN EXPLAINING THE EXTRAORDINARY POLYMORPHISM FOUND AT MHC LOCI THAN CURRENTLY Recognised. Our MODEL APPLIES MORE GENERALLY AND CAN EXPLAIN POLYMORPHISM AT ANY GENE INVOLVED IN MULTIPLE FUNCTIONS IMPORTANT FOR survival. INTRODUCTION HeterOZYGOTE ADVANTAGE IS A WELL ESTABLISHED EXPLANATION FOR SINGLE LOCUS POLYMORPHISM WITH THE SICKLE CELL LOCUS AS A CLASSICAL TEXT BOOK EXAMPLE (Allison, 1954). -
Tay Sachs Disease Testing
Autosomal recessive mutations Genetic diseases & testing The story of three genetic diseases Phenylketonuria Reading: Chapter 12; and pp 201-202 Sickle-Cell Anemia Tay-Sachs Disease Phenylketonuria (PKU), Sickle-Cell Anemia and Tay-Sachs Disease are autosomal Frequencies of Sickle-Cell Anemia and Tay- recessive diseases. Sachs Disease alleles in different populations. carrier Disease is expressed in Sickle-Cell Anemia matings between carriers 10-40% of the population in regions of equatorial (heterozygotes). Africa are carriers <1% of South Africans are carriers Most affected individuals have unaffected parents. Tay-Sachs Increased frequency with 1/25 American Ashkenazi Jews are carriers inbreeding. 1/300 in the general population are carriers Why are the frequencies of some Hemoglobin disease alleles so high? Major protein in red blood cells. Hemoglobin is made of four Explanation #1 polypeptide chains--2 alpha and Heterozygote advantage 2 beta chains--and four heme- iron complexes. These complexes bind O2. Explanation #2 Founder effect Hemoglobin releases CO2 and binds O2 when CO2 concentrations are low. i.e., in the lungs. Hb binds CO2 and releases O2 when CO2 concentrations high. A single amino acid change in the beta peptide results in sickle cell anemia Why is the carrier frequency so high? Carriers have an advantage in malaria-infested areas Genotype disease malaria HbA/HbA normal susceptible HbA/HbS normal resistant Tay Sachs The Founder Effect Progressive disease with an onset in infancy of developmental retardation, followed by paralysis, dementia and blindness. Death occurs in the second or third year of life. Tay-Sachs disease is caused by mutation in the hexosaminidase A gene, which removes fatty substances called gangliosides. -
Pleiotropic Models of Quantitative Variation
Copyright 0 1990 by the Genetics Society of America Pleiotropic Modelsof Quantitative Variation N. H. Barton Department of Genetics and Biometry, University College London, London hW12HE, England Manuscript received May 23, 1989 Accepted for publication November 2 1, 1989 ABSTRACT It is widely held that each gene typically affects many characters, and thateach character is affected by many genes. Moreover, strong stabilizing selection cannot act on an indefinitely large number of independent traits. This makes it likely that heritable variation in any one trait is maintained as a side effect of polymorphisms which have nothing to do with selection on that trait. This paper examines the idea that variation is maintained as the pleiotropic side effect of either deleterious mutation, or balancing selection. If mutation is responsible, it must produce alleles which are only mildly deleterious (s = lo-'), but nevertheless have significant effects on the trait. Balancing selection can readily maintain high heritabilities; however, selection must be spread over many weakly selected polymor- phisms if large responses to artificial selection are to be possible. In both classes of pleiotropic model, extreme phenotypes are less fit, giving the appearance of stabilizing selection on the trait.However, it is shown that this effect isweak (of the same order as the selection on each gene): the strong stabilizing selection which is often observed is likely to be caused by correlations with a limited number of directly selected traits. Possible experiments for distinguishing the alternatives are discussed. HE main application of quantitative genetics to Following ROBERTSON(1967), we can contrast two T artificial and natural populations has been to kinds of explanation for these apparently contradic- use the pattern of genetic variances and covariances tory observations. -
Genetic and Epigenetic Regulation of Phenotypic Variation in Invasive Plants – Linking Research Trends Towards a Unified Fr
A peer-reviewed open-access journal NeoBiota 49: 77–103Genetic (2019) and epigenetic regulation of phenotypic variation in invasive plants... 77 doi: 10.3897/neobiota.49.33723 REVIEW ARTICLE NeoBiota http://neobiota.pensoft.net Advancing research on alien species and biological invasions Genetic and epigenetic regulation of phenotypic variation in invasive plants – linking research trends towards a unified framework Achyut Kumar Banerjee1, Wuxia Guo1, Yelin Huang1 1 State Key Laboratory of Biocontrol and Guangdong Provincial Key Laboratory of Plant Resources, School of Life Sciences, Sun Yat-sen University 135 Xingangxi Road, Guangzhou, Guangdong, 510275, China Corresponding author: Yelin Huang ([email protected]) Academic editor: Harald Auge | Received 7 February 2019 | Accepted 26 July 2019 | Published 19 August 2019 Citation: Banerjee AK, Guo W, Huang Y (2019) Genetic and epigenetic regulation of phenotypic variation in invasive plants – linking research trends towards a unified framework. NeoBiota 49: 77–103. https://doi.org/10.3897/ neobiota.49.33723 Abstract Phenotypic variation in the introduced range of an invasive species can be modified by genetic variation, environmental conditions and their interaction, as well as stochastic events like genetic drift. Recent stud- ies found that epigenetic modifications may also contribute to phenotypic variation being independent of genetic changes. Despite gaining profound ecological insights from empirical studies, understanding the relative contributions of these molecular mechanisms behind phenotypic variation has received little attention for invasive plant species in particular. This review therefore aimed at summarizing and synthesizing information on the genetic and epige- netic basis of phenotypic variation of alien invasive plants in the introduced range and their evolutionary consequences. -
Inbreeding Depression in Two Populations of Arenaria Uni¯Ora (Caryophyllaceae) with Contrasting Mating Systems
Heredity 86 (2001) 184±194 Received 16 November 1999, accepted 17 October 2000 Inbreeding depression in two populations of Arenaria uni¯ora (Caryophyllaceae) with contrasting mating systems LILA FISHMAN Department of Ecology and Evolutionary Biology, Princeton University, Princeton, NJ 08544 U.S.A. I used parallel family-structured crossing designs to investigate the relative performance of self and outcross progeny in sel®ng and predominantly outcrossing populations of the annual plant Arenaria uni¯ora. The selfer population experienced much lower inbreeding depression (d 0.05 0.02 SE) than the outcrossers (d 0.19 0.02 SE). The negative association between genetic load and sel®ng rate suggests that purgable partially recessive alleles are the primary source of inbreeding depression, as does its late expression in both populations. Inbreeding depression in the selfer population, which naturally consists of highly inbred lines, was used to calculate the mean dominance (h 0.33) and incidence rate (U 0.30) of deleterious mutations. In the outcrosser population, signi®cant variation among individuals in the expression of inbreeding depression may re¯ect lineage-speci®c dierences in inbreeding history or, more probably, random variation in mutational load. The low (0.5) inbreeding depression of outcrossers suggests that the maintenance of a mixed mating system in some A. uni¯ora populations and the evolution of nearly cleistogamous self-pollination in others may re¯ect local pollinator-mediated selection for sel®ng rather than the constant 3:2 genetic advantage invoked by many models. Keywords: Arenaria uni¯ora, genetic load, inbreeding depression, mating system, sel®ng. -
Inbreeding Effects in Wild Populations
230 Review TRENDS in Ecology & Evolution Vol.17 No.5 May 2002 43 Putz, F.E. (1984) How trees avoid and shed lianas. estimate of total aboveground biomass for an neotropical forest of French Guiana: spatial and Biotropica 16, 19–23 eastern Amazonian forest. J. Trop. Ecol. temporal variability. J. Trop. Ecol. 17, 79–96 44 Appanah, S. and Putz, F.E. (1984) Climber 16, 327–335 52 Pinard, M.A. and Putz, F.E. (1996) Retaining abundance in virgin dipterocarp forest and the 48 Fichtner, K. and Schulze, E.D. (1990) Xylem water forest biomass by reducing logging damage. effect of pre-felling climber cutting on logging flow in tropical vines as measured by a steady Biotropica 28, 278–295 damage. Malay. For. 47, 335–342 state heating method. Oecologia 82, 350–361 53 Chai, F.Y.C. (1997) Above-ground biomass 45 Laurance, W.F. et al. (1997) Biomass collapse in 49 Restom, T.G. and Nepstad, D.C. (2001) estimation of a secondary forest in Sarawak. Amazonian forest fragments. Science Contribution of vines to the evapotranspiration of J. Trop. For. Sci. 9, 359–368 278, 1117–1118 a secondary forest in eastern Amazonia. Plant 54 Putz, F.E. (1983) Liana biomass and leaf area of a 46 Meinzer, F.C. et al. (1999) Partitioning of soil Soil 236, 155–163 ‘terra firme’ forest in the Rio Negro basin, water among canopy trees in a seasonally dry 50 Putz, F.E. and Windsor, D.M. (1987) Liana Venezuela. Biotropica 15, 185–189 tropical forest. Oecologia 121, 293–301 phenology on Barro Colorado Island, Panama. -
In Drosophila Pseudoobscura*
A POPULATION CAGE TEST FOR HETEROSIS IN DROSOPHILA PSEUDOOBSCURA* JOHN A. SVED AND FRANCISCO J. AYALA The Rockefeller University, New York, N.Y. 10021 Received August 21, 1969 HE existence of high levels of heterozygosity in some natural populations, perhaps as high as 10-200/0 of the genome per individual, seems by now a well-established phenomenon (see review by SPIESS1968). Given the rather small suspected size of these populations, some explanation of how this variability is maintained seems necessary. In addition, as emphasized by LEWONTINand HUBBY(1 966), such explanation should take into account the high degree of similarity with respect to particular polymorphisms amongst populations, sug- gesting the likelihood that the polymorphisms are maintained by natural selection (see also PRAKASH,LEWONTIN and HUBBY1969). Heterozygote advantage, or heterosis, is one of the principal selective mecha- nisms at present under consideration. In the present article we will describe an experiment which is designed to investigate the adequacy of this explanation. Tests for heterosis: KING ( 1967) and SVED,REED and BODMER(1967) have recently emphasized the rather obvious point that an efficient method for testing whether the homozygote is usually at a disadvantage to the heterozygote is to compare the fitness of ordinary outbred individuals with that of individuals hav- ing a greater than normal proportion of homozygous loci, produced through some form of inbreeding. The results of many such tests are of course available, and it was argued that these results were compatible with only a limited amount of heterozygote advantage. A point which must be noted here is that tests such as the above give infonna- tion only on the overall homozygous disadvantage. -
Heterozygote Advantage for Fecundity Neil J
Heterozygote Advantage for Fecundity Neil J. Gemmell1*, Jon Slate2 1 School of Biological Sciences, University of Canterbury, Christchurch, New Zealand, 2 Department of Animal and Plant Sciences, University of Sheffield, Sheffield, United Kingdom Heterozygote advantage, or overdominance, remains a popular and persuasive explanation for the maintenance of genetic variation in natural populations in the face of selection. However, despite being first proposed more than 80 years ago, there remain few examples that fit the criteria for heterozygote advantage, all of which are associated with disease resistance and are maintained only in the presence of disease or other gene-by-environment interaction. Here we report five new examples of heterozygote advantage, based around polymorphisms in the BMP15 and GDF9 genes that affect female fecundity in domesticated sheep and are not reliant on disease for their maintenance. Five separate mutations in these members of the transforming growth factor b (TGFb) superfamily give phenotypes with fitness differentials characteristic of heterozygous advantage. In each case, one copy of the mutant allele increases ovulation rate, and ultimately litter size per ewe lambing, relative to the wildtype. However, homozygous ewes inheriting mutant alleles from both parents have impaired oocyte development and maturation, which results in small undeveloped ovaries and infertility. Using data collected over many years on ovulation rates, litter size, and lambing rates, we have calculated the equilibrium solution for each of these polymorphisms using standard population genetic theory. The predicted equilibrium frequencies obtained for these mutant alleles range from 0.11 to 0.23, which are amongst the highest yet reported for a polymorphism maintained by heterozygote advantage. -
The Eff'ects of Inbreeding at Loci with Heterozygote Advantage
THE EFF'ECTS OF INBREEDING AT LOCI WITH HETEROZYGOTE ADVANTAGE W. G. HILL AND ALAN ROBERTSON' Institute of Animal Genetics, Edinburgh 9 Received May 20, 1968 INCE the early studies of FISHERand WRIGHTthe theory of selection within populations of finite size has received much attention. KIMURA(1964) has reviewed the part of the theory that is based on continuous models in which it is usually assumed that individuals mate at random within small closed sub-popula- tions or lines. In such a situation we are concerned with the distribution of the frequency of individual genes over many replicate lines, or, equivalently, the distribution of the frequency of identical genes within the same line. In this report we study selection favouring heterozygous individuals with random mating within lines and no selection or crossing occurring between lines. The model for inbreeding which we discuss must be distinguished from an alternative situation, perhaps more common in plants, in which inbreeding occurs within an infinitely large population as a result of non-random mating, for example by selfing or mixed selfing and outcrossing. In the latter type of model, selection also may occur between sublines and recurrent mutation is not required for equilibria of gene frequency to occur without fixation, whereas it is in our model. These equilibrium situations have been analysed recently in some detail by ALLARD and co-workers. Many of their results for single loci are reviewed by JAINand WORKMAN(1967) and analysis of a two locus model is given by JAIN and ALLARD(1966). The effect of selection for heterozygous individuals in small lines when there is no between-line selection has been studied by REEVE(1955) using transition probability matrices for mating types in lines of only a few individuals, and by ROBERTSON(1962).