Relative abundance: Averaged within Phylum Relative abundance: Averaged within Family

0.75

Tax

[F] Methanobacteriaceae [F] unknown

[F] Acidobacteriaceae [F] Anaplasmataceae 0.4 [F] Bifidobacteriaceae [F] Alcaligenaceae [F] Atopobiaceae [F] Sutterellaceae

[F] Coriobacteriaceae [F] Desulfovibrionaceae

[F] Eggerthellaceae [F] Aeromonadaceae

[F] Bacteroidaceae [F] Succinivibrionaceae

[F] Porphyromonadaceae [F] Enterobacteriaceae

[F] Prevotellaceae [F] Moraxellaceae Tax [F] Rikenellaceae [F] Xanthomonadaceae 0.50 [F] Tannerellaceae [F] Brachyspiraceae [P] Euryarchaeota [P] Spirochaetes [F] unknown [F] Spirochaetaceae

[P] Acidobacteria [P] Tenericutes [F] Flavobacteriaceae [F] Mycoplasmataceae

[P] Actinobacteria [P] unknown [F] Chlamydiaceae [F] unknown

[P] Bacteroidetes [P] Verrucomicrobia [F] Fibrobacteraceae [F] Akkermansiaceae

[P] Candidatus Saccharibacteria [P] Apicomplexa [F] Bacillaceae [F] Plasmodiidae

[P] Chlamydiae [P] Ascomycota [F] Paenibacillaceae [F] Babesiidae

[P] Fibrobacteres [P] Basidiomycota [F] Carnobacteriaceae [F] Neocallimastigaceae

[P] Firmicutes [P] Chytridiomycota [F] Enterococcaceae [F] Stentoridae

[P] Lentisphaerae [P] Mucoromycota [F] Lactobacillaceae [F] Ophryoscolecidae

[P] Planctomycetes [P] unknown [F] Streptococcaceae [F] Tetrahymenidae

[P] Proteobacteria [P] unknown [F] Clostridiaceae [F] unknown

Relative abundance (%) abundance Relative (%) abundance Relative [F] Clostridiales Family XIII. Incertae Sedis [F] Parameciidae

0.2 [F] Eubacteriaceae [F] Pseudocohnilembidae

[F] Lachnospiraceae [F] Oxytrichidae

[F] Oscillospiraceae [F] Tritrichomonadidae

[F] Peptostreptococcaceae [F] Entamoebidae 0.25 [F] Ruminococcaceae [F] Myoviridae [F] unknown [F] Podoviridae

[F] Erysipelotrichaceae [F] Siphoviridae

[F] Acidaminococcaceae [F] Poxviridae

[F] Selenomonadaceae [F] unknown

[F] Veillonellaceae

0.00 0.0 Illumina Minion Illumina Minion Platform Platform Relative abundance: Averaged within Genus Relative abundance: Averaged within Species

0.15 0.4 Tax Tax [G] Methanobrevibacter [G] unknown [S] Methanobrevibacter millerae [S] Bacillus obstructivus [S] Coprobacillus sp. CAG:826 [G] Terriglobus [G] Acidaminococcus [S] Terriglobus sp. TAA 43 [S] Bacillus sp. VT−16−64 [S] Solobacterium moorei [G] Bifidobacterium [G] Phascolarctobacterium [S] Bacteroides fragilis [S] Enterococcus faecalis [S] Erysipelotrichaceae bacterium NK3D112 [G] Olsenella [G] Succiniclasticum [S] Bacteroides sp. 43_108 [S] Sharpea azabuensis [S] Succiniclasticum ruminis [G] Bacteroides [G] Anaerovibrio [S] Prevotella albensis [S] Streptococcus pneumoniae [S] Schwartzia succinivorans [G] Porphyromonas [G] Schwartzia [S] Prevotella baroniae [S] Clostridium sp. CAG:417 [S] Selenomonas ruminantium [G] Paraprevotella [G] Selenomonas [S] Prevotella bergensis [S] Clostridium sp. CAG:433 [S] Dialister succinatiphilus [G] Prevotella [G] Dialister [S] Prevotella brevis [S] Clostridium sp. CAG:793 [S] Firmicutes bacterium CAG:103 [G] unknown [G] Megasphaera [S] Prevotella bryantii [S] uncultured Clostridium sp. [S] Firmicutes bacterium CAG:240 [G] Alistipes [G] unknown [S] Prevotella buccae [S] Sarcina sp. DSM 11001 [S] Firmicutes bacterium CAG:555 0.3 [G] Parabacteroides [G] Anaplasma [S] Prevotella copri [S] [Eubacterium] cellulosolvens [S] Firmicutes bacterium CAG:582 [G] unknown [G] Pelistega [S] Prevotella disiens [S] Eubacterium ruminantium [S] Firmicutes bacterium CAG:791 [G] Chlamydia [G] Sutterella [S] Prevotella histicola [S] Eubacterium sp. AB3007 [S] Anaplasma phagocytophilum [G] Fibrobacter [G] Desulfovibrio 0.10 [S] Prevotella maculosa [S] Eubacterium sp. CAG:202 [S] Pelistega indica [G] Bacillus [G] Aeromonas [S] Prevotella multisaccharivorax [S] Eubacterium sp. CAG:581 [S] Sutterella wadsworthensis [G] Oceanobacillus [G] Succinatimonas [S] Prevotella oralis [S] Eubacterium sp. CAG:603 [S] Succinatimonas sp. CAG:777 [G] Paenibacillus [G] Succinimonas [S] Prevotella oryzae [S] Eubacterium uniforme [S] Succinimonas amylolytica [G] Carnobacterium [G] Succinivibrio [S] Prevotella paludivivens [S] Butyrivibrio fibrisolvens [S] Succinivibrio dextrinosolvens [G] Enterococcus [G] Acinetobacter [S] Prevotella ruminicola [S] Butyrivibrio sp. AE2032 [S] Stenotrophomonas maltophilia [G] Lactobacillus [G] Stenotrophomonas [S] Prevotella sp. AGR2160 [S] Lachnobacterium bovis [S] Treponema bryantii [G] Sharpea [G] Xanthomonas [S] Prevotella sp. BP1−145 [S] Lachnospira multipara [S] Mycoplasma sp. CAG:877 [G] Streptococcus [G] Brachyspira [S] Prevotella sp. BP1−148 [S] Oribacterium sp. oral taxon 078 [S] bacterium F082 [G] Clostridium [G] Treponema [S] Prevotella sp. CAG:1092 [S] Lachnospiraceae bacterium AB2028 [S] bacterium F083 0.2 [G] Sarcina [G] Mycoplasma [S] Prevotella sp. CAG:279 [S] Lachnospiraceae bacterium AC2029 [S] bacterium P201 [G] Eubacterium [G] unknown [S] Prevotella sp. CAG:732 [S] Lachnospiraceae bacterium AC2031 [S] bacterium P3 [G] Blautia [G] Akkermansia [S] Prevotella sp. CAG:924 [S] Lachnospiraceae bacterium AC3007 [S] candidate division SR1 bacterium RAAC1_SR1_1 [G] Butyrivibrio [G] Plasmodium [S] Prevotella sp. FD3004 [S] Lachnospiraceae bacterium AD3010 [S] uncultured bacterium Relative abundance (%) abundance Relative [G] Coprococcus [G] Babesia (%) abundance Relative [S] Prevotella sp. MA2016 [S] Lachnospiraceae bacterium FE2018 [S] Babesia bigemina [G] Dorea [G] Anaeromyces [S] Prevotella sp. ne3005 [S] Lachnospiraceae bacterium NC2004 [S] Anaeromyces robustus [G] Lachnobacterium [G] Neocallimastix [S] Prevotella sp. P6B1 [S] Lachnospiraceae bacterium NK4A179 [S] Neocallimastix californiae [G] Lachnoclostridium [G] Stentor [S] Prevotella sp. P6B4 [S] Lachnospiraceae bacterium P6B14 [S] Stentor coeruleus [G] Lachnospira [G] Entodinium 0.05 [S] Prevotella sp. RM4 [S] Lachnospiraceae bacterium YSB2008 [S] Entodinium caudatum [G] Oribacterium [G] Tetrahymena [S] Prevotella sp. tc2−28 [S] Ruminococcus albus [S] Tetrahymena thermophila [G] Pseudobutyrivibrio [G] Ichthyophthirius [S] Prevotella sp. tf2−5 [S] Ruminococcus bromii [S] Ichthyophthirius multifiliis [G] Roseburia [G] Paramecium [S] Prevotellaceae bacterium HUN156 [S] Ruminococcus flavefaciens [S] Paramecium tetraurelia [G] unknown [G] Pseudocohnilembus [S] Alistipes sp. CAG:435 [S] Ruminococcus sp. FC2018 [S] Pseudocohnilembus persalinus 0.1 [G] Oscillibacter [G] Oxytricha [S] Alistipes sp. CAG:514 [S] Ruminococcus sp. HUN007 [S] Oxytricha trifallax [G] Faecalibacterium [G] Stylonychia [S] Bacteroidales bacterium WCE2004 [S] uncultured Ruminococcus sp. [S] Stylonychia lemnae [G] Ruminococcus [G] Tritrichomonas [S] Bacteroidales bacterium WCE2008 [S] Ruminococcaceae bacterium AB4001 [S] Tritrichomonas foetus [G] unknown [G] Entamoeba [S] Chlamydia trachomatis [S] Ruminococcaceae bacterium P7 [S] Orf virus [G] unknown [G] Parapoxvirus [S] Fibrobacter sp. UWOV1 [S] Clostridiales bacterium NK3B98 [S] uncultured crAssphage [G] Coprobacillus [G] unknown [S] Fibrobacter succinogenes [S] Clostridiales bacterium [G] Solobacterium

0.0 0.00 Illumina Minion Illumina Minion Platform Platform