Biomimetic Synthesis of Hitorins a and B Via an Intermolecular Alkoxy Radical-Olefin Coupling Cascade Xiaohuan Li, Tianran Zhai, Ping He, Zheng Wei, and Zhang Wang*
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Bottom-Up Synthesis and Sensor Applications of Biomimetic Nanostructures
materials Review Bottom-Up Synthesis and Sensor Applications of Biomimetic Nanostructures Li Wang 1,*, Yujing Sun 2, Zhuang Li 2, Aiguo Wu 3 and Gang Wei 4,* Received: 25 November 2015; Accepted: 7 January 2016; Published: 18 January 2016 Academic Editor: Erik Reimhult 1 College of Chemistry, Jilin Normal University, Haifeng Street 1301, Siping 136000, China 2 State Key Laboratory of Electroanalytical Chemistry, Changchun Institute of Applied Chemistry, Chinese Academy of Sciences, Renmin Street 5625, Changchun 130022, China; [email protected] (Y.S.); [email protected] (Z.L.) 3 Key Laboratory of Magnetic Materials and Devices & Division of Functional Materials and Nanodevices, Ningbo Institute of Material Technology and Engineering, Chinese Academy Sciences, Ningbo 315201, China; [email protected] 4 Faculty of Production Engineering, University of Bremen, Am Fallturm 1, D-28359 Bremen, Germany * Correspondence: [email protected] (L.W.); [email protected] (G.W.); Tel.: +86-139-4441-1011 (L.W.); +49-421-2186-4581 (G.W.) Abstract: The combination of nanotechnology, biology, and bioengineering greatly improved the developments of nanomaterials with unique functions and properties. Biomolecules as the nanoscale building blocks play very important roles for the final formation of functional nanostructures. Many kinds of novel nanostructures have been created by using the bioinspired self-assembly and subsequent binding with various nanoparticles. In this review, we summarized the studies on the fabrications and sensor applications of biomimetic nanostructures. The strategies for creating different bottom-up nanostructures by using biomolecules like DNA, protein, peptide, and virus, as well as microorganisms like bacteria and plant leaf are introduced. -
Enantioselective Total Synthesis of (-)-Deoxoapodine
Enantioselective total synthesis of (-)-deoxoapodine The MIT Faculty has made this article openly available. Please share how this access benefits you. Your story matters. Citation Kang, Taek, et al., "Enantioselective total synthesis of (-)- deoxoapodine." Angewandte Chemie International Edition 56, 44 (Sept. 2017): p. 13857-60 doi 10.1002/anie.201708088 ©2017 Author(s) As Published 10.1002/anie.201708088 Publisher Wiley Version Author's final manuscript Citable link https://hdl.handle.net/1721.1/125957 Terms of Use Creative Commons Attribution-Noncommercial-Share Alike Detailed Terms http://creativecommons.org/licenses/by-nc-sa/4.0/ HHS Public Access Author manuscript Author ManuscriptAuthor Manuscript Author Angew Manuscript Author Chem Int Ed Engl Manuscript Author . Author manuscript; available in PMC 2018 October 23. Published in final edited form as: Angew Chem Int Ed Engl. 2017 October 23; 56(44): 13857–13860. doi:10.1002/anie.201708088. Enantioselective Total Synthesis of (−)-Deoxoapodine Dr. Taek Kang§,a, Dr. Kolby L. White§,a, Tyler J. Mannb, Prof. Dr. Amir H. Hoveydab, and Prof. Dr. Mohammad Movassaghia aDepartment of Chemistry, Massachusetts Institute of Technology Cambridge, MA 02139 (USA) bDepartment of Chemistry, Merkert Chemistry Center, Boston College, Chestnut Hill, MA 02467 (USA) Abstract The first enantioselective total synthesis of (−)-deoxoapodine is described. Our synthesis of this hexacyclic aspidosperma alkaloid includes an efficient molybdenum-catalyzed enantioselective ring-closing metathesis reaction for desymmetrization of an advanced intermediate that introduces the C5-quaternary stereocenter. After C21-oxygenation, the pentacyclic core was accessed via an electrophilic C19-amide activation and transannular spirocyclization. A biogenetically inspired dehydrative C6-etherification reaction proved highly effective to secure the F-ring and the fourth contiguous stereocenter of (−)-deoxoapodine with complete stereochemical control. -
Of Grignard Reagent Formation. the Surface Nature of the Reaction
286 Ace. Chem. Res. 1990,23, 286-293 Mechanism of Grignard Reagent Formation. The Surface Nature of the Reaction H. M. WALBORSKY Dittmer Laboratory of Chemistry, Florida State University, Tallahassee, Florida 32306 Received February 23, 1990 (Revised Manuscript Received May 7, 1990) The reaction of organic halides (Br, C1, I) with mag- Scheme I nesium metal to yield what is referred to today as a Kharasch-Reinmuth Mechanism for Grignard Reagent Grignard reagent has been known since the turn of the Formation century,' The name derives from its discoverer, Nobel (1)(Mg0)AMg*)2y + RX 4 [(M~'~(MQ')~~-,('MQX)+ R.] + laureate Victor Grignard. How this reagent is formed, (Mgo)x-2(MQ')2~MgX)(MgR) that is, how a magnesium atom is inserted into a car- bon-halogen bond, is the subject of this Account. ('4 (Ms0),-*(M9')2~MgX)(MgR) + + (Mg0)x-dMg*)2y+2 + 2RMgX RX + Mg - RMgX Kharasch and Reinmuth,, persuaded by the work of late under the same conditions gave Itl = 6.2 X s-l. Another system that meets the above criterion is the Gomberg and Bachmad as well as by product analyses of many Grignard formation reactions that existed in vinyl system. The lack of reactivity of vinyl halides toward SN1reactions is well-known and is exemplified the literature prior to 1954,speculated that the reaction involved radicals and that the radical reactions might by the low solvolysis rate of 2-propenyl triflate5 in 80% involve "surface adherent radicals, at least in part". The ethanol at 25 OC, kl being 9.8 X s-l. -
Biomimetic Total Synthesis of Natural Products
Biomimetic Total Synthesis of Natural Products Thesis submitted for the degree of Doctor of Philosophy Hiu Chun Lam Bsc (Hons.) Chemistry Department of Chemistry University of Adelaide Aug, 2017 To my family II Declaration I certify that this work contains no material which has been accepted for the award of any other degree or diploma in my name, in any university or other tertiary institution and, to the best of my knowledge and belief, contains no material previously published or written by another person, except where due reference has been made in the text. In addition, I certify that no part of this work will, in the future, be used in a submission in my name, for any other degree or diploma in any university or other tertiary institution without the prior approval of the University of Adelaide and where applicable, any partner institution responsible for the joint-award of this degree. I give consent to this copy of my thesis, when deposited in the University Library, being made available for loan and photocopying, subject to the provisions of the Copyright Act 1968. I also give permission for the digital version of my thesis to be made available on the web, via the University’s digital research repository, the Library Search and also through web search engines, unless permission has been granted by the University to restrict access for a period of time. I acknowledge the support I have received for my research through the provision of an Australian Government Research Training Program Scholarship Hiu Chun Lam Date III Acknowledgements First, I would like to thank my supervisor Dr. -
A Dictionary of Chinese Characters: Accessed by Phonetics
A dictionary of Chinese characters ‘The whole thrust of the work is that it is more helpful to learners of Chinese characters to see them in terms of sound, than in visual terms. It is a radical, provocative and constructive idea.’ Dr Valerie Pellatt, University of Newcastle. By arranging frequently used characters under the phonetic element they have in common, rather than only under their radical, the Dictionary encourages the student to link characters according to their phonetic. The system of cross refer- encing then allows the student to find easily all the characters in the Dictionary which have the same phonetic element, thus helping to fix in the memory the link between a character and its sound and meaning. More controversially, the book aims to alleviate the confusion that similar looking characters can cause by printing them alongside each other. All characters are given in both their traditional and simplified forms. Appendix A clarifies the choice of characters listed while Appendix B provides a list of the radicals with detailed comments on usage. The Dictionary has a full pinyin and radical index. This innovative resource will be an excellent study-aid for students with a basic grasp of Chinese, whether they are studying with a teacher or learning on their own. Dr Stewart Paton was Head of the Department of Languages at Heriot-Watt University, Edinburgh, from 1976 to 1981. A dictionary of Chinese characters Accessed by phonetics Stewart Paton First published 2008 by Routledge 2 Park Square, Milton Park, Abingdon, OX14 4RN Simultaneously published in the USA and Canada by Routledge 270 Madison Ave, New York, NY 10016 Routledge is an imprint of the Taylor & Francis Group, an informa business This edition published in the Taylor & Francis e-Library, 2008. -
Posttranslational Chemical Installation of Azoles Into Translated Peptides ✉ ✉ Haruka Tsutsumi1,2, Tomohiro Kuroda1,2, Hiroyuki Kimura 1, Yuki Goto 1 & Hiroaki Suga 1
ARTICLE https://doi.org/10.1038/s41467-021-20992-0 OPEN Posttranslational chemical installation of azoles into translated peptides ✉ ✉ Haruka Tsutsumi1,2, Tomohiro Kuroda1,2, Hiroyuki Kimura 1, Yuki Goto 1 & Hiroaki Suga 1 Azoles are five-membered heterocycles often found in the backbones of peptidic natural products and synthetic peptidomimetics. Here, we report a method of ribosomal synthesis of azole-containing peptides involving specific ribosomal incorporation of a bromovinylglycine 1234567890():,; derivative into the nascent peptide chain and its chemoselective conversion to a unique azole structure. The chemoselective conversion was achieved by posttranslational dehydro- bromination of the bromovinyl group and isomerization in aqueous media under fairly mild conditions. This method enables us to install exotic azole groups, oxazole and thiazole, at designated positions in the peptide chain with both linear and macrocyclic scaffolds and thereby expand the repertoire of building blocks in the mRNA-templated synthesis of designer peptides. 1 Department of Chemistry, Graduate School of Science, The University of Tokyo, Bunkyo, Tokyo, Japan. 2These authors contributed equally: Haruka Tsutsumi, ✉ Tomohiro Kuroda. email: [email protected]; [email protected] NATURE COMMUNICATIONS | (2021) 12:696 | https://doi.org/10.1038/s41467-021-20992-0 | www.nature.com/naturecommunications 1 ARTICLE NATURE COMMUNICATIONS | https://doi.org/10.1038/s41467-021-20992-0 zoles, such as oxazoles and thiazoles, are five-membered heterocycles often found in the backbone of peptidic UCAG DNA template U A 1,2 Phe Tyr Cys C natural products . Such azole-containing natural pep- U Ser O Leu A tides exhibit a variety of bioactivities, including antitumor, anti- Trp G – His U H2N 3 9 C Leu Pro Arg C OH fungal, antibiotic, and antiviral activities . -
The Two Faces of the Guanyl Radical: Molecular Context and Behavior
molecules Review The Two Faces of the Guanyl Radical: Molecular Context and Behavior Chryssostomos Chatgilialoglu 1,2 1 ISOF, Consiglio Nazionale delle Ricerche, 40129 Bologna, Italy; [email protected]; Tel.: +39-051-6398309 2 Center of Advanced Technologies, Adam Mickiewicz University, 61-712 Pozna´n,Poland Abstract: The guanyl radical or neutral guanine radical G(-H)• results from the loss of a hydrogen atom (H•) or an electron/proton (e–/H+) couple from the guanine structures (G). The guanyl radical exists in two tautomeric forms. As the modes of formation of the two tautomers, their relationship and reactivity at the nucleoside level are subjects of intense research and are discussed in a holistic manner, including time-resolved spectroscopies, product studies, and relevant theoretical calculations. Particular attention is given to the one-electron oxidation of the GC pair and the complex mechanism of the deprotonation vs. hydration step of GC•+ pair. The role of the two G(-H)• tautomers in single- and double-stranded oligonucleotides and the G-quadruplex, the supramolecular arrangement that attracts interest for its biological consequences, are considered. The importance of biomarkers of guanine DNA damage is also addressed. Keywords: guanine; guanyl radical; tautomerism; guanine radical cation; oligonucleotides; DNA; G-quadruplex; time-resolved spectroscopies; reactive oxygen species (ROS); oxidation 1. The Guanine Sink Citation: Chatgilialoglu, C. The Two The free radical chemistry associated with guanine (Gua) and its derivatives, guano- Faces of the Guanyl Radical: sine (Guo), 2’-deoxyguanosine (dGuo), guanosine-50-monophosphate (GMP), and 20- Molecular Context and Behavior. deoxyguanosine-50-monophosphate (dGMP), is of particular interest due to its biological Molecules 2021, 26, 3511. -
Lesson 3 Yet One More Proverb
Lesson 3 Yet One More Proverb 萬物得其本者生,百事得其道者成。道之所在,天下歸之。德之所 在,天下貴之。仁之所在,天下愛之。義之所在,天下畏之。屋漏 者,民去之。水淺者,魚逃之。樹高者,鳥宿之。德厚者,士趨之。 有禮者,民畏之。忠信者,士死之。 VOCABULARY (71–101) 71. 萬 M: wàn J: man, ban K: man Ten thousand. Radical 140 (艸). 72. 物 M: wù J: butsu, motsu, mono K: mul Thing; physical object. 萬物, “the ten thousand things,” is a common expression for all the things in the world. Radical 93 (牛, “cow”). 73. 其 M: qí J: ki, sore, sono K: gi 1. This; that; these; those; its; his; her; their. [possessive and demonstrative adjective]* 2. Perhaps, probably, should. [vague modal adverb] This character is extremely common in literary Chinese constructions. For details of the first meaning, see 3.1. The second meaning will be encountered and explained later (11.6). Radical 12 (八, “eight”). 74. 本 M: bĕn J: hon, moto K: bon [Tree] root; fundamental; basics. In Chinese philosophy, 本 is often used to express important things, first things, or the essential nature of things. Radical 75 (木). 75. 百 M: băi J: byaku, hyaku, momo K: baek One hundred. Radical 106 (白, “white”). Lesson 3 w 2 76. 事 M: shì J: ji, koto, tsukaeru K: sa 1. Thing, matter, affair, occupation, job.* 2. To serve, to work for; to employ, to have as a servant. In modern Mandarin Chinese, 物 (72) tends to apply to physical objects, whereas 事 applies to matters, affairs, and abstract things. This holds true to a certain extent in literary Chi- nese, but there is some confusion of the terms. -
Radical Hydroacylation of C-C and N-N Double Bonds in Air
University College London Radical Hydroacylation of C-C and N-N Double Bonds in Air by Jenna Marie Ahern Submitted in partial fulfilment of the requirements for the degree of Doctor of Philosophy Declaration I, Jenna Marie Ahern, confirm that the work presented in this thesis is my own. Where information has been derived from other sources, I confirm that this has been indicated in the thesis. Jenna Marie Ahern October 2010 Radical Hydroacylation of C-C and N-N Double Bonds in Air Jenna Marie Ahern Abstract The formation of C-C and C-N bonds in modern organic synthesis is a key target for methodological advancement. Current methods of C-C and C-N bond formation often involve the use of expensive catalysts, or sub-stoichiometric reagents, which can lead to the generation of undesirable waste products. This thesis describes a novel and environmentally benign set of reaction conditions for the formation of C-C and C-N bonds by hydroacylation and this is promoted by mixing two reagents, an aldehyde and an electron-deficient double bond, under freely available atmospheric oxygen at room temperature Chapter 1 will provide an introduction to the thesis and mainly discusses methods for C-C bond formation, in particular, radical chemistry and hydroacylation. Chapter 2 describes the hydroacylation of vinyl sulfonates and vinyl sulfones (C-C double bonds) with aliphatic and aromatic aldehydes with a discussion and evidence for the mechanism of the transformation. Chapter 3 details the synthesis of precursors for intramolecular cyclisations and studies into aerobic intramolecular cyclisations. Chapter 4 describes the hydroacylation of vinyl phosphonates (C-C double bonds) and diazocarboxylates (N-N double bonds) with aliphatic and aromatic aldehydes bearing functional groups. -
UNIVERSITY of CALIFORNIA Los Angeles Biomimetic Synthesis Of
UNIVERSITY OF CALIFORNIA Los Angeles Biomimetic Synthesis of Noble Metal Nanoparticles and Their Applications as Electro-catalysts in Fuel Cells A dissertation submitted in partial satisfaction of the requirements for the degree Doctor of Philosophy in Materials Science and Engineering by Yujing Li 2012. © Copyright by Yujing Li 2012 ABSTRACT OF THE DISSERTATION Biomimetic Synthesis of Noble Metal Nanoparticles and Their Applications as Electro-catalysts in Fuel Cells by Yujing Li Doctor of Philosophy in Materials Science and Engineering University of California, Los Angeles, 2012 Professor Yu Huang, Chair Today, proton electrolyte membrane fuel cell (PEMFC) and direct methanol fuel cell (DMFC) are attractive power conversion devices that generate fairly low or even no pollution, and considered to be potential to replace conventional fossil fuel based power sources on automobiles. The operation and performance of PEMFC and DMFC depend largely on electro-catalysts positioned between the electrode and the membranes. The most commonly used electro-catalysts for PEMFC and DMFC are Pt-based noble metal nanoparticles, so catalysts share close to 50% of the total cost of the fuel cell. The synthesis of such nanoscale electro-catalysts are commonly limited to harsh conditions (high temperature, high pressure), organic solvent, high amount of stabilizing agent, to achieve the size and morphological control. There is no rational guideline for the ii selection of stabilizing agent for specific materials, leading to the current "trial and error" -
Unimolecular N−OH Homolysis, Stepwise Dehydration, Or Triazene Ring-Opening Jian Yin,† Rainer Glaser,*,† and Kent S
Article pubs.acs.org/crt On the Reaction Mechanism of Tirapazamine Reduction Chemistry: Unimolecular N−OH Homolysis, Stepwise Dehydration, or Triazene Ring-Opening Jian Yin,† Rainer Glaser,*,† and Kent S. Gates*,†,‡ † ‡ Departments of Chemistry and Biochemistry, University of Missouri, Columbia, Missouri 65211, United States *S Supporting Information ABSTRACT: The initial steps of the activation of tirapazamine (TPZ, 1, 3-amino-1,2,4-benzotriazine 1,4-N,N-dioxide) under hypoxic con- ditions consist of the one-electron reduction of 1 to radical anion 2 and the protonation of 2 at O(N4) or O(N1) to form neutral radicals 3 and 4, respectively. There are some questions, however, as to whether radicals 3 and/or 4 will then undergo N−OH homolyses 3 → 5 + ·OH and 4 → 6 + ·OH or, alternatively, whether 3 and/or 4 may → react by dehydration and form aminyl radicals via 3 11 +H2O and 4 → → 12 +H2O or phenyl radicals via 3 17 +H2O. These outcomes might depend on the chemistry after the homolysis of 3 and/or 4, that is, dehydration may be the result of a two-step sequence that involves N−OH homolysis and formation of ·OH aggregates of 5 and 6 followed by H-abstraction within the ·OH aggregates to form hydrates of aminyls 11 and 12 or of phenyl 17. We studied these processes with configuration interaction theory, perturbation theory, and density functional theory. All stationary structures of OH aggregates of 5 and 6,ofH2O aggregates of 11, 12, and 17, and of the transition state structures for H-abstraction were located and characterized by vibrational analysis and with methods of electron and spin-density analysis. -
Deoxyuridine-5'-Phosphate, Uridine-5-Phosphate and Thymidine-5-Phosphate
The SO 4-induced Oxidation of 2'-Deoxyuridine-5'-phosphate, Uridine-5-phosphate and Thymidine-5-phosphate. An ESR Study in Aqueous Solution Knut Hildenbrand Max-Planck-Institut für Strahlenchemie, Stiftstraße 34, D-4330 Mülheim a. d. Ruhr, Bundesrepublik Deutschland Z. Naturforsch. 45c, 47-58 (1990); received August 9, 1989 In memoriam Professor Dr. O. E. Polansky Free Radicals, ESR, Pyrimidine-5'-nucleotides, Radical Cation Reactions of photolytically generated SOJ with 2'-deoxyuridine-5'-phosphate (5'-dUMP), uridine-5'-phosphate (5'-UMP) and thymidine-5'-phosphate (5'-dTMP) were studied by ESR spectroscopy in aqueous solution under anoxic conditions. From 5'-dUMP and 5'-UMP the 5',5-cyclic phosphate- 6-yl radicals 10 and 11 were generated (pH 2-11) whereas from 5'-dTMP at .pH 3-8 the 5,6-dihydro-6-hydroxy-5-yl radical 14 and at pH 7-11 the 5-methylene-2'-deoxyuridine-5'-phosphate radical 15 was produced. In the experiments with 5'-UMP in addition to radical 11 the signals of sugar radicals 12 and 13 were detected. It is assumed that the base radical cations act as intermediates in the SO^-induced radical reac tions. The 5'-phosphate group adds intramolecularly to the C(5)-C(6) bond of the uraclilyl radical cation whereas the thymidyl radical cation of 5'-dTMP reacts with H20 at pH < 8 to yield the 6-OH-5-yl adduct 14 and deprotonates at pH > 7 thus forming the allyl-type radical 15. In 5'-UMP transfer of the radical site from the base to the sugar moiety competes with intramolecular phosphate addition.