STRATEGIES FOR ORGANIC DRUG SYNTHESIS AND DESIGN
Second Edition
DANIEL LEDNICER
STRATEGIES FOR ORGANIC DRUG SYNTHESIS AND DESIGN
STRATEGIES FOR ORGANIC DRUG SYNTHESIS AND DESIGN
Second Edition
DANIEL LEDNICER Copyright # 2009 by John Wiley & Sons, Inc. All rights reserved
Published by John Wiley & Sons, Inc., Hoboken, New Jersey Published simultaneously in Canada
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Library of Congress Cataloging-in-Publication Data is available. ISBN 978-0-470-19039-5
Printed in the United States of America
10987654321 To the memory of now-defunct laboratories where once I practiced my craft: Building H at G.D. Searle in Skokie, Upjohn’s Building 25 in Kalamazoo and the diminutive Chemistry Annex at the Adria Laboratories just outside Dublin, Ohio.
CONTENTS
PREFACE xv
1 PROSTAGLANDINS, PEPTIDOMIMETIC COMPOUNDS, AND RETINOIDS 1
1.1 Prostaglandins / 1 1.2 Peptidomimetic Compounds / 19 1.2.1 Protease Inhibitors / 19 1.2.1.1 Introduction / 19 1.2.1.2 Renin Inhibitors / 20 1.2.1.3 Antiviral Compounds / 22 1.2.2 Fibrinogen Receptor Antagonists / 30 1.2.3 Antitumor Peptidomimetic / 34 1.3 Retinoids / 35 1.4 A Miscellaneous Drug / 38 References / 40
2 DRUGS BASED ON A SUBSTITUTED BENZENE RING 43
2.1 Arylethanolamines / 43 2.2 Aryloxypropanolamines / 54 2.2.1 b-Blockers / 54 2.2.2 Non-Tricyclic Antidepressants (SSRIs) / 57
vii viii CONTENTS
2.3 Arylsulfonic Acid Derivatives / 61 2.3.1 Antibacterial Sulfonamides / 61 2.3.2 Diuretic Agents / 63 2.3.3 Oral Hypoglycemic Agents / 65 2.3.4 Miscellaneous Arylsulfonamides / 70 2.4 Arylacetic and Arylpropionic Acids / 71 2.4.1 Arylacetic acid “Fenacs” / 71 2.4.2 Arylpropionic Acid “Profens” / 75 2.4.3 Arylacetamide Antiarrhythmic Compounds / 78 2.5 Leukotriene Antagonists / 81 2.6 Miscellaneous Compounds / 84 References / 86
3 INDENES, NAPHTHALENES, AND OTHER POLYCYCLIC AROMATIC COMPOUNDS 89
3.1 Indenes / 90 3.2 Naphthalenes / 94 3.2.1 Antifungal Agents / 94 3.2.2 Miscellaneous Naphthalenes / 97 3.3 Partly Reduced Naphthalenes / 99 3.3.1 Bicyclic Retinoids / 99 3.3.2 Another b-Blocker / 101 3.3.3 Aminotetralin CNS Agents / 102 3.4 Tricyclic Compounds / 105 3.4.1 Dibenzocycloheptane and Dibenzocycloheptene Antidepressants / 105 3.4.2 Antidepressants Based on Dihydroanthracenes / 110 3.4.3 Anthraquinones: The “Antrone” Chemotherapy Agents / 113 References / 116
4 STEROIDS; PART 1: ESTRANES, GONANES, AND ANDROSTANES 119
4.1 Introduction / 119 4.2 Steroid Starting Materials / 120 4.2.1 From Diosgenin / 121 4.2.2 From Soybean Sterols / 121 4.3 Estranes / 123 4.3.1 Synthesis of Estranes / 123 4.3.2 Drugs Based on Estranes / 125 CONTENTS ix
4.4 Gonanes, the 19-nor Steroids / 128 4.4.1 Progestational Compounds / 128 4.4.2 Progesterone Antagonists / 137 4.4.3 Androgenic Compounds / 140 4.5 Androstanes / 142 4.5.1 Starting Materials / 142 4.5.2 Androgenic Compounds / 143 4.5.3 Antiandrogens / 150 4.5.4 Aldosterone Antagonists / 153 References / 157
5 STEROIDS; PART 2: COMPOUNDS RELATED TO PROGESTERONE, CORTISONE, AND CHOLESTEROL 161
5.1 Introduction / 161 5.2 Progestins / 161 5.3 Corticosteroids / 169 5.4 Compounds Derived from Cholesterol / 186 References / 189
6 NONSTEROIDAL SEX HORMONES AND THEIR ANTAGONISTS 191
6.1 Introduction / 191 6.2 Estrogens / 191 6.2.1 Nonsteroidal Estrogens / 191 6.2.2 Nonsteroid Estrogen Antagonists / 195 6.2.2.1 Arylethylenes / 195 6.2.2.2 Carbocyclic Ethylenes Fused to a Benzene Ring / 200 6.2.2.3 Heterocyclic Ethylenes Fused to a Benzene Ring / 203 6.2.3 Nonsteroid Androgen Antagonists / 207 6.2.4 A Nonsteroid Progestin Agonist / 209 References / 210
7 OPIOID ANALGESICS 213
7.1 Introduction / 213 7.2 Drugs Derived from Morphine / 214 7.3 Compounds Prepared from Thebaine / 216 x CONTENTS
7.4 Morphinans / 219 7.5 Benzomorphans / 223 7.6 Analgesics Based on Nonfused Piperidines / 226 7.6.1 4-Arylpiperidines: Meperidine and Its Analogues / 226 7.6.2 4-Amidopiperidines: Compounds Related to Fentanyl / 229 7.6.3 Miscellaneous Compounds / 234 7.6.3.1 1,2-Bisaminoceclohexanes / 234 7.6.3.2 Open Chain Compounds / 236 References / 237
8 DRUGS BASED ON FIVE-MEMBERED HETEROCYCLES 239
8.1 Introduction / 239 8.2 Rings that Contain One Heteroatom / 239 8.2.1 Furans / 239 8.2.2 Pyrrole and Its Derivatives / 241 8.2.2.1 NSAIDS and a “Statin” / 241 8.2.2.2 ACE Inhibitors / 246 8.2.2.3 Miscellaneous Compounds / 251 8.3 Rings that Contain Two Heteroatoms / 258 8.3.1 Cyclooxygenase 2 (COX-2) Inhibitor NSAIDs / 258 8.3.2 Oxazoles, Isoxazoles, and their Derivatives / 262 8.3.3 Imidazoles / 269 8.3.4 Imidazolines / 287 8.3.5 Modified Imidazoles / 291 8.3.6 Pyrrazolones and Pyrrazolodiones / 295 8.3.7 Thiazoles and Related Sulfur–Nitrogen-Containing Heterocycles / 298 8.4 Rings that Contain Three or More Heteroatoms / 304 8.4.1 1,2,4-Oxadiazoles / 304 8.4.2 Triazoles / 306 8.4.3 Thiadiazoles / 311 8.4.4 Tetrazoles / 313 References / 314
9 DRUGS BASED ON SIX-MEMBERED HETEROCYCLES 319
9.1 Rings that Contain One Heteroatom / 319 9.1.1 Pyrans / 319 9.1.2 Pyridines / 323 9.1.3 1,4-Dihydropyridines / 329 CONTENTS xi
9.1.4 Piperidines / 332 9.1.4.1 Psychotropic Compounds / 332 9.1.4.2 Miscellaneous Piperidines / 336 9.1.5 Pyridones and Glutarimides / 337 9.2 Rings that Contain Two Heteroatoms / 341 9.2.1 Pyridazines / 341 9.2.2 Pyrimidines / 344 9.2.2.1 Antibacterial Agents / 344 9.2.2.2 Antiviral and Antineoplastic Pyrimidines / 348 9.2.2.3 Miscellaneous Pyrimidines / 356 9.2.3 Pyrimidones / 359 9.2.4 Triketopyrimidines: The Barbiturates / 363 9.2.5 Pyrazines / 364 9.2.6 Piperazines / 366 9.3 Rings Containing Three Heteroatoms: The Triazines / 376 References / 379
10 FIVE-MEMBERED HETEROCYCLES FUSED TO A BENZENE RING 383
10.1 Compounds that Contain One Heteroatom / 383 10.1.1 Benzofurans / 383 10.1.2 Indoles / 389 10.1.3 Indolines and Isoindolines / 401 10.2 Compounds that Contain Two Heteroatoms / 407 10.2.1 Indazoles / 407 10.2.2 Benzimidazoles / 408 10.2.3 Benzoxazoles and Benzisoxazoles / 419 10.2.4 Benzothiazoles / 421 10.3 Compounds that Contain Three Heteroatoms / 423 References / 425
11 SIX-MEMBERED HETEROCYCLES FUSED TO A BENZENE RING 429
11.1 Compounds that Contain One Heteroatom / 429 11.1.1 Coumarins / 429 11.1.2 Chromones / 432 11.1.3 Benzopyrans / 435 11.1.4 Quinolines / 440 11.1.4.1 Antimalarial Compounds / 440 11.1.4.2 Other Quinolines / 444 xii CONTENTS
11.1.5 Quinolones / 454 11.1.5.1 Antibacterial Agents / 454 11.1.5.2 Miscellaneous Quinolones / 462 11.1.6 Isoquinoline and Its Derivatives / 463 11.2 Compounds that Contain Two Heteroatoms / 467 11.2.1 Benzodioxans / 467 11.2.2 Miscellaneous Fused Rings that Include Oxygen / 470 11.2.3 Cinnolines and Phthalazines / 472 11.2.4 Quinazolines / 476 11.2.5 Quinazolones / 482 11.3 Compounds that Contain Three Heteroatoms / 488 References / 490
12 SEVEN-MEMBERED HETEROCYCLIC RINGS FUSED TO BENZENE 495
12.1 Compounds with a Single Heterocyclic Atom / 495 12.2 Compounds with Two Heteroatoms / 499 12.2.1 Benzodiazepine Anxiolytic Agents / 499 12.2.2 Other Seven-Membered Heterocycles Fused to a Benzene Ring / 508 References / 513
13 HETEROCYCLES FUSED TO TWO AROMATIC RINGS 515
13.1 Compounds Containing a Single Heteroatom / 515 13.1.1 Derivatives of Dibenzopyran and Dibenzoxepin / 515 13.1.2 Dibenzo Heterocycles Containing One Ring Nitrogen Atom / 520 13.1.3 Dibenzo Heterocycles with One Sulfur Atom / 527 13.2 Compounds Containing Two Heteroatoms / 532 13.2.1 Phenothiazines / 532 13.2.2 A Dibenzoxazine / 535 13.2.3 Dibenzodiazepines, Dibenzoxazepines, and a Dibenzothiazepine / 536 13.3 Pyridine-Based Fused Tricyclic Compounds / 540 References / 543
14 BETA LACTAM ANTIBIOTICS 545
14.1 Penicillins / 546 14.2 Cephalosporins / 558 CONTENTS xiii
14.3 Monobactams / 572 References / 574
15 HETEROCYCLES FUSED TO OTHER HETEROCYCLIC RINGS 577
15.1 Two Fused Five-Membered Rings / 577 15.2 Five-Membered Heterocycles Fused to Six-Membered Rings / 580 15.2.1 Compounds Containing Two Heteroatoms / 580 15.2.2 Compounds Containing Three Heteroatoms / 586 15.2.3 Compounds with Four Heteroatoms / 593 15.2.3.1 Purines / 593 15.3 Two Fused Six-Membered Rings / 611 15.3.1 Compounds Related to Methotrexate / 611 15.3.2 Other Fused Heterocyclic Compounds / 615 15.4 Heterodiazepines / 620 15.5 Heterocyclic Compounds with Three or More Rings / 622 References / 629
SUBJECT INDEX 633
REACTION INDEX 651
CROSS INDEX OF BIOLOGICAL ACTIVITIES 671
PREFACE
“One of the most interesting aspects of organic chemistry is that of dealing with the building-up of complex substances from simpler ones. The synthesis of organic compounds, whether for scientific or industrial purposes, has been very important in the development of the science and is still of great importance today.” Those words, set down 80 years ago as the opening for a chapter on organic synthesis in Conant’s pioneering textbook Organic Chemistry, still very aptly describes the important role held by that aspect of the discipline. The use of organic transformations for the preparation of compounds with more or less complex structures has had a profound influence on both organic chemistry and, more importantly, on modern civilization. One need only bring to mind medicinal agents at one extreme and, on the other, the monomers used for the plethora of polymers that have provided the basis for a whole new materials science. The practice of organic synthesis covers an extremely broad range, from the highly practical, economically driven preparation of a tonnage chemical to a multistep, very elegant enantiospecific synthesis of a complex natural product. This very diversity may account for the relative paucity of books devoted specifically to the subject. The manipulation used for the preparation of therapeutic agents seems to offer a middle ground between those extremes in complexity. The published syntheses for these agents are typically relatively short, seldom exceeding 10 or so steps. The target compounds for these syntheses do, however, cover a very wide range of structural types, encompassing both carbocyclic and heterocyclic compounds. The chemistry moreover includes a very broad selection of organic reactions. The published syntheses most often describe the route that was used in the discovery of