that are preferentially expressed in Type II cells Figure 4B

Rank Moltid 3'ACC Title #Cell_lines Variance PCC 1 GC14994 N68605 HIRA HIR histone regulation defective homolog A (S. cerevisiae) 22 0.03 0.765 2 GC16351 W93587 IDH3A isocitrate dehydrogenase 3 (NAD+) alpha 22 0.023 0.746 3 GC16428 W94765 PRO1914 PRO1914 22 0.045 0.742 4 GC15528 N98720 MTHFD2 methylene tetrahydrofolate dehydrogenase (NAD+ dependent), methenyltetrahydrofolate cyclohydrolase 22 0.039 0.728 5 GC13629 H65116 SLC12A2 solute carrier family 12 (sodium/potassium/chloride transporters), member 2 22 0.109 0.725 6 GC16829 AA022611 PPT1 palmitoyl-protein thioesterase 1 (ceroid-lipofuscinosis, neuronal 1, infantile) 22 0.025 0.72 7 GC11352 H16813 ESTs 22 0.027 0.713 8 GC11877 T90563 CHC1 condensation 1 22 0.025 0.709 9 GC13900 H88979 19 0.11 0.701 10 GC12044 T97758 DKFZP564O092DKFZP564O092 protein 22 0.033 0.691 11 GC9986 AA045569 XPO5 exportin 5 22 0.02 0.685 12 GC14194 N35250 ESTs, Weakly similar to PRO0478 protein 22 0.025 0.679 13 GC18144 AA007448 RBBP4 retinoblastoma binding protein 4 22 0.025 0.679 14 GC10761 R44058 SIN3A SIN3 homolog A, transcriptional regulator (yeast) 22 0.026 0.678 15 GC14088 N21126 C20orf45 open reading frame 45 22 0.043 0.678 16 GC15554 W19329 ARHGAP8 Rho GTPase activating protein 8 19 0.037 0.672 17 GC16658 AA017560 SMC1L1 SMC1 structural maintenance of 1-like 1 (yeast) 22 0.041 0.669 18 GC14081 N20230 FREB Fc receptor homolog expressed in B cells 22 0.04 0.669 19 GC10329 AA053076 RRM2 ribonucleotide reductase M2 polypeptide 22 0.068 0.661 20 GC17958 AA001905 SCO2 SCO cytochrome oxidase deficient homolog 2 (yeast) 22 0.024 0.659 21 GC10231 AA052960 DKC1 dyskeratosis congenita 1, dyskerin 22 0.021 0.659 22 GC17443 AA057000 FLJ13052 NAD kinase 22 0.023 0.657 23 GC18386 AA029215 TD-60 RCC1-like 22 0.025 0.656 24 GC13638 H65019 SSA2 Sjogren syndrome antigen A2 (60kDa, ribonucleoprotein autoantigen SS-A/Ro) 22 0.025 0.65 25 GC19153 AA043478 ZFP36 zinc finger protein 36, C3H type, homolog (mouse) 22 0.059 0.649 26 GC15511 N94487 NR4A1 nuclear receptor subfamily 4, group A, member 1 22 0.03 0.649 27 GC18118 AA005362 SLC25A11 solute carrier family 25 (mitochondrial carrier; oxoglutarate carrier), member 11 21 0.032 0.648 28 GC11086 H05782 PAPOLA poly(A) polymerase alpha 22 0.024 0.644 29 GC14124 N25724 TCF20 transcription factor 20 (AR1) 22 0.038 0.642 30 GC11294 H15546 PDCD8 programmed cell death 8 (apoptosis-inducing factor) 22 0.024 0.642 31 GC15883 W38402 TRIP15 thyroid receptor interacting protein 15 22 0.024 0.641 32 GC10135 AA056591 HCDI HCDI protein 22 0.023 0.641 33 GC11412 H18946 LILRB2 leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 2 22 0.032 0.638 34 GC18281 AA027283 BAG1 BCL2-associated athanogene 22 0.031 0.636 35 GC10448 AA055612 NQO1 NAD(P)H dehydrogenase, quinone 1 22 0.024 0.635 36 GC17448 AA052900 VARS2 valyl-tRNA synthetase 2 22 0.036 0.633 37 GC16779 AA020865 EWSR1 Ewing sarcoma breakpoint region 1 22 0.023 0.632 38 GC17892 W90451 H2AFZ H2A histone family, member Z 22 0.023 0.631 39 GC12581 H03490 C14orf104 open reading frame 104 22 0.04 0.631 40 GC12207 R16988 GMEB1 glucocorticoid modulatory element binding protein 1 22 0.034 0.631 41 GC10954 R55693 KIAA0319 KIAA0319 gene product 22 0.068 0.63 42 GC15076 N73991 Homo sapiens cDNA FLJ12776 fis, clone NT2RP2001678. 22 0.028 0.624 43 GC18322 AA027834 DKFZP564G2022DKFZP564G2022 protein 22 0.036 0.624 44 GC10621 R20659 EST 22 0.038 0.624 45 GC14405 N46321 PAPOLA poly(A) polymerase alpha 22 0.033 0.623 46 GC17583 W84708 LOC253039 hypothetical protein LOC253039 22 0.027 0.621 47 GC15375 N92698 PAICS phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase 22 0.028 0.621 48 GC15024 N75945 ESTs 22 0.148 0.617 49 GC11054 R60160 TOP1 topoisomerase (DNA) I 22 0.033 0.616 50 GC13802 N55524 HSU79252 hypothetical protein HSU79252 22 0.022 0.615 51 GC16024 W73251 ACAS2 acetyl-Coenzyme A synthetase 2 (ADP forming) 22 0.04 0.612 52 GC10320 AA053461 ASNS asparagine synthetase 22 0.087 0.611 53 GC10316 AA053254 SRPK1 SFRS protein kinase 1 22 0.036 0.608 54 GC10027 AA056538 FLJ11210 hypothetical protein FLJ11210 22 0.035 0.605 55 GC10125 AA056394 CA9 carbonic anhydrase IX 22 0.048 0.605 56 GC9918 AA045032 RPAC2 likely ortholog of mouse RNA polymerase 1-3 (16 kDa subunit) 22 0.03 0.604 57 GC10625 R20750 FOS v-fos FBJ murine osteosarcoma viral oncogene homolog 22 0.227 0.604 58 GC19273 AA043830 MRPS30 mitochondrial ribosomal protein S30 22 0.026 0.602 59 GC16840 AA024441 CECR5 cat eye syndrome chromosome region, candidate 5 22 0.056 0.601 60 GC14036 H98122 NS nucleostemin 22 0.025 0.599 61 GC11983 T92198 ESTs, Weakly similar to PPCE_HUMAN Prolyl endopeptidase (Post-proline cleaving ) (PE) 22 0.031 0.597 62 GC15054 N67031 ESTs 21 0.028 0.597 63 GC14871 N71719 EPM2A epilepsy, progressive myoclonus type 2, Lafora disease (laforin) 22 0.03 0.594 64 GC15065 N74607 AQP3 aquaporin 3 22 0.2 0.593 65 GC10150 AA045606 22 0.026 0.589 66 GC12189 R10992 MAD2L1 MAD2 mitotic arrest deficient-like 1 (yeast) 22 0.033 0.587 67 GC19065 AA044299 Homo sapiens mRNA; cDNA DKFZp434J218 (from clone DKFZp434J218) 22 0.025 0.583 68 GC17551 W81120 MRPS31 mitochondrial ribosomal protein S31 22 0.026 0.583 69 GC13310 H70485 MBNL3 muscleblind-like 3 (Drosophila) 21 0.076 0.581 70 GC17153 AA039521 CTCF CCCTC-binding factor (zinc finger protein) 22 0.024 0.58 71 GC18532 AA031468 PA200 activator 200 kDa 22 0.02 0.58 72 GC17617 W85692 STS steroid sulfatase (microsomal), arylsulfatase C, isozyme S 21 0.065 0.579 73 GC16087 W72340 P29 GCIP-interacting protein p29 22 0.025 0.577 74 GC19294 AA043853 FLJ21901 hypothetical protein FLJ21901 22 0.039 0.574 75 GC12174 R16851 HIST1H2AG histone 1, H2ag 19 0.061 0.574 76 GC15079 N74017 RCOR REST corepressor 22 0.041 0.572 77 GC10120 AA047302 HDCL hHDC for homolog of Drosophila headcase 22 0.024 0.571 78 GC10344 AA053169 RPS8 ribosomal protein S8 22 0.024 0.57 79 GC13317 H70323 22 0.026 0.569 80 GC16776 AA020786 PUM2 pumilio homolog 2 (Drosophila) 22 0.022 0.568 81 GC17537 W92036 LOC255738 hypothetical protein LOC255738 21 0.25 0.568 82 GC10239 AA052970 NIFU nitrogen fixation cluster-like 21 0.03 0.567 83 GC12426 R76676 IPO11 11 21 0.022 0.567 84 GC16954 AA025883 MAZ MYC-associated zinc finger protein (purine-binding transcription factor) 22 0.032 0.566 85 GC14655 N67180 RHD Rhesus blood group, D antigen 22 0.022 0.565 86 GC12716 H28002 DXYS155E DNA segment on chromosome X and Y (unique) 155 expressed sequence 22 0.022 0.565 87 GC18360 AA029751 PSME2 proteasome (prosome, macropain) activator subunit 2 (PA28 beta) 22 0.024 0.564 88 GC15048 N73498 HABP2 hyaluronan binding protein 2 21 0.062 0.564 89 GC16938 AA025931 PPP1R10 protein phosphatase 1, regulatory subunit 10 22 0.056 0.564 90 GC11888 T84483 PAPOLA poly(A) polymerase alpha 22 0.027 0.563 91 GC13907 H89127 EST 19 0.095 0.562 92 GC13603 H52671 ETS2 v-ets erythroblastosis virus E26 oncogene homolog 2 (avian) 22 0.086 0.562 93 GC11579 T41154 ESTs 22 0.023 0.562 94 GC10146 AA056338 NOL5A nucleolar protein 5A (56kDa with KKE/D repeat) 22 0.052 0.562 95 GC16983 AA025783 RPA2 , 32kDa 22 0.037 0.562 96 GC13939 N22386 NR4A2 nuclear receptor subfamily 4, group A, member 2 21 0.226 0.561 97 GC16061 W72991 MRPL12 mitochondrial ribosomal protein L12 22 0.032 0.561 98 GC12518 R82366 dJ55C23.6 dJ55C23.6 gene 22 0.055 0.56 99 GC11410 H18919 22 0.026 0.56 100 GC15591 W52996 AUH AU RNA binding protein/enoyl-Coenzyme A hydratase 22 0.075 0.557 101 GC14881 N72074 POLR2H polymerase (RNA) II (DNA directed) polypeptide H 22 0.026 0.557 102 GC17490 AA058863 Homo sapiens clone 23718 mRNA sequence 22 0.026 0.557 103 GC18001 AA002120 ARRB2 , beta 2 22 0.058 0.557 104 GC15304 N90790 ADH1B alcohol dehydrogenase IB (class I), beta polypeptide 22 0.024 0.556 105 GC11531 R15898 FLJ30525 hypothetical protein FLJ30525 22 0.066 0.555 106 GC14756 N62730 MBP basic protein 22 0.022 0.554 107 GC15718 W45728 LOC92906 hypothetical protein BC008217 22 0.08 0.553 108 GC11821 T73940 18 0.044 0.553 109 GC14980 N66027 SPAG9 sperm associated antigen 9 22 0.04 0.553 110 GC18680 AA034941 KIAA0830 KIAA0830 protein 22 0.031 0.552 111 GC14528 N50987 DXS1283E GS2 gene 22 0.047 0.552 112 GC13167 H59260 CDC25A cell division cycle 25A 22 0.033 0.551 113 GC17929 AA001867 FLJ10569 hypothetical protein FLJ10569 22 0.033 0.551 114 GC13892 H88497 BBX bobby sox homolog (Drosophila) 22 0.033 0.551 115 GC13783 N55093 DLAT dihydrolipoamide S-acetyltransferase (E2 component of pyruvate dehydrogenase complex) 22 0.037 0.549 116 GC16340 W93355 HADH2 hydroxyacyl-Coenzyme A dehydrogenase, type II 22 0.035 0.549 117 GC13718 H91693 22 0.032 0.548 118 GC14217 N33014 SACM1L SAC1 suppressor of actin mutations 1-like (yeast) 22 0.036 0.548 119 GC13757 N38807 22 0.037 0.548 120 GC10143 AA045588 TAF12 TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 20kDa 22 0.021 0.547 121 GC10256 AA052933 IFIT1 interferon-induced protein with tetratricopeptide repeats 1 22 0.033 0.546 122 GC18546 AA031941 RALGDS ral guanine nucleotide dissociation stimulator 22 0.04 0.546 123 GC18268 AA010261 DHRS4 dehydrogenase/reductase (SDR family) member 4 22 0.03 0.546 124 GC15602 W55908 PCDH1 protocadherin 1 (cadherin-like 1) 21 0.043 0.546 125 GC16885 AA024864 KRT15 keratin 15 22 0.022 0.545 126 GC15221 N80672 Human clone 23612 mRNA sequence 21 0.155 0.544 127 GC10246 AA052983 PFN1 profilin 1 22 0.098 0.544 128 GC18874 AA039351 DDX24 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 24 22 0.028 0.544 129 GC16476 W96218 EBP emopamil binding protein (sterol isomerase) 22 0.04 0.543 130 GC18177 AA011408 DKFZP564O1664hypothetical protein DKFZp564O1664 22 0.032 0.542 131 GC11257 H14343 CDC25B cell division cycle 25B 22 0.038 0.542 132 GC12845 H49590 FLJ22170 hypothetical protein FLJ22170 22 0.043 0.541 133 GC10795 R44163 EST 22 0.021 0.54 134 GC10321 AA053265 EEF1A1 eukaryotic translation elongation factor 1 alpha 1 22 0.02 0.539 135 GC18324 AA027837 RPGR retinitis pigmentosa GTPase regulator 22 0.057 0.539 136 GC17503 W93107 EIF3S6IP eukaryotic translation initiation factor 3, subunit 6 interacting protein 22 0.032 0.538 137 GC10283 AA053423 EIF5 eukaryotic translation initiation factor 5 22 0.021 0.536 138 GC17484 AA059239 ESTs 22 0.031 0.536 139 GC12390 R70701 EPSTI1 epithelial stromal interaction 1 (breast) 19 0.134 0.536 140 GC14909 N67844 IRF4 interferon regulatory factor 4 22 0.037 0.535 141 GC16908 AA025844 IGHM immunoglobulin heavy constant mu 22 0.022 0.534 142 GC14811 N62070 PIGA phosphatidylinositol glycan, class A (paroxysmal nocturnal hemoglobinuria) 22 0.033 0.534 143 GC17097 AA039854 Homo sapiens mRNA full length insert cDNA clone EUROIMAGE 26539. 22 0.021 0.534 144 GC10422 AA055467 ODC1 ornithine decarboxylase 1 22 0.026 0.533 145 GC10269 AA053395 ERH enhancer of rudimentary homolog (Drosophila) 22 0.023 0.532 146 GC15665 W15298 KIAA1423 KIAA1423 protein 22 0.028 0.531 147 GC15350 N90033 ETS2 v-ets erythroblastosis virus E26 oncogene homolog 2 (avian) 22 0.049 0.531 148 GC14242 N33510 ESTs, Weakly similar to C-type lectin 1 22 0.06 0.53 149 GC15014 N71436 CEACAM1 carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein) 20 0.204 0.529 150 GC18045 AA004303 FLJ12770 hypothetical protein FLJ12770 22 0.034 0.528 151 GC14845 N62266 SLC2A5 solute carrier family 2 (facilitated glucose/fructose transporter), member 5 22 0.03 0.528 152 GC15555 W04499 AQR likely ortholog of mouse aquarius 22 0.026 0.527 153 GC9857 AA047287 NHP2L1 NHP2 non-histone chromosome protein 2-like 1 (S. cerevisiae) 22 0.026 0.525 154 GC10859 R48969 KPNA1 karyopherin alpha 1 (importin alpha 5) 22 0.023 0.524 155 GC12056 T98860 22 0.067 0.523 156 GC12670 R72827 ICAM3 intercellular adhesion molecule 3 22 0.048 0.523 157 GC18870 AA039333 LRPPRC leucine-rich PPR-motif containing 22 0.034 0.523 158 GC14173 N29574 RAGD Rag D protein 21 0.086 0.523 159 GC10226 AA056272 ABCB7 ATP-binding cassette, sub-family B (MDR/TAP), member 7 22 0.029 0.523 160 GC15028 N76002 PAICS phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase 22 0.024 0.523 161 GC11576 T41107 DKFZp564B0769SR rich protein 22 0.097 0.522 162 GC13409 H88145 20 0.025 0.522 163 GC19035 AA044054 KIAA1724 KIAA1724 protein 22 0.035 0.522 164 GC11590 T67289 ESTs 18 0.166 0.522 165 GC17481 AA059227 PLEKHB1 pleckstrin homology domain containing, family B (evectins) member 1 21 0.131 0.521 166 GC11195 H10832 EST 22 0.051 0.521 167 GC16748 AA019164 PCK2 phosphoenolpyruvate carboxykinase 2 (mitochondrial) 22 0.069 0.521 168 GC14826 N59355 ZBTB1 zinc finger and BTB domain containing 1 22 0.021 0.521 169 GC15289 N92237 FGFR1 fibroblast growth factor receptor 1 (fms-related tyrosine kinase 2, Pfeiffer syndrome) 22 0.026 0.521 170 GC12584 H02832 FLJ23476 hypothetical protein FLJ23476 22 0.029 0.521 171 GC10042 AA056577 FLJ20400 hypothetical protein FLJ20400 20 0.094 0.52 172 GC19223 AA043879 MRPL23 mitochondrial ribosomal protein L23 21 0.026 0.52 173 GC13184 H60815 KIAA0053 KIAA0053 gene product 22 0.093 0.519 174 GC14522 N50958 SREBF2 sterol regulatory element binding transcription factor 2 22 0.026 0.519 175 GC16031 W74489 NMB neuromedin B 22 0.059 0.519 176 GC18052 AA004633 TF transferrin 20 0.107 0.518 177 GC9932 AA044919 EIF4E eukaryotic translation initiation factor 4E 22 0.058 0.517 178 GC19177 AA043105 TMP21 transmembrane trafficking protein 22 0.054 0.517 179 GC10263 AA053001 22 0.022 0.517 180 GC17113 AA040270 ESTs, Weakly similar to neuronal thread protein 22 0.054 0.517 181 GC17152 AA040808 ADPRT ADP-ribosyltransferase (NAD+; poly (ADP-ribose) polymerase) 22 0.035 0.514 182 GC16355 W93726 SERPINB5 serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 5 22 0.027 0.513 183 GC15605 W32008 MGC3329 hypothetical protein MGC3329 22 0.045 0.513 184 GC10373 AA055598 BAT3 HLA-B associated transcript 3 22 0.057 0.513 185 GC10519 AA058887 IGFBP2 insulin-like growth factor binding protein 2, 36kDa 22 0.022 0.512 186 GC15292 N92252 WDR9 WD repeat domain 9 22 0.032 0.512 187 GC14260 N40463 TNKS tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase 22 0.058 0.512 188 GC16169 W74138 TP53BP1 tumor protein binding protein, 1 22 0.029 0.512 189 GC18183 AA011614 ANG angiogenin, ribonuclease, RNase A family, 5 22 0.027 0.512 190 GC17166 AA041375 21 0.02 0.511 191 GC12701 H26371 PREP prolyl endopeptidase 22 0.035 0.511 192 GC11055 H05606 ZNF291 zinc finger protein 291 22 0.041 0.511 193 GC18699 AA035404 ATP5G3 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c (subunit 9) isoform 3 22 0.021 0.51 194 GC17513 W95001 CDC25C cell division cycle 25C 22 0.022 0.51 195 GC10016 AA057205 LOC116143 hypothetical protein BC014022 22 0.072 0.509 196 GC12261 R28259 CEP1 centrosomal protein 1 22 0.047 0.509 197 GC18016 AA005158 KIAA0648 KIAA0648 protein 22 0.029 0.509 198 GC17600 W84808 PTPN2 protein tyrosine phosphatase, non-receptor type 2 22 0.039 0.509 199 GC13848 N58777 MYB v-myb myeloblastosis viral oncogene homolog (avian) 22 0.023 0.508 200 GC16999 AA026370 SUSP1 SUMO-1-specific protease 22 0.026 0.508