DOCSLIB.ORG

Imaging Human EEG Dynamics Using Independent Component Analysis

Total Page：16

File Type：pdf, Size：1020Kb

Download full-text PDF Read full-text
Imaging Human EEG Dynamics Using Independent Component Analysis ARTICLE IN PRESS Neuroscience and Biobehavioral Reviews 30 (2006) 808–822 www.elsevier.com/locate/neubiorev Review Imaging human EEG dynamics using independent component analysis Julie Ontona, Marissa Westerfieldb, Jeanne Townsendb, Scott Makeiga,Ã aSwartz Center for Computational Neuroscience, Institute for Neural Computation, University of California San Diego, La Jolla, CA 92093-0961, USA bDepartment of Neurosciences, University of California San Diego, La Jolla, CA 92093, USA Abstract This review discusses the theory and practical application of independent component analysis (ICA) to multi-channel EEG data. We use examples from an audiovisual attention-shifting task performed by young and old subjects to illustrate the power of ICA to resolve subtle differences between evoked responses in the two age groups. Preliminary analysis of these data using ICA suggests a loss of task specificity in independent component (IC) processes in frontal and somatomotor cortex during post-response periods in older as compared to younger subjects, trends not detected during examination of scalp-channel event-related potential (ERP) averages. We discuss possible approaches to component clustering across subjects and new ways to visualize mean and trial-by-trial variations in the data, including ERP-image plots of dynamics within and across trials as well as plots of event-related spectral perturbations in component power, phase locking, and coherence. We believe that widespread application of these and related analysis methods should bring EEG once again to the forefront of brain imaging, merging its high time and frequency resolution with enhanced cm-scale spatial resolution of its cortical sources. r 2006 Published by Elsevier Ltd. Keywords: EEG; ERP; ICA; Independent component analysis; P300; P3; Aging; Mu; Review Contents 1. Imaging human brain dynamics from multi-channel scalp electroencephalographic (EEG) recordings . 809 2. EEG sources and source independence . 810 3. Independent component analysis. 810 3.1. ICA history . 810 3.2. ICA model assumptions . 811 3.3. The ICA model . 811 3.4. Component source modeling . 812 3.5. Practical considerations . 813 3.6. ICA versus PCA . 813 3.7. Two classes of EEG artifacts . 814 4. Sample application to the study of normal aging . 814 4.1. Audiovisual attention-shifting . 814 4.2. Target-evoked response differences in younger and older adults . 814 4.3. ICA decomposition . 815 4.4. Component clustering . 816 4.5. ERPs and component clusters . 817 4.6. Event-related rhythmicity. 819 4.7. Statistics on component clusters . 819 ÃCorresponding author. E-mail address: [email protected] (S. Makeig). 0149-7634/$ - see front matter r 2006 Published by Elsevier Ltd. doi:10.1016/j.neubiorev.2006.06.007 ARTICLE IN PRESS J. Onton et al. / Neuroscience and Biobehavioral Reviews 30 (2006) 808–822 809 5. Further challenges . 819 5.1. Component clustering methods . 819 5.2. Time/frequency modeling. 820 5.3. Trial-to-trial variability . 820 5.4. Component statistics . 820 6. Functional electromagnetic brain imaging . 821 Acknowledgments . 821 References . 821 1. Imaging human brain dynamics from multi-channel scalp whole data. While the spatial resolution of EEG imaging electroencephalographic (EEG) recordings has in the past been considered to be poor in all three of these aspects, we believe that new techniques for EEG Even a brief glance at multi-channel EEG data shows analysis including those discussed in this review signifi- that nearby scalp channels record highly correlated signals. cantly improve its spatial resolution by all definirions of the Why? Because EEG signals are not produced in the scalp term. or the brain directly under the recording electrodes. The recovery of the exact cortical distribution of an EEG Rather, they are generated by partial synchrony of local source region is limited by the undercompleteness of the field potentials in many distinct cortical domains—each inverse source localization problem. For example, far-field domain being, in the simplest case, a patch of cortex of potentials from two synchronously active but physically unknown extent. The radial orientation of pyramidal cells opposing cortical source areas—e.g., source areas facing relative to the cortical surface within such a domain allows each other on opposite sides of a cortical sulcus—may summation of temporally synchronous extra-neuronal cancel, and their joint activity will have no effect on the potentials whose summed ‘far-field’ potentials project to scalp data. If a third area is coherently active, there will be the scalp electrodes near instantly through passive volume no way to determine from scalp recordings whether the conduction. In the absence of such local area synchrony observed activity arises within the third area alone, within and near parallel orientations of neighboring pyramidal all three areas synchronously, or in any other combination neurons, local field activities would partially or completely of partially self-canceling source areas whose summed cancel each other out, thus preventing far-field potentials activity at the scalp also matches or closely resembles that of sufficient strength to be detected at scalp electrodes. By of the third area alone. the basic laws of electrical conductance, far-field potentials The inverse source localization problem may be greatly generated within all cortical (and non-brain) domains simplified by relying on the well-accepted assumptions that project to and sum linearly at nearly every scalp electrode. EEG signals arise from cortical pyramidal cells oriented Thus, EEG data recorded at a single electrode are a simple perpendicular to the cortical surface and (usually) located sum (or more technical, a weighted linear mixture) of within a single contiguous and therefore highly intercon- underlying cortical source signals. The weights of each nected cortical domain. It is not easy, however, to recorded mixture are determined by the distance of the separately record an EEG scalp distribution generated in cortical source domains or patches from the electrode pair only one cortical domain, since many EEG source domains (‘active’ and ‘reference’), the orientation of the cortical contribute to each recorded EEG signal at nearly all time patch relative to the electrode pair locations, and the points. The common method of response averaging, electrical properties of intervening tissues (cortex, cerebral- producing event-related potential (ERP) average time spinal fluid, skull, and skin). courses time-locked to a set of similar stimulus onsets or This spatial mixing of EEG source signals by volume other events, was originally thought to produce EEG scalp conduction produces the strong correlations observed distributions in which only a few source areas—hopefully between EEG recordings at nearby electrodes and is the no more than one—were active at a time. However, in reason why EEG, the first developed and still the most practice such hopes were not realized, since very soon after sensitive and dynamic non-invasive brain imaging mod- the earliest sensory signals reach the cortex, sensory ality, has long been denigrated as having ‘poor spatial information begins to reach and perturb ongoing field resolution.’ The term ‘spatial resolution’ has several potential activities within many brain areas (Hupe et al., meanings, however, and the actual degree of spatial 2001; Klopp et al., 2000). A more ideal goal for EEG resolution of EEG depends on the intended sense of the analysis should be to detect and separate activities in term ‘resolution’. For any signal modality, three separable multiple concurrently active EEG source areas, regardless meanings of the term ‘spatial resolution’ are the degree to of their relative strengths at different moments. which the exact location of a single source may be Recently, a new approach to finding EEG source accurately determined; the spatial separation between two activities has been developed (Makeig et al., 1996) based sources that is necessary to separate their signals; and the on a simple physiological assumption that across sufficient number of such sources that can be separated from the time, the EEG signals arising in different cortical source ARTICLE IN PRESS 810 J. Onton et al. / Neuroscience and Biobehavioral Reviews 30 (2006) 808–822 domains are near temporally independent of each other. effective EEG source. In either case, EEG scalp signals This means that measuring the scalp EEG activity may be modeled as the sum of distinct, phase-independent, produced in some of the source domains at a given and spatially stationary signals from cortical patches (or moment allows no inferences about EEG activities in the coupled patch pairs). A third major category of EEG signal other source domains at the same instant. As we shall see, sources are non-brain artifact sources including the eyes, this assumption is sufficient to separate signals from both scalp muscles, defective or poorly attached electrodes, and physically distant and adjacent EEG source areas—if their ambient line noise, whose volume-conducted activities are contributions to the scalp EEG are largely independent also summed in EEG recordings. over time. This insight and the resulting algorithms for While sufficiently dense multi-scale recordings of macro- signal separation that have emerged in the last decade have scopic field activity in cortex are still lacking, the created a new field within signal processing in general— physiological plausibility and heuristic accuracy, at least,
Load more

Recommended publications
  • Auditory P3a and P3b Neural Generators in Schizophrenia: an Adaptive Sloreta P300 Localization Approach
    View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by UPCommons. Portal del coneixement obert de la UPC This is an author-edited version of the accepted manuscript published in Schizophrenia Research. The final publication is available at Elsevier via http://dx.doi.org/10.1016/j.schres.2015.09.028 Auditory P3a and P3b neural generators in schizophrenia: An adaptive sLORETA P300 localization approach Alejandro Bachiller1, Sergio Romero2,3, Vicente Molina4,5, Joan F. Alonso2,3, Miguel A. Mañanas2,3, Jesús Poza1,5,6 and Roberto Hornero1,6 1 Biomedical Engineering Group, E.T.S. Ingenieros de Telecomunicación, Universidad de Valladolid, 47011 Valladolid, Spain. {[email protected]; [email protected]; [email protected]} 2 Department of Automatic Control (ESAII), Biomedical Engineering Research Center (CREB), Universitat Politècnica de Catalunya (UPC), 08028 Barcelona, Spain. {[email protected]; [email protected]; [email protected]} 3 CIBER de Bioingeniería, Biomateriales y Nanomedicina (CIBER-BBN) 4 Psychiatry Department, Hospital Clínico Universitario, Facultad de Medicina, Universidad de Valladolid, 47005 Valladolid, Spain {[email protected]} 5 INCYL, Instituto de Neurociencias de Castilla y León, Universidad de Salamanca, 37007 Salamanca, Spain 6 IMUVA, Instituto de Investigación en Matemáticas, Universidad de Valladolid, 47011 Valladolid, Spain Corresponding author. Alejandro Bachiller, Biomedical Engineering Group, E.T.S. Ingenieros de Telecomunicación, Universidad de Valladolid, 47011 Valladolid, Spain Tel: +34 983423000 ext. 5589; fax: +34 983423667; Email address: [email protected] Abstract The present study investigates the neural substrates underlying cognitive processing in schizophrenia (Sz) patients.
    [Show full text]
  • Low- and High-Frequency Cortical Brain Oscillations Reflect Dissociable Mechanisms of Concurrent Speech Segregation in Noise
    Hearing Research 361 (2018) 92e102 Contents lists available at ScienceDirect Hearing Research journal homepage: www.elsevier.com/locate/heares Low- and high-frequency cortical brain oscillations reflect dissociable mechanisms of concurrent speech segregation in noise * Anusha Yellamsetty a, Gavin M. Bidelman a, b, c, a School of Communication Sciences & Disorders, University of Memphis, Memphis, TN, USA b Institute for Intelligent Systems, University of Memphis, Memphis, TN, USA c Univeristy of Tennessee Health Sciences Center, Department of Anatomy and Neurobiology, Memphis, TN, USA article info abstract Article history: Parsing simultaneous speech requires listeners use pitch-guided segregation which can be affected by Received 24 May 2017 the signal-to-noise ratio (SNR) in the auditory scene. The interaction of these two cues may occur at Received in revised form multiple levels within the cortex. The aims of the current study were to assess the correspondence 9 December 2017 between oscillatory brain rhythms and determine how listeners exploit pitch and SNR cues to suc- Accepted 12 January 2018 cessfully segregate concurrent speech. We recorded electrical brain activity while participants heard Available online 2 February 2018 double-vowel stimuli whose fundamental frequencies (F0s) differed by zero or four semitones (STs) presented in either clean or noise-degraded (þ5 dB SNR) conditions. We found that behavioral identi- Keywords: fi fi EEG cation was more accurate for vowel mixtures with larger pitch separations but F0 bene t interacted Time-frequency analysis with noise. Time-frequency analysis decomposed the EEG into different spectrotemporal frequency Double-vowel segregation bands. Low-frequency (q, b) responses were elevated when speech did not contain pitch cues (0ST > 4ST) F0-benefit or was noisy, suggesting a correlate of increased listening effort and/or memory demands.
    [Show full text]
  • Event-Related Delta, Theta, Alpha and Gamma Correlates to Auditory Oddball Processing During Vipassana Meditation
    doi:10.1093/scan/nss060 SCAN (2013) 8,100^111 Event-related delta, theta, alpha and gamma correlates to auditory oddball processing during Vipassana meditation B. Rael Cahn,1,2,3 Arnaud Delorme,3,4,5 and John Polich2 1Department of Psychiatry, University of California, Irvine, Irvine, 2Molecular and Integrative Neurosciences Department, The Scripps Research Institute, La Jolla, CA,USA, 3Meditation Research Institute, Rishikesh, Uttarakhand, India, 4Institute of Neural Computation, University of California, San Diego, La Jolla, CA, USA 5CERCO, CNRS, Universite´ Paul Sabatier, Toulouse, France Long-term Vipassana meditators sat in meditation vs. a control (instructed mind wandering) states for 25 min, electroencephalography (EEG) was recorded and condition order counterbalanced. For the last 4 min, a three-stimulus auditory oddball series was presented during both meditation and control periods through headphones and no task imposed. Time-frequency analysis demonstrated that meditation relative to the control condition evinced decreased evoked delta (2–4 Hz) power to distracter stimuli concomitantly with a greater event-related reduction of late (500–900 ms) alpha-1 (8–10 Hz) activity, which indexed altered dynamics of attentional engagement to distracters. Additionally, standard stimuli were associated with Downloaded from increased early event-related alpha phase synchrony (inter-trial coherence) and evoked theta (4–8 Hz) phase synchrony, suggesting enhanced processing of the habituated standard background stimuli. Finally, during meditation, there was a greater differential early-evoked gamma power to the different stimulus classes. Correlation analysis indicated that this effect stemmed from a meditation state-related increase in early distracter-evoked gamma power and phase synchrony specific to longer-term expert practitioners.
    [Show full text]
  • MATLAB-Based Tools for BCI Research
    In: (B+H)CI: The Human in Brain-Computer Interfaces and the Brain in Human- Computer Interaction. Desney S Tan, Anton Nijholt (eds.) MATLAB-Based Tools for BCI Research Arnaud Delorme1,2,3, Christian Kothe4, Andrey Vankov1, Nima Bigdely-Shamlo1, Robert Oostenveld5, Thorsten Zander4, Scott Makeig1 [email protected], [email protected], [email protected], [email protected], [email protected], [email protected] berlin.de, [email protected] 1. Swartz Center for Computational Neuroscience, Institute for Neural Computation, University of California San Diego, La Jolla CA, USA 2. Université de Toulouse, UPS, Centre de Recherche Cerveau et Cognition, Toulouse, France 3. CNRS, CerCo, Toulouse, France 4. Department of Psychology and Ergonomics, Chair Human-Machine Systems, Berlin Institute of Technology, Berlin, Germany 5. Donders Institute for Brain, Cognition and Behaviour, Radboud University Nijmegen, Nijmegen, The Netherlands Abstract We first review the range of standalone and MATLAB-based software currently freely available to BCI researchers. We then discuss two MATLAB-centered solutions for realtime data streaming, the environments FieldTrip (Donders Institute, Nijmegen) and DataSuite (DataRiver, Producer, MatRiver) (Swartz Center, La Jolla). We illustrate the relative simplicity of coding BCI feature extraction and classification under MATLAB (The Mathworks, Inc.) using a minimalist BCI example, and then describe BCILAB (Team PhyPa, Berlin), a new BCI package that uses the data structures and extends the capabilities of the widely used EEGLAB signal processing environment. 2 Introduction Brain Computer Interface (BCI) systems and algorithms allow the use of brain signals as volitional communication devices or more generally create some sort of useful interconnection between the operation of a machine system and the brain activity of a human or animal subject using, engaged with, or monitored by the system.
    [Show full text]
  • Using EEG Data to Predict Engagement in Face-To-Face Conversations
    Edith Cowan University Research Online Theses : Honours Theses 2018 Using EEG data to predict engagement in face-to-face conversations Brooke Maddestra Edith Cowan University Follow this and additional works at: https://ro.ecu.edu.au/theses_hons Part of the Psychology Commons Recommended Citation Maddestra, B. (2018). Using EEG data to predict engagement in face-to-face conversations. https://ro.ecu.edu.au/theses_hons/1508 This Thesis is posted at Research Online. https://ro.ecu.edu.au/theses_hons/1508 Edith Cowan University Copyright Warning You may print or download ONE copy of this document for the purpose of your own research or study. The University does not authorize you to copy, communicate or otherwise make available electronically to any other person any copyright material contained on this site. Youe ar reminded of the following: Copyright owners are entitled to take legal action against persons who infringe their copyright. A reproduction of material that is protected by copyright may be a copyright infringement. Where the reproduction of such material is done without attribution of authorship, with false attribution of authorship or the authorship is treated in a derogatory manner, this may be a breach of the author’s moral rights contained in Part IX of the Copyright Act 1968 (Cth). Courts have the power to impose a wide range of civil and criminal sanctions for infringement of copyright, infringement of moral rights and other offences under the Copyright Act 1968 (Cth). Higher penalties may apply, and higher damages may be awarded, for offences and infringements involving the conversion of material into digital or electronic form.
    [Show full text]
  • Electroencephalography (EEG)
    Electroencephalography 1 Electroencephalography Electroencephalography (EEG) is the recording of electrical activity along the scalp produced by the firing of neurons within the brain.[2] In clinical contexts, EEG refers to the recording of the brain's spontaneous electrical activity over a short period of time, usually 20–40 minutes, as recorded from multiple electrodes placed on the scalp. In neurology, the main diagnostic application of EEG is in the case of epilepsy, as epileptic activity can create clear abnormalities on a standard EEG study.[3] A secondary clinical use of EEG is in the diagnosis of coma, encephalopathies, and brain death. EEG used to be a first-line method for the diagnosis of tumors, stroke and other focal brain disorders, but this use has decreased with the advent of anatomical imaging techniques such as MRI and CT. Derivatives of the EEG technique include evoked potentials (EP), which involves averaging the EEG activity time-locked to the presentation of a stimulus of some sort (visual, somatosensory, or auditory). Event-related potentials refer to averaged EEG responses An EEG recording net (Electrical Geodesics, that are time-locked to more complex processing of stimuli; this [1] Inc. ) being used on a participant in a brain technique is used in cognitive science, cognitive psychology, and wave study. psychophysiological research. Source of EEG activity The electrical activity of the brain can be described in spatial scales from the currents within a single dendritic spine to the relatively gross potentials that the EEG records from the scalp, much the same way that economics can be studied from the level of a single individual's personal finances to the macro-economics of nations.
    [Show full text]
  • AUTOMAGIC: Standardized Preprocessing of Big EEG Data
    bioRxiv preprint doi: https://doi.org/10.1101/460469; this version posted November 4, 2018. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC 4.0 International license. Running head: Automagic 0 AUTOMAGIC: Standardized Preprocessing of Big EEG Data 1 1 1 Andreas Pedroni ,​ Amirreza Bahreini ,​ Nicolas Langer ​ ​ ​ Methods for Plasticity Research, Psychological Institute, University of Zurich bioRxiv preprint doi: https://doi.org/10.1101/460469; this version posted November 4, 2018. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC 4.0 International license. AUTOMAGIC 1. Abstract Electroencephalography (EEG) recordings have been rarely included in large-scale neuropsychiatric biomarker studies. This is arguably not due to a lack of information that lies in EEG recordings but mainly on account of methodological issues. In many cases, particularly in clinical or pediatric populations, the EEG has a high degree of artifact contamination and the quality of EEG recordings often substantially differs between subjects. Although there exist a variety of standardized preprocessing methods to clean EEG from artifacts, currently there is no method to objectively quantify the quality of preprocessed EEG. This makes the commonly accepted procedure of excluding subjects from analyses due to exceeding contamination of artifacts highly subjective. As a consequence, P-hacking is fostered, the replicability of results is decreased, and it is difficult to compare data from different study sites.
    [Show full text]
  • Mismatch Negativity Reveals Plasticity in Cortical Dynamics After 1-Hour of Auditory Training Exercises ⁎ Veronica B
    International Journal of Psychophysiology xxx (xxxx) xxx–xxx Contents lists available at ScienceDirect International Journal of Psychophysiology journal homepage: www.elsevier.com/locate/ijpsycho Mismatch negativity reveals plasticity in cortical dynamics after 1-hour of auditory training exercises ⁎ Veronica B. Pereza,b,c, Makoto Miyakoshid, Scott D. Makeigd, Gregory A. Lighta,b, a VA Desert Pacific Mental Illness Research, Education and Clinical Center (MIRECC), VA San Diego Healthcare System, San Diego, CA,UnitedStates b Department of Psychiatry, University of California San Diego, La Jolla, CA, United States c Department of Psychology, California School of Professional Psychology, Alliant International University, San Diego, CA, United States d Swartz Center for Computational Neuroscience, Institute for Neural Computation, University of California San Diego, United States ARTICLE INFO ABSTRACT Keywords: Background: Impaired sensory processing contributes to deficits in cognitive and psychosocial functioning in Mismatch negativity individuals with schizophrenia (SZ). Mismatch Negativity (MMN), an event-related potential (ERP) index of Biomarker sensory discrimination associated with cognitive and psychosocial functioning, is a candidate biomarker of Psychosis auditory discrimination and thus possibly of changes following auditory-based Targeted Cognitive Training Training (TCT). Here we evaluated the acute effect of TCT on cortical processes supporting auditory discrimination. Cognition Methods: MMN was assessed in 28 SZ outpatients before and after a single 1-hour (hr) session of “Sound Treatment Sweeps,” a pitch discrimination task that is a component of the TCT suite of exercises. Independent component (IC) analysis was applied to decompose 64-channel scalp-recorded electroencephalogram (EEG) activity into spatiotemporally stationary sources and their activities. ICs from all patients were pooled to find commonalities in their cortical locations.
    [Show full text]
  • Mining Electroencephalographic Data Using Independent Component Analysis
    DRAFT OF INVITED REVIEW, SUBMITTED TO CLIN NEUROPHYSIOL 6/05 Mining Electroencephalographic Data Using Independent Component Analysis Tzyy-Ping Jung and Scott Makeig Swartz Center for Computational Neuroscience Institute for Neural Computation University of California, San Diego La Jolla, CA 92093-0961, U.S.A. {jung,scott}@sccn.ucsd.edu Corresponding author: Tzyy-Ping Jung, Ph.D. Swartz Center for Computational Neuroscience Institute for Neural Computation University of California, San Diego 9500 Gilman Dr. DEPT 0961 La Jolla, Ca 92093-0961 Tel: 858-458-1927x12 Fax: 858-458-1847 E-mail: [email protected] Running Title: Mining EEG Data using ICA Keywords: Blind source separation; Independent Component Analysis; ICA; ERP; Single-trial ERP; artifact removal; Event-related Brain Dynamics; Source localization Number of words in the abstract: 250 Number of pages text pages: 58 (including acknowledgments and references) Number of figures: 8 Number of tables: 0 1 DRAFT OF INVITED REVIEW, SUBMITTED TO CLIN NEUROPHYSIOL 6/05 ABSTRACT (250 words) Long dominated by event-related potential (ERP) averaging methods, current electroencephalographic (EEG) research is beginning to make use of modern signal processing advances including time/frequency analysis, 3-D and animated visualization, source localization onto magnetic resonance images of the head, and independent component analysis (ICA) applied to collections of unaveraged continuous or single-trial event-related data. Research in our own and many other laboratories over the last decade has shown that much valuable information about human brain dynamics contained in event-related EEG data may be revealed by these new methods. New insights about brain function beginning to emerge from this research would have been difficult or impossible to obtain without first separating and identifying distinct brain processes contained in the data.
    [Show full text]
  • Software and Resources for Experiments and Data Analysis of MEG and EEG Data
    Software and resources for experiments and data analysis of MEG and EEG data Data from magnetoencephalography (MEG) and electroencephalography (EEG) is extremely rich and multifaceted. For example, in a standard MEG recording with 306 sensors and a sampling rate of 1,000 Hz, 306,000 data points are sampled every second. To be able to answer the question, which was the ultimate reason for acquiring the data, thus necessitates efficient data handling. Luckily, several software packages have been developed for handling MEG and/or EEG data. To name some of the most popular: MNE- Python; FieldTrip; Brainstorm; EEGLAB and SPM. These are all available under a public domain licence, meaning that they can be run, shared and modified by anyone. Commercial software released under proprietary licences include BESA and CURRY. It is important to be aware of that for clinical diagnosis of for example epilepsy, certified software is required FieldTrip, MNE-Python, Brainstorm, EEGLAB and SPM for example cannot be used for that. In this chapter, the emphasis will be on MNE-Python and FieldTrip. This will allow users of both Python and MATLAB (or alternatively GNU Octave to code along as the chapter unfolds. As a general remark, all that MNE-Python can do, FieldTrip can do and vice versa – though with some small difference. A full analysis going from raw data to a source reconstruction will be presented, illustrated with both code and figures with the aim of providing newcomers to the field a stepping stone towards doing their own analyses of their own datasets. PeerJ Preprints | https://doi.org/10.7287/peerj.preprints.27988v2 | CC BY 4.0 Open Access | rec: 21 Oct 2019, publ: 21 Oct 2019 1 Software and resources for experiments and data analysis of MEG and EEG data 2 3 Lau M.
    [Show full text]
  • Real-Time Tracking of Motor Response Activation and Response Competition in a Stroop Task in Young Children: a Lateralized Readiness Potential Study
    Real-time Tracking of Motor Response Activation and Response Competition in a Stroop Task in Young Children: A Lateralized Readiness Potential Study Dénes Szűcs1,2, Fruzsina Soltész1, Donna Bryce1, 1 and David Whitebread Downloaded from http://mitprc.silverchair.com/jocn/article-pdf/21/11/2195/1759865/jocn.2009.21220.pdf by guest on 18 May 2021 Abstract ■ The ability to select an appropriate motor response by resol- mals, presented simultaneously on the computer screen, which ving competition among alternative responses plays a major was larger in real life. In the incongruent condition, the LRP de- role in cognitive performance. fMRI studies suggest that the de- tected stronger and longer lasting incorrect response activation velopment of this skill is related to the maturation of the frontal in children than in adults. LRP results could explain behavioral cortex that underlies the improvement of motor inhibition abili- congruency effects, the generally longer RT in children than in ties. However, fMRI cannot characterize the temporal proper- adults and the larger congruency effect in children than in ties of motor response competition and motor activation in adults. In contrast, the peak latency of ERP waves, usually asso- general. We studied the development of the time course of re- ciated with stimulus processing speed, could explain neither of solving motor response competition. To this end, we used the the above effects. We conclude that the development of resol- lateralized readiness potential (LRP), an ERP measure, for track- ving motor response competition, relying on motor inhibition ing correct and incorrect motor cortex activation in children skills, is a crucial factor in child development.
    [Show full text]
  • Electroencephalographic Brain Dynamics Following Visual Targets Requiring Manual Responses
    PLoS BIOLOGY Electroencephalographic Brain Dynamics Following Manually Responded Visual Targets Scott Makeig1*, Arnaud Delorme1, Marissa Westerfield2, Tzyy-Ping Jung1, Jeanne Townsend2, Eric Courchesne2,3, Terrence J. Sejnowski1,4 1 Swartz Center for Computational Neuroscience, Institute for Neural Computation, University of California at San Diego, La Jolla, California, United States of America, 2 Department of Neurosciences, University of California at San Diego, La Jolla, California, United States of America, 3 Children’s Hospital Research Center, San Diego, California, United States of America, 4 Howard Hughes Medical Institute, Computational Neurobiology Laboratory, Salk Institute for Biological Studies, La Jolla, California, United States of America Scalp-recorded electroencephalographic (EEG) signals produced by partial synchronization of cortical field activity mix locally synchronous electrical activities of many cortical areas. Analysis of event-related EEG signals typically assumes that poststimulus potentials emerge out of a flat baseline. Signals associated with a particular type of cognitive event are then assessed by averaging data from each scalp channel across trials, producing averaged event-related potentials (ERPs). ERP averaging, however, filters out much of the information about cortical dynamics available in the unaveraged data trials. Here, we studied the dynamics of cortical electrical activity while subjects detected and manually responded to visual targets, viewing signals retained in ERP averages not as responses of an otherwise silent system but as resulting from event-related alterations in ongoing EEG processes. We applied infomax independent component analysis to parse the dynamics of the unaveraged 31-channel EEG signals into maximally independent processes, then clustered the resulting processes across subjects by similarities in their scalp maps and activity power spectra, identifying nine classes of EEG processes with distinct spatial distributions and event-related dynamics.
    [Show full text]