Basic Research Needs: Catalysis for Energy
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Enzyme Activity and Assays Introductory Article
Enzyme Activity and Assays Introductory article Robert K Scopes, La Trobe University, Bundoora, Victoria, Australia Article Contents . Factors that Affect Enzymatic Analysis Enzyme activity refers to the general catalytic properties of an enzyme, and enzyme assays . Initial Rates and Steady State Turnover are standardized procedures for measuring the amounts of specific enzymes in a sample. Measurement of Enzyme Activity . Measurement of Protein Concentration Factors that Affect Enzymatic Analysis . Methods for Purifying Enzymes . Summary Enzyme activity is measured in vitro under conditions that often do not closely resemble those in vivo. The objective of measuring enzyme activity is normally to determine the exactly what the concentration is (some preparations of amount of enzyme present under defined conditions, so unusual substrates may be impure, or the exact amount that activity can be compared between one sample and present may not be known). This is because the rate another, and between one laboratory and another. The measured varies with substrate concentration more rapidly conditions chosen are usually at the optimum pH, as the substrate concentration decreases, as can be seen in ‘saturating’ substrate concentrations, and at a temperature Figure 1. In most cases an enzyme assay has already been that is convenient to control. In many cases the activity is established, and the substrate concentration, buffers and measured in the opposite direction to that of the enzyme’s other parameters used previously should be used again. natural function. Nevertheless, with a complete study of There are many enzymes which do not obey the simple the parameters that affect enzyme activity it should be Michaelis–Menten formula. -
Zn-Al Mixed Oxides Decorated with Potassium As Catalysts for HT-WGS: Preparation and Properties
catalysts Article Zn-Al Mixed Oxides Decorated with Potassium as Catalysts for HT-WGS: Preparation and Properties Katarzyna Antoniak-Jurak * , Paweł Kowalik, Kamila Michalska, Wiesław Próchniak and Robert Bicki Łukasiewicz Research Network—New Chemical Syntheses Institute, Al. Tysi ˛acleciaPa´nstwa Polskiego 13A, 24-110 Puławy, Poland; [email protected] (P.K.); [email protected] (K.M.); [email protected] (W.P.); [email protected] (R.B.) * Correspondence: [email protected]; Tel.: +48-8-1473-1754 Received: 8 September 2020; Accepted: 18 September 2020; Published: 21 September 2020 Abstract: A set of ex-ZnAl-LDHs catalysts with a molar ratio of Zn/Al in the range of 0.3–1.0 was prepared using co-precipitation and thermal treatment. The samples were characterized using various methods, including X-ray fluorescence spectroscopy (XRF), X-ray photoelectron spectroscopy (XPS), X-ray powder diffraction (XRD), Fourier transform infrared spectroscopy FT-IR, N2 adsorption, Temperature-programmed desorption of CO2 (TPD-CO2) as well as Scanning electron microscopy (SEM-EDS). Catalyst activity and long-term stability measurements were carried out in a high-temperature water–gas shift (HT-WGS) reaction. Mixed oxide catalysts with various Zn/Al molar ratios decorated with potassium showed high activity in the HT-WGS reaction within the temperature range of 330–400 ◦C. The highest activity was found for the Zn/Al molar ratio of 0.5 corresponding to spinel stoichiometry. However, the catalyst with a stoichiometric spinel molar ratio of Zn/Al (ZnAl_0.5_K) revealed a higher tendency for surface migration and/or vaporization of potassium during overheating at 450 ◦C. -
Types of Chemical Reactions and Solution Stoichiometry
Types of Chemical Reactions 4 and Solution Stoichiometry Contents 4.1 Water, the Common Solvent 4.2 The Nature of Aqueous Solutions: Strong and Weak Electrolytes • Strong Electrolytes • Weak Electrolytes • Nonelectrolytes 4.3 The Composition of Solutions • Dilution 4.4 Types of Chemical Reactions 4.5 Precipitation Reactions 4.6 Describing Reactions in Solution 4.7 Stoichiometry of Precipitation Reactions 4.8 Acid–Base Reactions • Acid–Base Titrations 4.9 Oxidation–Reduction Reactions • Oxidation States • The Characteristics of Oxidation–Reduction Reactions 4.10 Balancing Oxidation– Reduction Equations • The Half-Reaction Method for Balancing Oxidation–Reduction Reactions in Aqueous Solutions Yellow lead(II) iodide is produced when lead(II) nitrate is mixed with potassium iodide. 126 Much of the chemistry that affects each of us occurs among substances dissolved in water. For example, virtually all the chemistry that makes life possible occurs in an aqueous environment. Also, various medical tests involve aqueous reactions, depending heavily on analyses of blood and other body fluids. In addition to the common tests for sugar, cholesterol, and iron, analyses for specific chemical markers allow detection of many diseases before obvious symptoms occur. Aqueous chemistry is also important in our environment. In recent years, contami- nation of the groundwater by substances such as chloroform and nitrates has been widely publicized. Water is essential for life, and the maintenance of an ample supply of clean water is crucial to all civilization. To understand the chemistry that occurs in such diverse places as the human body, the atmosphere, the groundwater, the oceans, the local water treatment plant, your hair as you shampoo it, and so on, we must understand how substances dissolved in water react with each other. -
Chapter 17: Electrochemistry
4/12/2021 17.1 Electrochemistry Chapter 17: Deals with chemical reactions that produce electricity and the changes associated Electrochemistry with the passage of charge through matter. Reactions involve electron transfer – oxidation/reduction (redox) Example: A typical AA alkaline battery is rated at 1.5 V. This means the electrical potential difference between the +/– terminals is 1.5 V. It is the chemical reactions in the battery that give rise to this difference. 1 2 1 2 Redox Recap Assigning oxidation numbers Oxidation number rules: 1.) Ox. # = 0 for an atom in pure, elemental state 2+ 2.) Ox. # = <charge> for monatomic ion: Ox. # = 2 for Ca Oxidation number: +1 –1 3.) Sum of all Ox. #’s for atoms in polyatomic ion = charge on polyatomic ion Total contribution to charge: +2 –2 = 0 4.) Sum of all Ox. #’s = charge on species: H2O Ox.(H) = 1, Ox(O) = –2 Oxidation number: +1 +6 –2 Total contribution to charge: +2 +6 –8 = 0 3 4 3 4 1 4/12/2021 Redox terminology Redox terminology applied Oxidation – the loss of electrons OIL RIG – “oxidation is losing, Reduction – the gain of electrons reduction is gaining” 0 +2 –1 +2 –1 0 “Substance X undergoes oxidation.” – X lost electrons 0 +2 –2 +2 –2 0 “Substance Y was reduced.” – Y gained electrons Oxidizing agent – the species that undergoes reduction What was oxidized? Zn Oxidizing agent = CuCl2 Reducing agent – the species that undergoes oxidation What was reduced? Cu2+ Reducing agent = Zn “Substance Z is the oxidizing agent.” – Z gains electrons What is the spectator ion? Cl– (Think: Travel agent – allows someone else to travel) 5 6 5 6 17.1 Balancing redox reactions Example: Balancing redox reaction in acidic solution 1.) Assign oxidation states to all atoms. -
Opportunities for Catalysis in the 21St Century
Opportunities for Catalysis in The 21st Century A Report from the Basic Energy Sciences Advisory Committee BASIC ENERGY SCIENCES ADVISORY COMMITTEE SUBPANEL WORKSHOP REPORT Opportunities for Catalysis in the 21st Century May 14-16, 2002 Workshop Chair Professor J. M. White University of Texas Writing Group Chair Professor John Bercaw California Institute of Technology This page is intentionally left blank. Contents Executive Summary........................................................................................... v A Grand Challenge....................................................................................................... v The Present Opportunity .............................................................................................. v The Importance of Catalysis Science to DOE.............................................................. vi A Recommendation for Increased Federal Investment in Catalysis Research............. vi I. Introduction................................................................................................ 1 A. Background, Structure, and Organization of the Workshop .................................. 1 B. Recent Advances in Experimental and Theoretical Methods ................................ 1 C. The Grand Challenge ............................................................................................. 2 D. Enabling Approaches for Progress in Catalysis ..................................................... 3 E. Consensus Observations and Recommendations.................................................. -
Interstellar Formamide (NH2CHO), a Key Prebiotic Precursor
Interstellar formamide (NH2CHO), a key prebiotic precursor Ana López-Sepulcre,∗,y,z Nadia Balucani,{ Cecilia Ceccarelli,y Claudio Codella,x,y François Dulieu,k and Patrice Theulé? yUniv. Grenoble Alpes, IPAG, F-38000 Grenoble, France zInstitut de Radioastronomie Millimétrique (IRAM), 300 rue de la piscine, F-38406 Saint-Martin d’Hères, France {Dipartimento di Chimica, Biologia e Biotecnologie, Università degli Studi di Perugia, I-06123 Perugia, Italy xINAF, Osservatorio Astrofisico di Arcetri, Largo E. Fermi 5, I-50125, Firenze, Italy kUniversité de Cergy-Pontoise, Observatoire de Paris, PSL University, Sorbonne Université, CNRS, LERMA, F-95000, Cergy-Pontoise, France ?Aix-Marseille Université, PIIM UMR-CNRS 7345, 13397 Marseille, France E-mail: [email protected] Abstract Formamide (NH2CHO) has been identified as a potential precursor of a wide variety arXiv:1909.11770v1 [astro-ph.SR] 25 Sep 2019 of organic compounds essential to life, and many biochemical studies propose it likely played a crucial role in the context of the origin of life on our planet. The detection of formamide in comets, which are believed to have –at least partially– inherited their current chemical composition during the birth of the Solar System, raises the question whether a non-negligible amount of formamide may have been exogenously delivered onto a very young Earth about four billion years ago. A crucial part of the effort to 1 answer this question involves searching for formamide in regions where stars and planets are forming today in our Galaxy, as this can shed light on its formation, survival, and chemical re-processing along the different evolutionary phases leading to a star and planetary system like our own. -
1 Refinery and Petrochemical Processes
3 1 Refinery and Petrochemical Processes 1.1 Introduction The combination of high demand for electric cars and higher automobile engine effi- ciency in the future will mean less conversion of petroleum into fuels. However, the demand for petrochemicals is forecast to rise due to the increase in world popula- tion. With this, it is expected that modern and more innovative technologies will be developed to serve the growth of the petrochemical market. In a refinery process, petroleum is converted into petroleum intermediate prod- ucts, including gases, light/heavy naphtha, kerosene, diesel, light gas oil, heavy gas oil, and residue. From these intermediate refinery product streams, several fuels such as fuel gas, liquefied petroleum gas, gasoline, jet fuel, kerosene, auto diesel, and other heavy products such as lubricants, bunker oil, asphalt, and coke are obtained. In addition, these petroleum intermediates can be further processed and separated into products for petrochemical applications. In this chapter, petroleum will be introduced first. Petrochemicals will be intro- duced in the second part of the chapter. Petrochemicals – the main subject of this book – will address three major areas, (i) the production of the seven cornerstone petrochemicals: methane and synthesis gas, ethylene, propylene, butene, benzene, toluene, and xylenes; (ii) the uses of the seven cornerstone petrochemicals, and (iii) the technology to separate petrochemicals into individual components. 1.2 Petroleum Petroleum is derived from the Latin words “petra” and “oleum,” which means “rock” and “oil,” respectively. Petroleum also is known as crude oil or fossil fuel. It is a thick, flammable, yellow-to-black mixture of gaseous, liquid, and solid hydrocarbons formed from the remains of plants and animals. -
Dehydrogenation by Heterogeneous Catalysts
Dehydrogenation by Heterogeneous Catalysts Daniel E. Resasco School of Chemical Engineering and Materials Science University of Oklahoma Encyclopedia of Catalysis January, 2000 1. INTRODUCTION Catalytic dehydrogenation of alkanes is an endothermic reaction, which occurs with an increase in the number of moles and can be represented by the expression Alkane ! Olefin + Hydrogen This reaction cannot be carried out thermally because it is highly unfavorable compared to the cracking of the hydrocarbon, since the C-C bond strength (about 246 kJ/mol) is much lower than that of the C-H bond (about 363 kJ/mol). However, in the presence of a suitable catalyst, dehydrogenation can be carried out with minimal C-C bond rupture. The strong C-H bond is a closed-shell σ orbital that can be activated by oxide or metal catalysts. Oxides can activate the C-H bond via hydrogen abstraction because they can form O-H bonds, which can have strengths comparable to that of the C- H bond. By contrast, metals cannot accomplish the hydrogen abstraction because the M- H bonds are much weaker than the C-H bond. However, the sum of the M-H and M-C bond strengths can exceed the C-H bond strength, making the process thermodynamically possible. In this case, the reaction is thought to proceed via a three centered transition state, which can be described as a metal atom inserting into the C-H bond. The C-H bond bridges across the metal atom until it breaks, followed by the formation of the corresponding M-H and M-C bonds.1 Therefore, dehydrogenation of alkanes can be carried out on oxides as well as on metal catalysts. -
Sustainable Catalysis
Green Process Synth 2016; 5: 231–232 Book review Sustainable catalysis DOI 10.1515/gps-2016-0016 Sustainable catalysis provides an excellent in-depth over- view of the applications of non-endangered elements in Michael North (Ed.) all aspects of catalysis from heterogeneous to homogene- Sustainable catalysis: with non-endangered metals ous, from catalyst supports to ligands. The Royal Society of Chemistry, 2015 Four volumes of the book series are divided into RSC Green Chemistry series nos. 38–41 two sub-topics devoted to (i) metal-based catalysts and Part 1 (ii) catalysts without metals or other endangered ele- Print ISBN: 978-1-78262-638-1 ments. Each sub-topic comprises of two books due to the PDF eISBN: 978-1-78262-211-6 detailed analysis of catalytic applications described. All Part 2 chapters are written by the world-leading researchers in Print ISBN: 978-1-78262-639-8 the area; however, covering far beyond the scope of their PDF eISBN: 978-1-78262-642-8 immediate research interests, which makes the book par- ticularly valuable for a wide range of readers. Sustainable catalysis: without metals or other Sustainable catalysis: with non-endangered metals endangered elements begins with a very brief chapter which describes the Part 1 concept of elemental sustainability, overviewing the Print ISBN: 978-1-78262-640-4 abundance of the critical elements and perspectives on PDF eISBN: 978-1-78262-209-3 sustainable catalysts. The chapters follow the groups of EPUB eISBN: 978-1-78262-752-4 the periodic table from left to right, from alkaline metals to Part 2 lead spanning 22 chapters. -
Systematic Approach for Chemical Reactivity
SYSTEMATIC APPROACH FOR CHEMICAL REACTIVITY EVALUATION A Dissertation by ABDULREHMAN AHMED ALDEEB Submitted to the Office of Graduate Studies of Texas A&M University in partial fulfillment of the requirements for the degree of DOCTOR OF PHILOSOPHY December 2003 Major Subject: Chemical Engineering SYSTEMATIC APPROACH FOR CHEMICAL REACTIVITY EVALUATION A Dissertation by ABDULREHMAN AHMED ALDEEB Submitted to the Office of Graduate Studies of Texas A&M University in partial fulfillment of the requirements for the degree of DOCTOR OF PHILOSOPHY Approved as to style and content by: ____________________________ ____________________________ M. Sam Mannan Kenneth R. Hall (Chair of Committee) (Member) ____________________________ ____________________________ Mark T. Holtzapple Jerald A. Caton (Member) (Member) ____________________________ Kenneth R. Hall (Head of Department) December 2003 Major Subject: Chemical Engineering iii ABSTRACT Systematic Approach for Chemical Reactivity Evaluation. (December 2003) Abdulrehman Ahmed Aldeeb, B.S., Jordan University of Science & Technology; M.S., The University of Texas at Arlington Chair of Advisory Committee: Dr. M. Sam Mannan Under certain conditions, reactive chemicals may proceed into uncontrolled chemical reaction pathways with rapid and significant increases in temperature, pressure, and/or gas evolution. Reactive chemicals have been involved in many industrial incidents, and have harmed people, property, and the environment. Evaluation of reactive chemical hazards is critical to design and operate safer chemical plant processes. Much effort is needed for experimental techniques, mainly calorimetric analysis, to measure thermal reactivity of chemical systems. Studying all the various reaction pathways experimentally however is very expensive and time consuming. Therefore, it is essential to employ simplified screening tools and other methods to reduce the number of experiments and to identify the most energetic pathways. -
'New Insights on the Selective Oxidation of Methanol to Formaldehyde on Femo Based Catalysts'
‘New Insights on the Selective Oxidation of Methanol to Formaldehyde on FeMo Based Catalysts' Catherine Brookes School of Chemistry Cardiff University Thesis for the degree of Doctor of Philosophy i This thesis was submitted for examination in August 2015. ii Abstract The selective oxidation of methanol has been studied in detail, with particular focus on gaining insights into the surface active sights responsible for directing the selectivity to formaldehyde. Various Fe and Mo containing oxides have been investigated for their reactivity with methanol, to gain an understanding of the different roles of these components in the industrial catalyst employed, which is a mixed phase comprised of MoO 3 and Fe 2(MoO 4)3. Catalysts have primarily been tested through using TPD (temperature programmed desorption) and TPPFR (temperature programmed pulsed flow reaction). The reactivity of Fe 2O3 is dominated by combustion products, with CO 2 and H 2 produced via a formate intermediate adsorbing at the catalyst surface. For MoO 3 however, the surface is populated by methoxy intermediates, so that the selectivity is almost 100 % directed to formaldehyde. When a mixture of isolated Fe and Mo sites co-exist, the surface methoxy becomes stabilised, resulting in a dehydrogenation reaction to CO and H 2. CO and CO 2 can also be observed on Mo rich surfaces, however here a consequence of the further oxidation of formaldehyde, through a linear pathway. TPD and DRIFTS identify these intermediates and products forming. Since the structure of the industrial catalyst is relatively complex, in that it contains both MoO 3 and Fe 2(MoO 4)3, it is difficult to identify the active site for the reaction with methanol. -
DNA Energy Landscapes Via Calorimetric Detection of Microstate Ensembles of Metastable Macrostates and Triplet Repeat Diseases
DNA energy landscapes via calorimetric detection of microstate ensembles of metastable macrostates and triplet repeat diseases Jens Vo¨ lkera, Horst H. Klumpb, and Kenneth J. Breslauera,c,1 aDepartment of Chemistry and Chemical Biology, Rutgers, The State University of New Jersey, 610 Taylor Rd, Piscataway, NJ 08854; bDepartment of Molecular and Cell Biology, University of Cape Town, Private Bag, Rondebosch 7800, South Africa; and cCancer Institute of New Jersey, New Brunswick, NJ 08901 Communicated by I. M. Gelfand, Rutgers, The State University of New Jersey, Piscataway, NJ, October 15, 2008 (received for review September 8, 2008) Biopolymers exhibit rough energy landscapes, thereby allowing biological role(s), if any, of kinetically stable (metastable) mi- biological processes to access a broad range of kinetic and ther- crostates that make up the time-averaged, native state ensembles modynamic states. In contrast to proteins, the energy landscapes of macroscopic nucleic acid states remains to be determined. of nucleic acids have been the subject of relatively few experimen- As part of an effort to address this deficiency, we report here tal investigations. In this study, we use calorimetric and spectro- experimental evidence for the presence of discrete microstates scopic observables to detect, resolve, and selectively enrich ener- in metastable triplet repeat bulge looped ⍀-DNAs of potential getically discrete ensembles of microstates within metastable DNA biological significance. The specific triplet repeat bulge looped structures. Our results are consistent with metastable, ‘‘native’’ ⍀-DNA species investigated mimic slipped DNA structures DNA states being composed of an ensemble of discrete and corresponding to intermediates in the processes that lead to kinetically stable microstates of differential stabilities, rather than DNA expansion in triplet repeat diseases (36).