The HKUST Institutional Repository

Total Page:16

File Type:pdf, Size:1020Kb

The HKUST Institutional Repository Publication information 7LWOH Ca2+ coding and decoding strategies for the specification of neural and renal precursor cells during development $XWKRU V Moreau, Marc; Neant, Isabelle; Webb, Sarah E.; Miller, Andrew L.; Riou, Jean-Francois; Leclerc, Catherine 6RXUFH Cell Calcium , v. 59, March 2016, p. 75-83 9HUVLRQ Pre-published version '2, https://doi.org/10.1016/j.ceca.2015.12.003 3XEOLVKHU Elsevier Copyright information © 2016 Elsevier Notice This version is available at HKUST Institutional Repository via http://hdl.handle.net/1783.1/78363 If it is the author’s pre-published version, changes introduced as a result of publishing processes such as copy-editing and formatting may not be reflected in this document. For a definitive version of this work, please refer to the published version. http://repository.ust.hk/ir/ This is the Pre-Published Version Moreau et al, review in Cell Calcium 2015 Titre : Ca2+ coding and decoding strategies for the specification of neural and renal progenitor cells during development. Authors : Marc Moreau, Isabelle Néant, Sarah E. Webb, Andrew L. Miller, Jean-François Riou, and Catherine Leclerc Corresponding author: Catherine Leclerc Introduction Calcium (Ca2+) signalling has long been reported to play a role in the early development of vertebrate embryos [1-3]. During embryogenesis, a rise in intracellular Ca2+ is known to be a widespread trigger for directing stem cells towards a specific tissue fate, but the precise Ca2+ signalling mechanisms involved in achieving these pleiotropic effects are still poorly understood. In this review, we compare the Ca2+ signalling pathways that are involved in regulating neural determination, which is the first step for both neural development, (neurogenesis) and kidney development (nephrogenesis). Figure 1 is a schematic representation of the Ca2+ signals that are known to be generated in the amphibian Xenopus laevis in the dorsal ectoderm during the process of neural induction, and in the dorso-lateral mesoderm during the specification of the embryonic kidney. Early neurogenesis / neural induction It is important to bear in mind that although neural induction is considered to be similar (from the point of view of the morphological events and signalling pathways involved), for most if not all vertebrates, in reality only a few species have been studied in great detail. Indeed, much of the research on neural induction has been conducted with amphibian embryos. Traditionally, Xenopus sp. has been used as an animal model for investigating the inductive events and cellular mechanisms that occur during organogenesis because the embryos are easy to obtain in high numbers and are relatively large in size. Thus Xenopus embryos are an especially easy model system to use when performing microinjection and microsurgery. Neural induction occurs during gastrulation and the neural tissues, like the epidermal tissues, are derived from the ectoderm. During gastrulation in vertebrates, the ectodermal 1 This is the Pre-Published Version Moreau et al, review in Cell Calcium 2015 cells give rise to epidermal progenitors on the ventral side of the embryo and to neural progenitors in the dorsal side. This binary choice of cell fate during neural induction is controlled by complex mechanisms that involve both positive effectors (such as fibroblast growth factors, FGFs) and negative effectors (such as bone morphogenetic proteins, BMPs; Wingless/Int proteins, Wnts and Nodal) [4-6]. One of the key regulatory mechanisms involved in the conversion of ectoderm into neuroectoderm is the inhibition of the BMP pathway by noggin, chordin, and follistatin, which are factors secreted by the dorsal mesoderm. Following neural induction, the neuroectoderm develops into the neural plate, which consists of undifferentiated dividing neuroepithelial cells, and then later in development these cells exit the cell cycle and differentiate into neurons and glial cells. For the purposes of this article, however, we are limiting the topic of our review to that of neural induction, as this is the stage that specifically involves embryonic stem cells. With a combination of the bioluminescent Ca2+ reporter, aequorin, and a custom- designed luminescence imaging microscope, it has previously been shown that during 2+ 2+ gastrulation in amphibian embryos, a gradual elevation of intracellular Ca ([Ca ]i) and a series of superimposed rapid Ca2+ transients are generated exclusively in the dorsal ectoderm cells (the tissue where neural induction takes place). On the other hand, neither the Ca2+ elevation nor the distinct Ca2+ transients are generated in the ventral ectoderm cells, which are at the origin of the epidermis [7, 8]. The onset of this Ca2+ signalling activity occurs at the blastula stage, long before the start of gastrulation (i.e., before mesoderm invagination). These observations have been confirmed in Xenopus [9] and have also been demonstrated in the chick [10] suggesting that neural induction starts before gastrulation. In Xenopus embryos, the spontaneous Ca2+ transients are initially localized in the most anterior part of the dorsal ectoderm and the accumulation pattern of these Ca2+ transients over time correlates with the formation of the prospective neuroectoderm. In addition, as gastrulation proceeds, the Ca2+ transients increase both in number and intensity, so that they reach a peak activity by mid- gastrulation, a stage where neural determination is thought to have occurred [8]. Therefore, the Ca2+ transients observed in the dorsal ectoderm constitute the first directly visualized events linked to neural induction (Figure 1A, B). The animal cap model 2 This is the Pre-Published Version Moreau et al, review in Cell Calcium 2015 In blastula stage Xenopus embryos, the animal cap constitutes the region around the animal pole, which is destined to form the ectoderm during normal development. This tissue retains it pluripotent nature and it can be easily dissected and maintained in simple culture medium. Upon exposure to specific inducers, however, the animal cap can differentiate into neural, mesodermal, or endodermal tissues. In this way, therefore, the cells of the animal cap have been described as being equivalent to mammalian embryonic stem cells [11]. Animal caps cultured in vitro have been shown to reproduce the in vivo induction of amphibian tissues and they are therefore considered to be a very useful tool for investigating the differentiation mechanisms that occur in normal embryonic development. Indeed, experiments with animal caps have demonstrated that in the amphibian embryo, Ca2+ is a necessary and sufficient to convert ectoderm into neuroectoderm [8]. In addition, animal caps have been induced to differentiate into neurons and glial cells following short term culture in the presence of caffeine, which triggers a rise of intracellular Ca2+ [12]. This ex vivo assay has also been used to further characterize the Ca2+ signalling pathways that lead to the expression of neural specific genes. Implication of calcium channels. The ability of ectoderm cells to be induced to differentiate into neural tissue (called neural competence) [13, 14], is acquired shortly before gastrulation and is then lost during the late gastrula stages. In amphibians, neural competence is associated with the expression of 2+ functional CaV1.2 channels (i.e., L-type voltage-dependent Ca channels) in the plasma membrane [15, 16]. The highest density of CaV1.2 channels is reached at mid-gastrula, when neural competence of the ectoderm is optimal. There is subsequently a decrease in the density of CaV1.2 channels, which occurs simultaneously with the normal loss of competence, at the end of gastrulation. This temporal pattern of CaV1.2 channel expression correlates with the dynamic pattern of Ca2+ transients. When the function of CaV1.2 channels was inhibited by treatment with specific antagonists during gastrulation, there was a concomitant inhibition in the generation of Ca2+ transients and a decrease in the resting level of intracellular Ca2+, which suggests that the Ca2+ transients might be generated via the activation of CaV1.2 channels [7, 8]. In addition, the inhibition of these Ca2+ transients induced a downregulation of at least two of the early neural genes (i.e., zic3 and geminin) as well as severe abnormalities in the anterior nervous system. 3 This is the Pre-Published Version Moreau et al, review in Cell Calcium 2015 The most apparent defects were observed in the head including a reduction in the size or total absence of eyes, as well as a lack of melanophores [8, 17]. Thus, in the naïve ectoderm cells 2+ of Xenopus, an influx of Ca through CaV1.2 channels is likely to be the main component of 2+ the signalling pathway that induces the changes in [Ca ]i observed both in vivo and ex vivo during neural induction [18]. However, It should be noted that members of the TRP (transient receptor potential) channel family, particularly TRPC1, are also likely to be involved [19]. Acquisition of neural fate in amphibians therefore appears to require the expression of functional CaV1.2 channels in the ectoderm. This finding, however, prompted several new 2+ questions: (1) Given that CaV1.2 channels are voltage-operated Ca channels, what is the mechanism by which these channels are specifically activated in the dorsal ectoderm during the process of neural induction? (2) What are the genes activated downstream of the Ca2+ signals? (3) Are the Ca2+ signals that are involved in neural induction, conserved among
Recommended publications
  • Bivariate Genome-Wide Association Analysis of the Growth and Intake Components of Feed Efficiency
    Bivariate Genome-Wide Association Analysis of the Growth and Intake Components of Feed Efficiency Nick V. L. Sera˜o1., Dianelys Gonza´lez-Pen˜ a1., Jonathan E. Beever1, Germa´n A. Bollero2, Bruce R. Southey1, Daniel B. Faulkner1, Sandra L. Rodriguez-Zas1,3,4* 1 Department of Animal Sciences, University of Illinois at Urbana-Champaign, Urbana, Illinois, United States of America, 2 Department of Crop Sciences, University of Illinois at Urbana-Champaign, Urbana, Illinois, United States of America, 3 Department of Statistics, University of Illinois at Urbana-Champaign, Champaign, Illinois, United States of America, 4 Institute for Genomic Biology, University of Illinois at Urbana-Champaign, Urbana, Illinois, United States of America Abstract Single nucleotide polymorphisms (SNPs) associated with average daily gain (ADG) and dry matter intake (DMI), two major components of feed efficiency in cattle, were identified in a genome-wide association study (GWAS). Uni- and multi-SNP models were used to describe feed efficiency in a training data set and the results were confirmed in a validation data set. Results from the univariate and bivariate analyses of ADG and DMI, adjusted by the feedlot beef steer maintenance requirements, were compared. The bivariate uni-SNP analysis identified (P-value ,0.0001) 11 SNPs, meanwhile the univariate analyses of ADG and DMI identified 8 and 9 SNPs, respectively. Among the six SNPs confirmed in the validation data set, five SNPs were mapped to KDELC2, PHOX2A, and TMEM40. Findings from the uni-SNP models were used to develop highly accurate predictive multi-SNP models in the training data set. Despite the substantially smaller size of the validation data set, the training multi-SNP models had slightly lower predictive ability when applied to the validation data set.
    [Show full text]
  • Genome-Wide Association Study of Body Weight
    Genome-wide association study of body weight in Australian Merino sheep reveals an orthologous region on OAR6 to human and bovine genomic regions affecting height and weight Hawlader A. Al-Mamun, Paul Kwan, Samuel A. Clark, Mohammad H. Ferdosi, Ross Tellam, Cedric Gondro To cite this version: Hawlader A. Al-Mamun, Paul Kwan, Samuel A. Clark, Mohammad H. Ferdosi, Ross Tellam, et al.. Genome-wide association study of body weight in Australian Merino sheep reveals an orthologous region on OAR6 to human and bovine genomic regions affecting height and weight. Genetics Selection Evolution, 2015, 47 (1), pp.66. 10.1186/s12711-015-0142-4. hal-01341302 HAL Id: hal-01341302 https://hal.archives-ouvertes.fr/hal-01341302 Submitted on 4 Jul 2016 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. et al. Genetics Selection Evolution Al-Mamun (2015) 47:66 Genetics DOI 10.1186/s12711-015-0142-4 Selection Evolution RESEARCH ARTICLE Open Access Genome-wide association study of body weight in Australian Merino sheep reveals an orthologous region on OAR6 to human and bovine genomic regions affecting height and weight Hawlader A. Al-Mamun1,2, Paul Kwan2, Samuel A.
    [Show full text]
  • A Genome-Wide Association Study Identifies Variants in KCNIP4
    OPEN The Pharmacogenomics Journal (2016) 16, 231–237 © 2016 Macmillan Publishers Limited All rights reserved 1470-269X/16 www.nature.com/tpj ORIGINAL ARTICLE A genome-wide association study identifies variants in KCNIP4 associated with ACE inhibitor-induced cough JD Mosley1, CM Shaffer1, SL Van Driest1,2, PE Weeke1,3, QS Wells1, JH Karnes1, DR Velez Edwards4, W-Q Wei5, PL Teixeira5, L Bastarache5, DC Crawford6,RLi7, TA Manolio7, EP Bottinger8, CA McCarty9, JG Linneman10, MH Brilliant10, JA Pacheco11, W Thompson11, RL Chisholm11, GP Jarvik12, DR Crosslin12, DS Carrell13, E Baldwin13, J Ralston13, EB Larson13, J Grafton13, A Scrol13, H Jouni14, IJ Kullo14, G Tromp15, KM Borthwick15, H Kuivaniemi15, DJ Carey15, MD Ritchie16, Y Bradford16, SS Verma16, CG Chute17, A Veluchamy18, MK Siddiqui18, CNA Palmer18, A Doney18, SH MahmoudPour19, AH Maitland-van der Zee19, AD Morris20, JC Denny1,5,21 and DM Roden1,21 The most common side effect of angiotensin-converting enzyme inhibitor (ACEi) drugs is cough. We conducted a genome-wide association study (GWAS) of ACEi-induced cough among 7080 subjects of diverse ancestries in the Electronic Medical Records and Genomics (eMERGE) network. Cases were subjects diagnosed with ACEi-induced cough. Controls were subjects with at least 6 months of ACEi use and no cough. A GWAS (1595 cases and 5485 controls) identified associations on chromosome 4 in an intron of KCNIP4. The strongest association was at rs145489027 (minor allele frequency = 0.33, odds ratio (OR) = 1.3 (95% confidence interval (CI): 1.2–1.4), P = 1.0 × 10 − 8). Replication for six single-nucleotide polymorphisms (SNPs) in KCNIP4 was tested in a second eMERGE population (n = 926) and in the Genetics of Diabetes Audit and Research in Tayside, Scotland (GoDARTS) cohort (n = 4309).
    [Show full text]
  • Emerging Roles for Multifunctional Ion Channel Auxiliary Subunits in Cancer T ⁎ Alexander S
    Cell Calcium 80 (2019) 125–140 Contents lists available at ScienceDirect Cell Calcium journal homepage: www.elsevier.com/locate/ceca Emerging roles for multifunctional ion channel auxiliary subunits in cancer T ⁎ Alexander S. Hawortha,b, William J. Brackenburya,b, a Department of Biology, University of York, Heslington, York, YO10 5DD, UK b York Biomedical Research Institute, University of York, Heslington, York, YO10 5DD, UK ARTICLE INFO ABSTRACT Keywords: Several superfamilies of plasma membrane channels which regulate transmembrane ion flux have also been Auxiliary subunit shown to regulate a multitude of cellular processes, including proliferation and migration. Ion channels are Cancer typically multimeric complexes consisting of conducting subunits and auxiliary, non-conducting subunits. Calcium channel Auxiliary subunits modulate the function of conducting subunits and have putative non-conducting roles, further Chloride channel expanding the repertoire of cellular processes governed by ion channel complexes to processes such as trans- Potassium channel cellular adhesion and gene transcription. Given this expansive influence of ion channels on cellular behaviour it Sodium channel is perhaps no surprise that aberrant ion channel expression is a common occurrence in cancer. This review will − focus on the conducting and non-conducting roles of the auxiliary subunits of various Ca2+,K+,Na+ and Cl channels and the burgeoning evidence linking such auxiliary subunits to cancer. Several subunits are upregu- lated (e.g. Cavβ,Cavγ) and downregulated (e.g. Kvβ) in cancer, while other subunits have been functionally implicated as oncogenes (e.g. Navβ1,Cavα2δ1) and tumour suppressor genes (e.g. CLCA2, KCNE2, BKγ1) based on in vivo studies. The strengthening link between ion channel auxiliary subunits and cancer has exposed these subunits as potential biomarkers and therapeutic targets.
    [Show full text]
  • Transposon Activation Mutagenesis As a Screening Tool for Identifying
    Chen et al. BMC Cancer 2013, 13:93 http://www.biomedcentral.com/1471-2407/13/93 RESEARCH ARTICLE Open Access Transposon activation mutagenesis as a screening tool for identifying resistance to cancer therapeutics Li Chen1,2*, Lynda Stuart2, Toshiro K Ohsumi3, Shawn Burgess4, Gaurav K Varshney4, Anahita Dastur1, Mark Borowsky3, Cyril Benes1, Adam Lacy-Hulbert2 and Emmett V Schmidt2 Abstract Background: The development of resistance to chemotherapies represents a significant barrier to successful cancer treatment. Resistance mechanisms are complex, can involve diverse and often unexpected cellular processes, and can vary with both the underlying genetic lesion and the origin or type of tumor. For these reasons developing experimental strategies that could be used to understand, identify and predict mechanisms of resistance in different malignant cells would be a major advance. Methods: Here we describe a gain-of-function forward genetic approach for identifying mechanisms of resistance. This approach uses a modified piggyBac transposon to generate libraries of mutagenized cells, each containing transposon insertions that randomly activate nearby gene expression. Genes of interest are identified using next- gen high-throughput sequencing and barcode multiplexing is used to reduce experimental cost. Results: Using this approach we successfully identify genes involved in paclitaxel resistance in a variety of cancer cell lines, including the multidrug transporter ABCB1, a previously identified major paclitaxel resistance gene. Analysis of co-occurring transposons integration sites in single cell clone allows for the identification of genes that might act cooperatively to produce drug resistance a level of information not accessible using RNAi or ORF expression screening approaches. Conclusion: We have developed a powerful pipeline to systematically discover drug resistance in mammalian cells in vitro.
    [Show full text]
  • Supplementary Table S4. FGA Co-Expressed Gene List in LUAD
    Supplementary Table S4. FGA co-expressed gene list in LUAD tumors Symbol R Locus Description FGG 0.919 4q28 fibrinogen gamma chain FGL1 0.635 8p22 fibrinogen-like 1 SLC7A2 0.536 8p22 solute carrier family 7 (cationic amino acid transporter, y+ system), member 2 DUSP4 0.521 8p12-p11 dual specificity phosphatase 4 HAL 0.51 12q22-q24.1histidine ammonia-lyase PDE4D 0.499 5q12 phosphodiesterase 4D, cAMP-specific FURIN 0.497 15q26.1 furin (paired basic amino acid cleaving enzyme) CPS1 0.49 2q35 carbamoyl-phosphate synthase 1, mitochondrial TESC 0.478 12q24.22 tescalcin INHA 0.465 2q35 inhibin, alpha S100P 0.461 4p16 S100 calcium binding protein P VPS37A 0.447 8p22 vacuolar protein sorting 37 homolog A (S. cerevisiae) SLC16A14 0.447 2q36.3 solute carrier family 16, member 14 PPARGC1A 0.443 4p15.1 peroxisome proliferator-activated receptor gamma, coactivator 1 alpha SIK1 0.435 21q22.3 salt-inducible kinase 1 IRS2 0.434 13q34 insulin receptor substrate 2 RND1 0.433 12q12 Rho family GTPase 1 HGD 0.433 3q13.33 homogentisate 1,2-dioxygenase PTP4A1 0.432 6q12 protein tyrosine phosphatase type IVA, member 1 C8orf4 0.428 8p11.2 chromosome 8 open reading frame 4 DDC 0.427 7p12.2 dopa decarboxylase (aromatic L-amino acid decarboxylase) TACC2 0.427 10q26 transforming, acidic coiled-coil containing protein 2 MUC13 0.422 3q21.2 mucin 13, cell surface associated C5 0.412 9q33-q34 complement component 5 NR4A2 0.412 2q22-q23 nuclear receptor subfamily 4, group A, member 2 EYS 0.411 6q12 eyes shut homolog (Drosophila) GPX2 0.406 14q24.1 glutathione peroxidase
    [Show full text]
  • New Approach for Untangling the Role of Uncommon Calcium-Binding Proteins in the Central Nervous System
    brain sciences Review New Approach for Untangling the Role of Uncommon Calcium-Binding Proteins in the Central Nervous System Krisztina Kelemen * and Tibor Szilágyi Department of Physiology, Doctoral School, Faculty of Medicine, George Emil Palade University of Medicine, Pharmacy, Science, and Technology of Targu Mures, 540142 Târgu Mures, , Romania; [email protected] * Correspondence: [email protected]; Tel.: +40-746-248064 Abstract: Although Ca2+ ion plays an essential role in cellular physiology, calcium-binding proteins (CaBPs) were long used for mainly as immunohistochemical markers of specific cell types in different regions of the central nervous system. They are a heterogeneous and wide-ranging group of proteins. Their function was studied intensively in the last two decades and a tremendous amount of informa- tion was gathered about them. Girard et al. compiled a comprehensive list of the gene-expression profiles of the entire EF-hand gene superfamily in the murine brain. We selected from this database those CaBPs which are related to information processing and/or neuronal signalling, have a Ca2+- buffer activity, Ca2+-sensor activity, modulator of Ca2+-channel activity, or a yet unknown function. In this way we created a gene function-based selection of the CaBPs. We cross-referenced these findings with publicly available, high-quality RNA-sequencing and in situ hybridization databases (Human Protein Atlas (HPA), Brain RNA-seq database and Allen Brain Atlas integrated into the HPA) and created gene expression heat maps of the regional and cell type-specific expression levels of the selected CaBPs. This represents a useful tool to predict and investigate different expression patterns and functions of the less-known CaBPs of the central nervous system.
    [Show full text]
  • Microarray-Based Approach Identifies Micrornas and Their Target
    BMC Genomics BioMed Central Research article Open Access Microarray-based approach identifies microRNAs and their target functional patterns in polycystic kidney disease Priyanka Pandey1, Benedikt Brors2, Prashant K Srivastava3, Andrea Bott1, Susanne NE Boehn1, Herrmann-Josef Groene3 and Norbert Gretz*1 Address: 1Medical Research Center, University Hospital Mannheim, D-68167 Mannheim, Germany, 2Department of Theoretical Bioinformatics, German Cancer Research Center, D-69120 Heidelberg, Germany and 3Department of Cellular and Molecular Pathology, German Cancer Research Center, D-69120 Heidelberg, Germany Email: Priyanka Pandey - [email protected]; Benedikt Brors - [email protected]; Prashant K Srivastava - [email protected]; Andrea Bott - [email protected]; Susanne NE Boehn - [email protected]; Herrmann-Josef Groene - [email protected]; Norbert Gretz* - [email protected] * Corresponding author Published: 23 December 2008 Received: 11 September 2008 Accepted: 23 December 2008 BMC Genomics 2008, 9:624 doi:10.1186/1471-2164-9-624 This article is available from: http://www.biomedcentral.com/1471-2164/9/624 © 2008 Pandey et al; licensee BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. Abstract Background: MicroRNAs (miRNAs) play key roles in mammalian gene expression and several cellular processes, including differentiation, development, apoptosis and cancer pathomechanisms. Recently the biological importance of primary cilia has been recognized in a number of human genetic diseases. Numerous disorders are related to cilia dysfunction, including polycystic kidney disease (PKD).
    [Show full text]
  • Ca 2+ -Dependent Transcriptional Repressors KCNIP and Regulation
    Ca 2+ -Dependent Transcriptional Repressors KCNIP and Regulation of Prognosis Genes in Glioblastoma Isabelle Néant, Jacques Haiech, Marie-Claude Kilhoffer, Francisco Aulestia, Marc Moreau, Catherine Leclerc To cite this version: Isabelle Néant, Jacques Haiech, Marie-Claude Kilhoffer, Francisco Aulestia, Marc Moreau, et al.. Ca 2+ -Dependent Transcriptional Repressors KCNIP and Regulation of Prognosis Genes in Glioblas- toma. Frontiers in Molecular Neuroscience, Frontiers Media, 2018, 10.3389/fnmol.2018.00472. hal- 02329159 HAL Id: hal-02329159 https://hal.archives-ouvertes.fr/hal-02329159 Submitted on 23 Oct 2019 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. fnmol-11-00472 December 16, 2018 Time: 13:6 # 1 REVIEW published: 18 December 2018 doi: 10.3389/fnmol.2018.00472 Ca2C-Dependent Transcriptional Repressors KCNIP and Regulation of Prognosis Genes in Glioblastoma Isabelle Néant1, Jacques Haiech2, Marie-Claude Kilhoffer2, Francisco J. Aulestia3, Marc Moreau1 and Catherine Leclerc1* 1 Centre de Biologie du Développement (CBD), Centre de Biologie Intégrative (CBI), CNRS, UPS, Université de Toulouse, Toulouse, France, 2 Laboratoire d’Excellence Medalis, CNRS, LIT UMR 7200, Université de Strasbourg, Strasbourg, France, 3 Department of Basic Science and Craniofacial Biology, NYU College of Dentistry, New York, NY, United States Glioblastomas (GBMs) are the most aggressive and lethal primary astrocytic tumors in adults, with very poor prognosis.
    [Show full text]
  • Genome-Wide Analysis of Differential Gene Expression and Splicing in Excitatory Neurons and Interneuron Subtypes
    Research Articles: Cellular/Molecular Genome-wide analysis of differential gene expression and splicing in excitatory neurons and interneuron subtypes https://doi.org/10.1523/JNEUROSCI.1615-19.2019 Cite as: J. Neurosci 2019; 10.1523/JNEUROSCI.1615-19.2019 Received: 8 July 2019 Revised: 17 October 2019 Accepted: 3 December 2019 This Early Release article has been peer-reviewed and accepted, but has not been through the composition and copyediting processes. The final version may differ slightly in style or formatting and will contain links to any extended data. Alerts: Sign up at www.jneurosci.org/alerts to receive customized email alerts when the fully formatted version of this article is published. Copyright © 2019 Huntley et al. This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International license, which permits unrestricted use, distribution and reproduction in any medium provided that the original work is properly attributed. 1 Genome-wide analysis of differential gene expression and splicing in excitatory 2 neurons and interneuron subtypes 3 4 Abbreviated Title: Excitatory and inhibitory neuron transcriptomics 5 6 Melanie A. Huntley1,2*, Karpagam Srinivasan2, Brad A. Friedman1,2, Tzu-Ming Wang2, 7 Ada X. Yee2, Yuanyuan Wang2, Josh S. Kaminker1,2, Morgan Sheng2, David V. Hansen2, 8 Jesse E. Hanson2* 9 10 1 Department of Bioinformatics and Computational Biology, 2 Department of 11 Neuroscience, Genentech, Inc., South San Francisco, CA. 12 *Correspondence to [email protected] or [email protected] 13 14 Conflict of interest: All authors are current or former employees of Genentech, Inc.
    [Show full text]
  • KCNIP4 (NM 001035004) Human Recombinant Protein Product Data
    OriGene Technologies, Inc. 9620 Medical Center Drive, Ste 200 Rockville, MD 20850, US Phone: +1-888-267-4436 [email protected] EU: [email protected] CN: [email protected] Product datasheet for TP307464 KCNIP4 (NM_001035004) Human Recombinant Protein Product data: Product Type: Recombinant Proteins Description: Recombinant protein of human Kv channel interacting protein 4 (KCNIP4), transcript variant 6 Species: Human Expression Host: HEK293T Tag: C-Myc/DDK Predicted MW: 21.8 kDa Concentration: >50 ug/mL as determined by microplate BCA method Purity: > 80% as determined by SDS-PAGE and Coomassie blue staining Buffer: 25 mM Tris.HCl, pH 7.3, 100 mM glycine, 10% glycerol Preparation: Recombinant protein was captured through anti-DDK affinity column followed by conventional chromatography steps. Storage: Store at -80°C. Stability: Stable for 12 months from the date of receipt of the product under proper storage and handling conditions. Avoid repeated freeze-thaw cycles. RefSeq: NP_001030176 Locus ID: 80333 UniProt ID: Q6PIL6, A8K4N3 RefSeq Size: 2345 Cytogenetics: 4p15.31-p15.2 RefSeq ORF: 753 Synonyms: CALP; KCHIP4 This product is to be used for laboratory only. Not for diagnostic or therapeutic use. View online » ©2021 OriGene Technologies, Inc., 9620 Medical Center Drive, Ste 200, Rockville, MD 20850, US 1 / 2 KCNIP4 (NM_001035004) Human Recombinant Protein – TP307464 Summary: This gene encodes a member of the family of voltage-gated potassium (Kv) channel- interacting proteins (KCNIPs), which belong to the recoverin branch of the EF-hand superfamily. Members of the KCNIP family are small calcium binding proteins. They all have EF-hand-like domains, and differ from each other in the N-terminus.
    [Show full text]
  • Gene Expression Mechanism and Repertoire of ASC-Mediated
    The Journal of Immunology Mechanism and Repertoire of ASC-Mediated Gene Expression1 Mizuho Hasegawa,2* Ryu Imamura,* Kou Motani,* Takumi Nishiuchi,† Norihiko Matsumoto,* Takeshi Kinoshita,* and Takashi Suda3* Apoptosis-associated speck-like protein containing a caspase recruitment domain (ASC) is an adaptor molecule that mediates inflammatory and apoptotic signals. Although the role of ASC in caspase-1-mediated IL-1␤ and IL-18 maturation is well known, ASC also induces NF-␬B activation and cytokine gene expression in human cells. In this study, we investigated the molecular mechanism and repertoire of ASC-induced gene expression in human cells. We found that the specific activation of ASC induced AP-1 activity, which was required for optimal IL8 promoter activity. ASC activation also induced STAT3-, but not STAT1-, IFN-stimulated gene factor 3- or NF-AT-dependent reporter gene expression. The ASC-mediated AP-1 activation was NF-␬B-independent and primarily cell-autonomous response, whereas the STAT3 activation required NF-␬B activation and was mediated by a factor that can act in a paracrine manner. ASC-mediated AP-1 activation was inhibited by chemical or protein inhibitors for caspase-8, caspase-8-targeting small-interfering RNA, and p38 and JNK inhibitors, but not by a caspase-1 inhibitor, caspase-9 or Fas-associated death domain protein (FADD) dominant-negative mutants, FADD- or RICK-targeting small-interfering RNAs, or a MEK inhibitor, indicating that the ASC-induced AP-1 activation is mediated by caspase-8, p38, and JNK, but does not require caspase-1, caspase-9, FADD, RICK, or ERK. DNA microarray analyses identified 75 genes that were induced by ASC activation.
    [Show full text]