SH3TC2/KIAA1985 Protein Is Required for Proper Myelination and the Integrity of the Node of Ranvier in the Peripheral Nervous System
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Versican V2 Assembles the Extracellular Matrix Surrounding the Nodes of Ranvier in the CNS
The Journal of Neuroscience, June 17, 2009 • 29(24):7731–7742 • 7731 Cellular/Molecular Versican V2 Assembles the Extracellular Matrix Surrounding the Nodes of Ranvier in the CNS María T. Dours-Zimmermann,1 Konrad Maurer,2 Uwe Rauch,3 Wilhelm Stoffel,4 Reinhard Fa¨ssler,5 and Dieter R. Zimmermann1 Institutes of 1Surgical Pathology and 2Anesthesiology, University Hospital Zurich, CH-8091 Zurich, Switzerland, 3Vascular Wall Biology, Department of Experimental Medical Science, University of Lund, S-221 00 Lund, Sweden, 4Center for Biochemistry, Medical Faculty, University of Cologne, D-50931 Cologne, Germany, and 5Department of Molecular Medicine, Max Planck Institute of Biochemistry, D-82152 Martinsried, Germany The CNS-restricted versican splice-variant V2 is a large chondroitin sulfate proteoglycan incorporated in the extracellular matrix sur- rounding myelinated fibers and particularly accumulating at nodes of Ranvier. In vitro, it is a potent inhibitor of axonal growth and therefore considered to participate in the reduction of structural plasticity connected to myelination. To study the role of versican V2 during postnatal development, we designed a novel isoform-specific gene inactivation approach circumventing early embryonic lethality of the complete knock-out and preventing compensation by the remaining versican splice variants. These mice are viable and fertile; however, they display major molecular alterations at the nodes of Ranvier. While the clustering of nodal sodium channels and paranodal structures appear in versican V2-deficient mice unaffected, the formation of the extracellular matrix surrounding the nodes is largely impaired. The conjoint loss of tenascin-R and phosphacan from the perinodal matrix provide strong evidence that versican V2, possibly controlled by a nodal receptor, organizes the extracellular matrix assembly in vivo. -
Inherited Neuropathies
407 Inherited Neuropathies Vera Fridman, MD1 M. M. Reilly, MD, FRCP, FRCPI2 1 Department of Neurology, Neuromuscular Diagnostic Center, Address for correspondence Vera Fridman, MD, Neuromuscular Massachusetts General Hospital, Boston, Massachusetts Diagnostic Center, Massachusetts General Hospital, Boston, 2 MRC Centre for Neuromuscular Diseases, UCL Institute of Neurology Massachusetts, 165 Cambridge St. Boston, MA 02114 and The National Hospital for Neurology and Neurosurgery, Queen (e-mail: [email protected]). Square, London, United Kingdom Semin Neurol 2015;35:407–423. Abstract Hereditary neuropathies (HNs) are among the most common inherited neurologic Keywords disorders and are diverse both clinically and genetically. Recent genetic advances have ► hereditary contributed to a rapid expansion of identifiable causes of HN and have broadened the neuropathy phenotypic spectrum associated with many of the causative mutations. The underlying ► Charcot-Marie-Tooth molecular pathways of disease have also been better delineated, leading to the promise disease for potential treatments. This chapter reviews the clinical and biological aspects of the ► hereditary sensory common causes of HN and addresses the challenges of approaching the diagnostic and motor workup of these conditions in a rapidly evolving genetic landscape. neuropathy ► hereditary sensory and autonomic neuropathy Hereditary neuropathies (HN) are among the most common Select forms of HN also involve cranial nerves and respiratory inherited neurologic diseases, with a prevalence of 1 in 2,500 function. Nevertheless, in the majority of patients with HN individuals.1,2 They encompass a clinically heterogeneous set there is no shortening of life expectancy. of disorders and vary greatly in severity, spanning a spectrum Historically, hereditary neuropathies have been classified from mildly symptomatic forms to those resulting in severe based on the primary site of nerve pathology (myelin vs. -
A Computational Approach for Defining a Signature of Β-Cell Golgi Stress in Diabetes Mellitus
Page 1 of 781 Diabetes A Computational Approach for Defining a Signature of β-Cell Golgi Stress in Diabetes Mellitus Robert N. Bone1,6,7, Olufunmilola Oyebamiji2, Sayali Talware2, Sharmila Selvaraj2, Preethi Krishnan3,6, Farooq Syed1,6,7, Huanmei Wu2, Carmella Evans-Molina 1,3,4,5,6,7,8* Departments of 1Pediatrics, 3Medicine, 4Anatomy, Cell Biology & Physiology, 5Biochemistry & Molecular Biology, the 6Center for Diabetes & Metabolic Diseases, and the 7Herman B. Wells Center for Pediatric Research, Indiana University School of Medicine, Indianapolis, IN 46202; 2Department of BioHealth Informatics, Indiana University-Purdue University Indianapolis, Indianapolis, IN, 46202; 8Roudebush VA Medical Center, Indianapolis, IN 46202. *Corresponding Author(s): Carmella Evans-Molina, MD, PhD ([email protected]) Indiana University School of Medicine, 635 Barnhill Drive, MS 2031A, Indianapolis, IN 46202, Telephone: (317) 274-4145, Fax (317) 274-4107 Running Title: Golgi Stress Response in Diabetes Word Count: 4358 Number of Figures: 6 Keywords: Golgi apparatus stress, Islets, β cell, Type 1 diabetes, Type 2 diabetes 1 Diabetes Publish Ahead of Print, published online August 20, 2020 Diabetes Page 2 of 781 ABSTRACT The Golgi apparatus (GA) is an important site of insulin processing and granule maturation, but whether GA organelle dysfunction and GA stress are present in the diabetic β-cell has not been tested. We utilized an informatics-based approach to develop a transcriptional signature of β-cell GA stress using existing RNA sequencing and microarray datasets generated using human islets from donors with diabetes and islets where type 1(T1D) and type 2 diabetes (T2D) had been modeled ex vivo. To narrow our results to GA-specific genes, we applied a filter set of 1,030 genes accepted as GA associated. -
Lupo Et Al. Vincenzo Lupo , Máximo I
Lupo et al. MUTATIONS IN THE SH3TC2 PROTEIN CAUSING CHARCOT-MARIE-TOOTH DISEASE TYPE 4C AFFECT ITS LOCALIZATION IN THE PLASMA MEMBRANE AND ENDOCYTIC PATHWAY Vincenzo Lupo1,2, Máximo I. Galindo1,2, Dolores Martínez-Rubio1,2, Teresa Sevilla3,4, Juan J. Vílchez3,4, Francesc Palau1,2, Carmen Espinós2. 1. Genetics and Molecular Medicine Unit, Instituto de Biomedicina de Valencia (IBV), CSIC, 46010 Valencia, Spain. 2. CIBER de Enfermedades Raras (CIBERER), 46010 Valencia, Spain. 3. Neurology Service, Hospital Universitari La Fe, 46009 Valencia, Spain. 4. CIBER de Enfermedades Neurodegenerativas (CIBERNED), 46009 Valencia, Spain. Corresponding author: Dr, Francesc Palau Genetics and Molecular Medicine Unit Instituto de Biomedicina de Valencia (IBV), CSIC c/ Jaume Roig, 11. 46010 Valencia, Spain Fax: + 34 96 369 0800 Telephone number: + 34 96 339 3773 Email: [email protected] 1 Lupo et al. Abstract (250 words) Mutations in SH3TC2 cause Charcot-Marie-Tooth disease (CMT) type 4C, a demyelinating inherited neuropathy characterized by early onset and scoliosis. Here we demonstrate that SH3TC2 is expressed in several components of the endocytic pathway including early endosomes, late endosomes and clathrin-coated vesicles close to the trans-Golgi network, and in the plasma membrane. Myristoylation of SH3TC2 in glycine 2 is necessary but not sufficient for the proper location of the protein in the cell membranes. In addition to myristoylation, correct anchoring also needs the presence of SH3 and TPR domains. Mutations that cause a stop codon and produce premature truncations that remove most of the TPR domains are expressed as the wild type protein. In contrast, missense mutations in or around the region of the first TPR domain are not expressed in early endosomes, have reduced expression in plasma membrane and late endosomes, and are variably expressed in clathrin-coated vesicles. -
Supplementary Table 1: Adhesion Genes Data Set
Supplementary Table 1: Adhesion genes data set PROBE Entrez Gene ID Celera Gene ID Gene_Symbol Gene_Name 160832 1 hCG201364.3 A1BG alpha-1-B glycoprotein 223658 1 hCG201364.3 A1BG alpha-1-B glycoprotein 212988 102 hCG40040.3 ADAM10 ADAM metallopeptidase domain 10 133411 4185 hCG28232.2 ADAM11 ADAM metallopeptidase domain 11 110695 8038 hCG40937.4 ADAM12 ADAM metallopeptidase domain 12 (meltrin alpha) 195222 8038 hCG40937.4 ADAM12 ADAM metallopeptidase domain 12 (meltrin alpha) 165344 8751 hCG20021.3 ADAM15 ADAM metallopeptidase domain 15 (metargidin) 189065 6868 null ADAM17 ADAM metallopeptidase domain 17 (tumor necrosis factor, alpha, converting enzyme) 108119 8728 hCG15398.4 ADAM19 ADAM metallopeptidase domain 19 (meltrin beta) 117763 8748 hCG20675.3 ADAM20 ADAM metallopeptidase domain 20 126448 8747 hCG1785634.2 ADAM21 ADAM metallopeptidase domain 21 208981 8747 hCG1785634.2|hCG2042897 ADAM21 ADAM metallopeptidase domain 21 180903 53616 hCG17212.4 ADAM22 ADAM metallopeptidase domain 22 177272 8745 hCG1811623.1 ADAM23 ADAM metallopeptidase domain 23 102384 10863 hCG1818505.1 ADAM28 ADAM metallopeptidase domain 28 119968 11086 hCG1786734.2 ADAM29 ADAM metallopeptidase domain 29 205542 11085 hCG1997196.1 ADAM30 ADAM metallopeptidase domain 30 148417 80332 hCG39255.4 ADAM33 ADAM metallopeptidase domain 33 140492 8756 hCG1789002.2 ADAM7 ADAM metallopeptidase domain 7 122603 101 hCG1816947.1 ADAM8 ADAM metallopeptidase domain 8 183965 8754 hCG1996391 ADAM9 ADAM metallopeptidase domain 9 (meltrin gamma) 129974 27299 hCG15447.3 ADAMDEC1 ADAM-like, -
Role of Versican, Hyaluronan and CD44 in Ovarian Cancer Metastasis
Int. J. Mol. Sci. 2011, 12, 1009-1029; doi:10.3390/ijms12021009 OPEN ACCESS International Journal of Molecular Sciences ISSN 1422-0067 www.mdpi.com/journal/ijms Review Role of Versican, Hyaluronan and CD44 in Ovarian Cancer Metastasis Miranda P. Ween 1,2, Martin K. Oehler 1,3 and Carmela Ricciardelli 1,* 1 Research Centre for Reproductive Health, School of Paediatrics and Reproductive Health, Robinson Institute, University of Adelaide, Adelaide, South Australia 5005, Australia; E-Mails: [email protected] (M.P.W.); [email protected] (M.K.O.) 2 Research Centre for Infectious Diseases, School of Molecular Biosciences, University of Adelaide, South Australia 5005, Australia 3 Department of Gynaecological Oncology, Royal Adelaide Hospital, Adelaide, South Australia 5000, Australia * Author to whom correspondence should be addressed; E-Mail: [email protected]; Tel.: +61-8-83038255; Fax: +61-8-83034099. Received: 30 November 2010; in revised form: 28 January 2011 / Accepted: 29 January 2011 / Published: 31 January 2011 Abstract: There is increasing evidence to suggest that extracellular matrix (ECM) components play an active role in tumor progression and are an important determinant for the growth and progression of solid tumors. Tumor cells interfere with the normal programming of ECM biosynthesis and can extensively modify the structure and composition of the matrix. In ovarian cancer alterations in the extracellular environment are critical for tumor initiation and progression and intra-peritoneal dissemination. ECM molecules including versican and hyaluronan (HA) which interacts with the HA receptor, CD44, have been shown to play critical roles in ovarian cancer metastasis. This review focuses on versican, HA, and CD44 and their potential as therapeutic targets for ovarian cancer. -
Inflammation Amplification by Versican: the First Mediator
Int. J. Mol. Sci. 2012, 13, 6873-6882; doi:10.3390/ijms13066873 OPEN ACCESS International Journal of Molecular Sciences ISSN 1422-0067 www.mdpi.com/journal/ijms Opinion Inflammation Amplification by Versican: The First Mediator Zhenwei Zhang 1,†, Lei Miao 2,† and Lianghua Wang 1,* 1 Department of Biochemistry and Molecular Biology, Second Military Medical University, Shanghai 200433, China; E-Mail: [email protected] 2 Department of Pharmacology, Zhejiang Chinese Medical University, Hangzhou 310053, China; E-Mail: [email protected] † These authors contributed equally to this work. * Author to whom correspondence should be addressed; E-Mail: [email protected]; Tel.: +86-21-81870970 (ext. 8011); Fax: +86-21-65334333. Received: 20 April 2012; in revised form: 3 May 2012 / Accepted: 29 May 2012 / Published: 6 June 2012 Abstract: The effects of inflammation may not always benefit the individual. Its amplifying nature represents a highly regulated biological program, and the inflammatory microenvironment is its essential component. Growing evidence suggests that the ECM (extracellular matrix) is important for the early steps of inflammation. Versican, a ubiquitous component of the ECM, contributes to the formation of the inflammatory response and is highly regulated by cytokines. Certain cytokines exert their initial effects on versican to alter the homeostasis of the inflammatory milieu, and inappropriate production of versican may promote the next inflammatory response. Therefore, versican could be the first step in the amplification of the inflammatory response, and ongoing research of this molecule may help to explain the pathogenesis of inflammation. Keywords: versican; cytokines; extracellular matrix homeostasis; inflammation amplification 1. Introduction Although inflammation helps to fight infection, it often results in an exacerbation of a diseased state in the individual [1]. -
Anglemetry of Neural Axis Cell Differentiation Genes by Structural Pressurotopy of DNA Loop Strand Segment Tropy in Reference to Tissue Macro-Compliance Hemant Sarin
Sarin Translational Medicine Communications (2019) 4:13 Translational Medicine https://doi.org/10.1186/s41231-019-0045-4 Communications RESEARCH Open Access Anglemetry of neural axis cell differentiation genes by structural pressurotopy of DNA loop strand segment tropy in reference to tissue macro-compliance Hemant Sarin Abstract Background: Even as the eukaryotic stranded DNA is known to heterochromatinize at the nuclear envelope in response to mechanical strain, the precise mechanistic basis for alterations in chromatin gene transcription in differentiating cell lineages has been difficult to determine due to limited spatial resolution for detection of shifts in reference to a specific gene in vitro. In this study, heterochromatin shift during euchromatin gene transcription has been studied by parallel determinations of DNA strand loop segmentation tropy nano-compliance (esebssiwaagoTQ units, linear nl), gene positioning angulation in linear normal two- 0 dimensional (2-D) z, y-vertical plane (anglemetry, ), horizontal alignment to the z, x-plane (vectormetry; mA, mM,a.u.),andby pressuromodulation mapping of differentiated neuron cell sub-class operating range for neuroaxis gene expression in reference to tissue macro-compliance (Peff). Methods: The esebssiwaagoTQ effectivepressureunit(Peff) maxima and minima for horizontal gene intergene base segment tropy loop alignment were determined (n = 224); the Peff esebssiwaagoTQ quotient were determined (n =28)foranalysisof gene intergene base loop segment tropy structure nano-compliance (n = 28; n = 188); and gene positioning anglemetry and vectormetry was performed (n = 42). The sebs intercept-to-sebssiwa intercept quotient for linear normalization was determined (bsebs/bsebssiwa) by exponential plotting of sub-episode block sum (sebs) (x1, y1; x2, y2) and sub-episode block sum split integrated weighted average (sebssiwa) functions was performed, and the sebs – sebssiwa function residuals were determined. -
Neuromuscular Junction Changes in a Mouse Model of Charcot-Marie-Tooth Disease Type 4C
International Journal of Molecular Sciences Article Neuromuscular Junction Changes in a Mouse Model of Charcot-Marie-Tooth Disease Type 4C Silvia Cipriani 1,2,3,†, Vietxuan Phan 4,†, Jean-Jacques Médard 5,6, Rita Horvath 7, Hanns Lochmüller 8,9,10,11 , Roman Chrast 5,6, Andreas Roos 4,12,† and Sally Spendiff 1,10,*,† 1 John Walton Muscular Dystrophy Research Centre, Newcastle University, Newcastle upon Tyne NE1 3BZ, UK; [email protected] 2 INSPE-Institute of Experimental Neurology, San Raffaele Scientific Institute, 20132 Milan, Italy 3 Division of Neuroscience, San Raffaele Scientific Institute, 20132 Milan, Italy 4 Leibniz-Institut für Analytische Wissenschaften -ISAS- e.V.; Otto-Hahn-Strasse 6b, 44227 Dortmund, Germany; [email protected] (V.P.); [email protected] (A.R.) 5 Department of Neuroscience, Karolinska Institutet, 171 65 Stockholm, Sweden; [email protected] (J.-J.M.); [email protected] (R.C.) 6 Department of Clinical Neuroscience, Karolinska Institutet, 171 65 Stockholm, Sweden 7 Department of Clinical Neurosciences, University of Cambridge, John Van Geest Cambridge Centre for Brain Repair, Forvie, Robinson way, Cambridge Biomedical Campus, Cambridge CB2 0PY, UK; [email protected] 8 Department of Neuropediatrics and Muscle Disorders, Medical Center-University of Freiburg, Mathildenstrasse 1, 79106 Freiburg, Germany; [email protected] 9 Centro Nacional de Análisis Genómico, Center for Genomic Regulation, Barcelona Institute of Science and Technology, Baldri I reixac 4, 08028 Barcelona, Spain 10 Children’s Hospital of Eastern Ontario Research Institute, University of Ottawa, Ottawa, ON K1H 8L1, Canada 11 Division of Neurology, Department of Medicine, The Ottawa Hospital, Riverside Drive, Ottawa, ON K1H 7X5, Canada 12 Department of Neuropediatrics, Developmental Neurology and Social Pediatrics, Centre for Neuromuscular Disorders in Children, University Children’s Hospital Essen, University of Duisburg-Essen, 45122 Essen, Germany * Correspondence: [email protected]; Tel.: +1-613-737-7600 (ext. -
Impacts of Massively Parallel Sequencing for Genetic Diagnosis of Neuromuscular Disorders
Acta Neuropathol (2013) 125:173–185 DOI 10.1007/s00401-012-1072-7 REVIEW Impacts of massively parallel sequencing for genetic diagnosis of neuromuscular disorders Nasim Vasli • Jocelyn Laporte Received: 8 October 2012 / Revised: 27 November 2012 / Accepted: 28 November 2012 / Published online: 7 December 2012 Ó Springer-Verlag Berlin Heidelberg 2012 Abstract Neuromuscular disorders (NMD) such as neu- We remind the challenges and benefit of obtaining an ropathy or myopathy are rare and often severe inherited accurate genetic diagnosis, introduce the massively parallel disorders, affecting muscle and/or nerves with neonatal, sequencing technology and its novel applications in diag- childhood or adulthood onset, with considerable burden for nosis of patients, prenatal diagnosis and carrier detection, the patients, their families and public health systems. and discuss the limitations and necessary improvements. Genetic and clinical heterogeneity, unspecific clinical fea- Massively parallel sequencing synergizes with clinical and tures, unidentified genes and the implication of large and/or pathological investigations into an integrated diagnosis several genes requiring complementary methods are the approach. Clinicians and pathologists are crucial in patient main drawbacks in routine molecular diagnosis, leading to selection and interpretation of data, and persons trained in increased turnaround time and delay in the molecular data management and analysis need to be integrated to the validation of the diagnosis. The application of massively diagnosis pipeline. Massively parallel sequencing for parallel sequencing, also called next generation sequenc- mutation identification is expected to greatly improve ing, as a routine diagnostic strategy could lead to a rapid diagnosis, genetic counseling and patient management. screening and fast identification of mutations in rare genetic disorders like NMD. -
Versican Upregulation in SÉZary Cells Alters
Leukemia (2015) 29, 2024–2032 © 2015 Macmillan Publishers Limited All rights reserved 0887-6924/15 www.nature.com/leu ORIGINAL ARTICLE Versican upregulation in Sézary cells alters growth, motility and resistance to chemotherapy K Fujii1,3, MB Karpova1,4, K Asagoe1,5, O Georgiev2, R Dummer1 and M Urosevic-Maiwald1 Sézary syndrome (SéS) represents a leukemic variant of cutaneous T-cell lymphoma, whose etiology is still unknown. To identify dyregulated genes in SéS, we performed transcriptional profiling of Sézary cells (SCs) obtained from peripheral blood of patients with SéS. We identified versican as the highest upregulated gene in SCs. VCAN is an extracellular matrix proteoglycan, which is known to interfere with different cellular processes in cancer. Versican isoform V1 was the most commonly upregulated isoform in SCs. Using a lentiviral plasmid, we overexpressed versican V1 isoform in lymphoid cell lines, which altered their growth behavior by promoting formation of smaller cell clusters and by increasing their migratory capacity towards stromal cell-derived factor 1, thus promoting skin homing. Versican V1 overexpression exerted an inhibitory effect on cell proliferation, partially by promoting activation-induced cell death. Furthermore, V1 overexpression in lymphoid cell lines increased their sensitivity to doxorubicin and gemcitabine. In conclusion, we confirm versican as one of the dysregulated genes in SéS and describe its effects on the biology of SCs. Although versican overexpression confers lymphoid cells with increased migratory capacity, it also makes them more sensitive to activation-induced cell death and some chemotherapeutics, which could be exploited further for therapeutic purposes. Leukemia (2015) 29, 2024–2032; doi:10.1038/leu.2015.103 INTRODUCTION In this study, we identified versican as one of the highest Sézary syndrome (SéS), a leukemic variant of cutaneous T-cell upregulated genes in SCs using high-throughput gene expression lymphoma (CTCL), is characterized by erythroderma, generalized profiling. -
Perineuronal Nets and Metal Cation Concentrations in The
biomolecules Review Perineuronal Nets and Metal Cation Concentrations in the Microenvironments of Fast-Spiking, Parvalbumin-Expressing GABAergic Interneurons: Relevance to Neurodevelopment and Neurodevelopmental Disorders Jessica A. Burket 1, Jason D. Webb 1 and Stephen I. Deutsch 2,* 1 Department of Molecular Biology & Chemistry, Christopher Newport University, Newport News, VA 23606, USA; [email protected] (J.A.B.); [email protected] (J.D.W.) 2 Department of Psychiatry and Behavioral Sciences, Eastern Virginia Medical School, 825 Fairfax Avenue, Suite 710, Norfolk, VA 23507, USA * Correspondence: [email protected]; Tel.: +1-757-446-5888 Abstract: Because of their abilities to catalyze generation of toxic free radical species, free concen- trations of the redox reactive metals iron and copper are highly regulated. Importantly, desired neurobiological effects of these redox reactive metal cations occur within very narrow ranges of their local concentrations. For example, synaptic release of free copper acts locally to modulate NMDA receptor-mediated neurotransmission. Moreover, within the developing brain, iron is criti- cal to hippocampal maturation and the differentiation of parvalbumin-expressing neurons, whose soma and dendrites are surrounded by perineuronal nets (PNNs). The PNNs are a specialized Citation: Burket, J.A.; Webb, J.D.; component of brain extracellular matrix, whose polyanionic character supports the fast-spiking elec- Deutsch, S.I. Perineuronal Nets and trophysiological properties of these parvalbumin-expressing GABAergic interneurons. In addition Metal Cation Concentrations in the to binding cations and creation of the Donnan equilibrium that support the fast-spiking properties Microenvironments of Fast-Spiking, of this subset of interneurons, the complex architecture of PNNs also binds metal cations, which Parvalbumin-Expressing GABAergic may serve a protective function against oxidative damage, especially of these fast-spiking neurons.