Computer Science 433 Programming Languages Topic Notes: Data
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Package 'Pinsplus'
Package ‘PINSPlus’ August 6, 2020 Encoding UTF-8 Type Package Title Clustering Algorithm for Data Integration and Disease Subtyping Version 2.0.5 Date 2020-08-06 Author Hung Nguyen, Bang Tran, Duc Tran and Tin Nguyen Maintainer Hung Nguyen <[email protected]> Description Provides a robust approach for omics data integration and disease subtyping. PIN- SPlus is fast and supports the analysis of large datasets with hundreds of thousands of sam- ples and features. The software automatically determines the optimal number of clus- ters and then partitions the samples in a way such that the results are ro- bust against noise and data perturbation (Nguyen et.al. (2019) <DOI: 10.1093/bioinformat- ics/bty1049>, Nguyen et.al. (2017)<DOI: 10.1101/gr.215129.116>). License LGPL Depends R (>= 2.10) Imports foreach, entropy , doParallel, matrixStats, Rcpp, RcppParallel, FNN, cluster, irlba, mclust RoxygenNote 7.1.0 Suggests knitr, rmarkdown, survival, markdown LinkingTo Rcpp, RcppArmadillo, RcppParallel VignetteBuilder knitr NeedsCompilation yes Repository CRAN Date/Publication 2020-08-06 21:20:02 UTC R topics documented: PINSPlus-package . .2 AML2004 . .2 KIRC ............................................3 PerturbationClustering . .4 SubtypingOmicsData . .9 1 2 AML2004 Index 13 PINSPlus-package Perturbation Clustering for data INtegration and disease Subtyping Description This package implements clustering algorithms proposed by Nguyen et al. (2017, 2019). Pertur- bation Clustering for data INtegration and disease Subtyping (PINS) is an approach for integraton of data and classification of diseases into various subtypes. PINS+ provides algorithms support- ing both single data type clustering and multi-omics data type. PINSPlus is an improved version of PINS by allowing users to customize the based clustering algorithm and perturbation methods. -
Customizing and Extending Powerdesigner SAP Powerdesigner Documentation Collection Content
User Guide PUBLIC SAP PowerDesigner Document Version: 16.6.2 – 2017-01-05 Customizing and Extending PowerDesigner SAP PowerDesigner Documentation Collection Content 1 PowerDesigner Resource Files.................................................... 9 1.1 Opening Resource Files in the Editor.................................................10 1.2 Navigating and Searching in Resource Files............................................ 11 1.3 Editing Resource Files........................................................... 13 1.4 Saving Changes................................................................13 1.5 Sharing and Embedding Resource Files...............................................13 1.6 Creating and Copying Resource Files.................................................14 1.7 Specifying Directories to Search for Resource Files.......................................15 1.8 Comparing Resource Files........................................................ 15 1.9 Merging Resource Files.......................................................... 16 2 Extension Files................................................................18 2.1 Creating an Extension File.........................................................19 2.2 Attaching Extensions to a Model....................................................20 2.3 Exporting an Embedded Extension File for Sharing.......................................21 2.4 Extension File Properties......................................................... 21 2.5 Example: Adding a New Attribute from a Property -
Create Union Variables Difference Between Unions and Structures
Union is a user-defined data type similar to a structure in C programming. How to define a union? We use union keyword to define unions. Here's an example: union car { char name[50]; int price; }; The above code defines a user define data type union car. Create union variables When a union is defined, it creates a user-define type. However, no memory is allocated. To allocate memory for a given union type and work with it, we need to create variables. Here's how we create union variables: union car { char name[50]; int price; } car1, car2, *car3; In both cases, union variables car1, car2, and a union pointer car3 of union car type are created. How to access members of a union? We use . to access normal variables of a union. To access pointer variables, we use ->operator. In the above example, price for car1 can be accessed using car1.price price for car3 can be accessed using car3->price Difference between unions and structures Let's take an example to demonstrate the difference between unions and structures: #include <stdio.h> union unionJob { //defining a union char name[32]; float salary; int workerNo; } uJob; struct structJob { char name[32]; float salary; int workerNo; } sJob; main() { printf("size of union = %d bytes", sizeof(uJob)); printf("\nsize of structure = %d bytes", sizeof(sJob)); } Output size of union = 32 size of structure = 40 Why this difference in size of union and structure variables? The size of structure variable is 40 bytes. It's because: size of name[32] is 32 bytes size of salary is 4 bytes size of workerNo is 4 bytes However, the size of union variable is 32 bytes. -
PL/SQL Data Types
PPLL//SSQQLL -- DDAATTAA TTYYPPEESS http://www.tutorialspoint.com/plsql/plsql_data_types.htm Copyright © tutorialspoint.com PL/SQL variables, constants and parameters must have a valid data type, which specifies a storage format, constraints, and valid range of values. This tutorial will take you through SCALAR and LOB data types available in PL/SQL and other two data types will be covered in other chapters. Category Description Scalar Single values with no internal components, such as a NUMBER, DATE, or BOOLEAN. Large Object LOB Pointers to large objects that are stored separately from other data items, such as text, graphic images, video clips, and sound waveforms. Composite Data items that have internal components that can be accessed individually. For example, collections and records. Reference Pointers to other data items. PL/SQL Scalar Data Types and Subtypes PL/SQL Scalar Data Types and Subtypes come under the following categories: Date Type Description Numeric Numeric values on which arithmetic operations are performed. Character Alphanumeric values that represent single characters or strings of characters. Boolean Logical values on which logical operations are performed. Datetime Dates and times. PL/SQL provides subtypes of data types. For example, the data type NUMBER has a subtype called INTEGER. You can use subtypes in your PL/SQL program to make the data types compatible with data types in other programs while embedding PL/SQL code in another program, such as a Java program. PL/SQL Numeric Data Types and Subtypes Following -
Lecture 2: Variables and Primitive Data Types
Lecture 2: Variables and Primitive Data Types MIT-AITI Kenya 2005 1 In this lecture, you will learn… • What a variable is – Types of variables – Naming of variables – Variable assignment • What a primitive data type is • Other data types (ex. String) MIT-Africa Internet Technology Initiative 2 ©2005 What is a Variable? • In basic algebra, variables are symbols that can represent values in formulas. • For example the variable x in the formula f(x)=x2+2 can represent any number value. • Similarly, variables in computer program are symbols for arbitrary data. MIT-Africa Internet Technology Initiative 3 ©2005 A Variable Analogy • Think of variables as an empty box that you can put values in. • We can label the box with a name like “Box X” and re-use it many times. • Can perform tasks on the box without caring about what’s inside: – “Move Box X to Shelf A” – “Put item Z in box” – “Open Box X” – “Remove contents from Box X” MIT-Africa Internet Technology Initiative 4 ©2005 Variables Types in Java • Variables in Java have a type. • The type defines what kinds of values a variable is allowed to store. • Think of a variable’s type as the size or shape of the empty box. • The variable x in f(x)=x2+2 is implicitly a number. • If x is a symbol representing the word “Fish”, the formula doesn’t make sense. MIT-Africa Internet Technology Initiative 5 ©2005 Java Types • Integer Types: – int: Most numbers you’ll deal with. – long: Big integers; science, finance, computing. – short: Small integers. -
Chapter 4 Variables and Data Types
PROG0101 Fundamentals of Programming PROG0101 FUNDAMENTALS OF PROGRAMMING Chapter 4 Variables and Data Types 1 PROG0101 Fundamentals of Programming Variables and Data Types Topics • Variables • Constants • Data types • Declaration 2 PROG0101 Fundamentals of Programming Variables and Data Types Variables • A symbol or name that stands for a value. • A variable is a value that can change. • Variables provide temporary storage for information that will be needed during the lifespan of the computer program (or application). 3 PROG0101 Fundamentals of Programming Variables and Data Types Variables Example: z = x + y • This is an example of programming expression. • x, y and z are variables. • Variables can represent numeric values, characters, character strings, or memory addresses. 4 PROG0101 Fundamentals of Programming Variables and Data Types Variables • Variables store everything in your program. • The purpose of any useful program is to modify variables. • In a program every, variable has: – Name (Identifier) – Data Type – Size – Value 5 PROG0101 Fundamentals of Programming Variables and Data Types Types of Variable • There are two types of variables: – Local variable – Global variable 6 PROG0101 Fundamentals of Programming Variables and Data Types Types of Variable • Local variables are those that are in scope within a specific part of the program (function, procedure, method, or subroutine, depending on the programming language employed). • Global variables are those that are in scope for the duration of the programs execution. They can be accessed by any part of the program, and are read- write for all statements that access them. 7 PROG0101 Fundamentals of Programming Variables and Data Types Types of Variable MAIN PROGRAM Subroutine Global Variables Local Variable 8 PROG0101 Fundamentals of Programming Variables and Data Types Rules in Naming a Variable • There a certain rules in naming variables (identifier). -
Data Structures, Buffers, and Interprocess Communication
Data Structures, Buffers, and Interprocess Communication We’ve looked at several examples of interprocess communication involving the transfer of data from one process to another process. We know of three mechanisms that can be used for this transfer: - Files - Shared Memory - Message Passing The act of transferring data involves one process writing or sending a buffer, and another reading or receiving a buffer. Most of you seem to be getting the basic idea of sending and receiving data for IPC… it’s a lot like reading and writing to a file or stdin and stdout. What seems to be a little confusing though is HOW that data gets copied to a buffer for transmission, and HOW data gets copied out of a buffer after transmission. First… let’s look at a piece of data. typedef struct { char ticker[TICKER_SIZE]; double price; } item; . item next; . The data we want to focus on is “next”. “next” is an object of type “item”. “next” occupies memory in the process. What we’d like to do is send “next” from processA to processB via some kind of IPC. IPC Using File Streams If we were going to use good old C++ filestreams as the IPC mechanism, our code would look something like this to write the file: // processA is the sender… ofstream out; out.open(“myipcfile”); item next; strcpy(next.ticker,”ABC”); next.price = 55; out << next.ticker << “ “ << next.price << endl; out.close(); Notice that we didn’t do this: out << next << endl; Why? Because the “<<” operator doesn’t know what to do with an object of type “item”. -
The Art of the Javascript Metaobject Protocol
The Art Of The Javascript Metaobject Protocol enough?Humphrey Ephraim never recalculate remains giddying: any precentorship she expostulated exasperated her nuggars west, is brocade Gus consultative too around-the-clock? and unbloody If dog-cheapsycophantical and or secularly, norman Partha how slicked usually is volatilisingPenrod? his nomadism distresses acceptedly or interlacing Card, and send an email to a recipient with. On Auslegung auf are Schallabstrahlung download the Aerodynamik von modernen Flugtriebwerken. This poll i send a naming convention, the art of metaobject protocol for the corresponding to. What might happen, for support, if you should load monkeypatched code in one ruby thread? What Hooks does Ruby have for Metaprogramming? Sass, less, stylus, aura, etc. If it finds one, it calls that method and passes itself as value object. What bin this optimization achieve? JRuby and the psd. Towards a new model of abstraction in software engineering. Buy Online in Aruba at aruba. The current run step approach is: Checkpoint. Python object room to provide usable string representations of hydrogen, one used for debugging and logging, another for presentation to end users. Method handles can we be used to implement polymorphic inline caches. Mop is not the metaobject? Rails is a nicely designed web framework. Get two FREE Books of character Moment sampler! The download the number IS still thought. This proxy therefore behaves equivalently to the card dispatch function, and no methods will be called on the proxy dispatcher before but real dispatcher is available. While desertcart makes reasonable efforts to children show products available in your kid, some items may be cancelled if funny are prohibited for import in Aruba. -
Julia's Efficient Algorithm for Subtyping Unions and Covariant
Julia’s Efficient Algorithm for Subtyping Unions and Covariant Tuples Benjamin Chung Northeastern University, Boston, MA, USA [email protected] Francesco Zappa Nardelli Inria of Paris, Paris, France [email protected] Jan Vitek Northeastern University, Boston, MA, USA Czech Technical University in Prague, Czech Republic [email protected] Abstract The Julia programming language supports multiple dispatch and provides a rich type annotation language to specify method applicability. When multiple methods are applicable for a given call, Julia relies on subtyping between method signatures to pick the correct method to invoke. Julia’s subtyping algorithm is surprisingly complex, and determining whether it is correct remains an open question. In this paper, we focus on one piece of this problem: the interaction between union types and covariant tuples. Previous work normalized unions inside tuples to disjunctive normal form. However, this strategy has two drawbacks: complex type signatures induce space explosion, and interference between normalization and other features of Julia’s type system. In this paper, we describe the algorithm that Julia uses to compute subtyping between tuples and unions – an algorithm that is immune to space explosion and plays well with other features of the language. We prove this algorithm correct and complete against a semantic-subtyping denotational model in Coq. 2012 ACM Subject Classification Theory of computation → Type theory Keywords and phrases Type systems, Subtyping, Union types Digital Object Identifier 10.4230/LIPIcs.ECOOP.2019.24 Category Pearl Supplement Material ECOOP 2019 Artifact Evaluation approved artifact available at https://dx.doi.org/10.4230/DARTS.5.2.8 Acknowledgements The authors thank Jiahao Chen for starting us down the path of understanding Julia, and Jeff Bezanson for coming up with Julia’s subtyping algorithm. -
Bits, Bytes and Integers ‘
Bits, Bytes and Integers ‘- Karthik Dantu Ethan Blanton Computer Science and Engineering University at Buffalo [email protected] 1 Karthik Dantu Administrivia • PA1 due this Friday – test early and often! We cannot help everyone on Friday! Don’t expect answers on Piazza into the night and early morning • Avoid using actual numbers (80, 24 etc.) – use macros! • Lab this week is on testing ‘- • Programming best practices • Lab Exam – four students have already failed class! Lab exams are EXAMS – no using the Internet, submitting solutions from dorm, home Please don’t give code/exam to friends – we will know! 2 Karthik Dantu Everything is Bits • Each bit is 0 or 1 • By encoding/interpreting sets of bits in various ways Computers determine what to do (instructions) … and represent and manipulate numbers, sets, strings, etc… • Why bits? Electronic Implementation‘- Easy to store with bistable elements Reliably transmitted on noisy and inaccurate wires 0 1 0 1.1V 0.9V 0.2V 0.0V 3 Karthik Dantu Memory as Bytes • To the computer, memory is just bytes • Computer doesn’t know data types • Modern processor can only manipulate: Integers (Maybe only single bits) Maybe floating point numbers ‘- … repeat ! • Everything else is in software 4 Karthik Dantu Reminder: Computer Architecture ‘- 5 Karthik Dantu Buses • Each bus has a width, which is literally the number of wires it has • Each wire transmits one bit per transfer • Each bus transfer is of that width, though some bits might be ignored • Therefore, memory has a word size from‘-the viewpoint of -
Does Personality Matter? Temperament and Character Dimensions in Panic Subtypes
325 Arch Neuropsychiatry 2018;55:325−329 RESEARCH ARTICLE https://doi.org/10.5152/npa.2017.20576 Does Personality Matter? Temperament and Character Dimensions in Panic Subtypes Antonio BRUNO1 , Maria Rosaria Anna MUSCATELLO1 , Gianluca PANDOLFO1 , Giulia LA CIURA1 , Diego QUATTRONE2 , Giuseppe SCIMECA1 , Carmela MENTO1 , Rocco A. ZOCCALI1 1Department of Psychiatry, University of Messina, Messina, Italy 2MRC Social, Genetic & Developmental Psychiatry Centre, Institute of Psychiatry, Psychology & Neuroscience, London, United Kingdom ABSTRACT Introduction: Symptomatic heterogeneity in the clinical presentation of and 12.78% of the total variance. Correlations analyses showed that Panic Disorder (PD) has lead to several attempts to identify PD subtypes; only “Somato-dissociative” factor was significantly correlated with however, no studies investigated the association between temperament T.C.I. “Self-directedness” (p<0.0001) and “Cooperativeness” (p=0.009) and character dimensions and PD subtypes. The study was aimed to variables. Results from the regression analysis indicate that the predictor verify whether personality traits were differentially related to distinct models account for 33.3% and 24.7% of the total variance respectively symptom dimensions. in “Somatic-dissociative” (p<0.0001) and “Cardiologic” (p=0.007) factors, while they do not show statistically significant effects on “Respiratory” Methods: Seventy-four patients with PD were assessed by the factor (p=0.222). After performing stepwise regression analysis, “Self- Mini-International Neuropsychiatric Interview (M.I.N.I.), and the directedness” resulted the unique predictor of “Somato-dissociative” Temperament and Character Inventory (T.C.I.). Thirteen panic symptoms factor (R²=0.186; β=-0.432; t=-4.061; p<0.0001). from the M.I.N.I. -
Boolean Data Type & Expressions Outline Basic Data Types
Boolean Data Type & Expressions Outline Basic Data Types 1. Boolean Data Type & Expressions Outline Numeric 2. Basic Data Types – int 3. C Boolean Data Types: char or int/ – float Boolean Declaration Non-numeric 4. Boolean or Character? – char 5. Boolean Literal Constants #include <stdio.h> 6. Boolean Expressions/ int main () Boolean Operations ¡ /* main */ 7. Example: Boolean Literal Constants & Expressions float standard_deviation, relative_humidity; int count, number_of_silly_people; 8. Example: Boolean Variables char middle_initial, hometown[30]; ¢ 9. Relational Operations /* main */ 10. Example: Relational Expressions 11. Structure of Boolean Expressions 12. Precedence Order of Boolean Operations 13. Another Boolean Precedence Example 14. Example: Boolean Precedence Order 15. Example: More Relational Expressions 16. Example: More Relational Expressions (continued) 17. Short Circuiting 18. Exercise: Writing a Program 1 2 C Boolean Data Type: char or int Boolean or Character? The C data type typically used for storing Boolean values is char, Question: How does the C compiler know that a particular char although int will also work. declaration is a Boolean rather than a character? Like numeric data types, Booleans have particular ways of being Answer: It doesn’t. stored in memory and of being operated on. % cat shortcircuit.c #include <stdio.h> Conceptually, a Boolean value represents a single bit in memory, char int int main () although the and data types aren’t implemented this ¡ /* main */ way — if for no other reason than that computers can’t address a const int maximum_short_height_in_cm = 170; single bit, since the smallest collection of bits that they can address int my_height_in_cm = 160; char I_am_Henry = 1; is a byte (or, in a few cases, a word).