Characterization of Putative Pathogenic Shewanella Algae Isolated from Ballast Water
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Antibacterial Activity and Mechanism of Linalool Against Shewanella Putrefaciens
molecules Article Antibacterial Activity and Mechanism of Linalool against Shewanella putrefaciens Fengyu Guo 1,2,3, Qiong Liang 1, Ming Zhang 1, Wenxue Chen 1,2,3, Haiming Chen 1,2,3 , Yonghuan Yun 1,2,3 , Qiuping Zhong 1,2,3,* and Weijun Chen 1,2,3,* 1 College of Food Science and Technology, Hainan University, Haikou 570228, China; [email protected] (F.G.); [email protected] (Q.L.); [email protected] (M.Z.); [email protected] (W.C.); [email protected] (H.C.); [email protected] (Y.Y.) 2 Key Laboratory of Food Nutrition and Functional Food of Hainan Province, Haikou 570228, China 3 Hainan Provincial Engineering Research Center of Aquatic Resources Efficient Utilization in the South China Sea, Haikou 570228, China * Correspondence: [email protected] (Q.Z.); [email protected] (W.C.) Abstract: The demand for reduced chemical preservative usage is currently growing, and natural preservatives are being developed to protect seafood. With its excellent antibacterial properties, linalool has been utilized widely in industries. However, its antibacterial mechanisms remain poorly studied. Here, untargeted metabolomics was applied to explore the mechanism of Shewanella putrefaciens cells treated with linalool. Results showed that linalool exhibited remarkable antibacterial activity against S. putrefaciens, with 1.5 µL/mL minimum inhibitory concentration (MIC). The growth of S. putrefaciens was suppressed completely at 1/2 MIC and 1 MIC levels. Linalool treatment reduced the membrane potential (MP); caused the leakage of alkaline phosphatase (AKP); and released the DNA, RNA, and proteins of S. putrefaciens, thus destroying the cell structure and expelling the cytoplasmic content. -
Microbial Identification Framework for Risk Assessment
Microbial Identification Framework for Risk Assessment May 2017 Cat. No.: En14-317/2018E-PDF ISBN 978-0-660-24940-7 Information contained in this publication or product may be reproduced, in part or in whole, and by any means, for personal or public non-commercial purposes, without charge or further permission, unless otherwise specified. You are asked to: • Exercise due diligence in ensuring the accuracy of the materials reproduced; • Indicate both the complete title of the materials reproduced, as well as the author organization; and • Indicate that the reproduction is a copy of an official work that is published by the Government of Canada and that the reproduction has not been produced in affiliation with or with the endorsement of the Government of Canada. Commercial reproduction and distribution is prohibited except with written permission from the author. For more information, please contact Environment and Climate Change Canada’s Inquiry Centre at 1-800-668-6767 (in Canada only) or 819-997-2800 or email to [email protected]. © Her Majesty the Queen in Right of Canada, represented by the Minister of the Environment and Climate Change, 2016. Aussi disponible en français Microbial Identification Framework for Risk Assessment Page 2 of 98 Summary The New Substances Notification Regulations (Organisms) (the regulations) of the Canadian Environmental Protection Act, 1999 (CEPA) are organized according to organism type (micro- organisms and organisms other than micro-organisms) and by activity. The Microbial Identification Framework for Risk Assessment (MIFRA) provides guidance on the required information for identifying micro-organisms. This document is intended for those who deal with the technical aspects of information elements or information requirements of the regulations that pertain to identification of a notified micro-organism. -
Electrochemical Interaction of Shewanella Oneidensis MR-1 and Its Outer Membrane Cytochromes Omca and Mtrc with Hematite Electrodes
Available online at www.sciencedirect.com Geochimica et Cosmochimica Acta 73 (2009) 5292–5307 www.elsevier.com/locate/gca Electrochemical interaction of Shewanella oneidensis MR-1 and its outer membrane cytochromes OmcA and MtrC with hematite electrodes Leisa A. Meitl a, Carrick M. Eggleston a,*, Patricia J.S. Colberg b, Nidhi Khare a, Catherine L. Reardon c, Liang Shi c a Department of Geology and Geophysics, University of Wyoming, Laramie, WY 82071, USA b Department of Civil and Architectural Engineering, University of Wyoming, Laramie, WY 82071, USA c Microbiology Group, Pacific Northwest National Laboratory, P.O. Box 999, MSIN: P7-50, Richland, WA 99354, USA Received 27 December 2008; accepted in revised form 15 June 2009; available online 28 June 2009 Abstract Bacterial metal reduction is an important biogeochemical process in anaerobic environments. An understanding of elec- tron transfer pathways from dissimilatory metal-reducing bacteria (DMRB) to solid phase metal (hydr)oxides is important for understanding metal redox cycling in soils and sediments, for utilizing DMRB in bioremedation, and for developing tech- nologies such as microbial fuel cells. Here we hypothesize that the outer membrane cytochromes OmcA and MtrC from Shewanella oneidensis MR-1 are the only terminal reductases capable of direct electron transfer to a hematite working elec- trode. Cyclic voltammetry (CV) was used to study electron transfer between hematite electrodes and protein films, S. oneid- ensis MR-1 wild-type cell suspensions, and cytochrome deletion mutants. After controlling for hematite electrode dissolution at negative potential, the midpoint potentials of adsorbed OmcA and MtrC were measured (À201 mV and À163 mV vs. -
Identification of the Specific Spoilage Organism in Farmed Sturgeon
foods Article Identification of the Specific Spoilage Organism in Farmed Sturgeon (Acipenser baerii) Fillets and Its Associated Quality and Flavour Change during Ice Storage Zhichao Zhang 1,2,†, Ruiyun Wu 1,† , Meng Gui 3, Zhijie Jiang 4 and Pinglan Li 1,* 1 Beijing Laboratory for Food Quality and Safety, College of Food Science and Nutritional Engineering, China Agricultural University, Beijing 100083, China; [email protected] (Z.Z.); [email protected] (R.W.) 2 Jiangxi Institute of Food Inspection and Testing, Nanchang 330001, China 3 Beijing Fisheries Research Institute, Beijing 100083, China; [email protected] 4 NMPA Key Laboratory for Research and Evaluation of Generic Drugs, Beijing Institute for Drug Control, Beijing 102206, China; [email protected] * Correspondence: [email protected]; Tel.: +86-10-6273-8678 † The authors contributed equally to this work. Abstract: Hybrid sturgeon, a popular commercial fish, plays important role in the aquaculture in China, while its spoilage during storage significantly limits the commercial value. In this study, the specific spoilage organisms (SSOs) from ice stored-sturgeon fillet were isolated and identified by analyzing their spoilage related on sensory change, microbial growth, and biochemical properties, including total volatile base nitrogen (TVBN), thiobarbituric acid reactive substances (TBARS), and proteolytic degradation. In addition, the effect of the SSOs on the change of volatile flavor compounds was evaluated by solid phase microextraction (SPME) and gas chromatography-mass spectrometry (GC-MS). The results showed that the Pseudomonas fluorescens, Pseudomonas mandelii, Citation: Zhang, Z.; Wu, R.; Gui, M.; and Shewanella putrefaciens were the main SSOs in the ice stored-sturgeon fillet, and significantly affect Jiang, Z.; Li, P. -
DOE-ERSP PI MEETING 2007 Abstracts
DOE-ERSP PI MEETING: Abstracts April 16–19, 2007 Lansdowne, Virginia Environmental Remediation Sciences Program (ERSP) This work was supported by the Office of Science, Biological and Environmental Research, Environmental Remediation Sciences Division (ERSD), U.S. Department of Energy under Contract No. DE-AC02-05CH11231. Table of Contents Introduction.............................................................................................................................5 ERSP Contacts.......................................................................................................................7 ERSP Annual PI Meeting Preliminary Agenda .......................................................................9 ABSTRACTS .......................................................................................................................13 GENERAL ERSP ABSTRACTS.......................................................................................15 Allen-King ......................................................................................................................17 Apel ...............................................................................................................................18 Baer...............................................................................................................................19 Baldwin..........................................................................................................................20 Bargar............................................................................................................................21 -
The Physiological Role and Characterization of Melanin Produced by Shewanella Algae Bry
University of New Hampshire University of New Hampshire Scholars' Repository Doctoral Dissertations Student Scholarship Spring 2001 The physiological role and characterization of melanin produced by Shewanella algae BrY Charles Edwin Turick University of New Hampshire, Durham Follow this and additional works at: https://scholars.unh.edu/dissertation Recommended Citation Turick, Charles Edwin, "The physiological role and characterization of melanin produced by Shewanella algae BrY" (2001). Doctoral Dissertations. 28. https://scholars.unh.edu/dissertation/28 This Dissertation is brought to you for free and open access by the Student Scholarship at University of New Hampshire Scholars' Repository. It has been accepted for inclusion in Doctoral Dissertations by an authorized administrator of University of New Hampshire Scholars' Repository. For more information, please contact [email protected]. INFORMATION TO USERS This manuscript has been reproduced from the microfilm master. UMI films the text directly from the original or copy submitted. Thus, some thesis and dissertation copies are in typewriter face, while others may be from any type of computer printer. The quality of this reproduction is dependent upon the quality of the copy submitted. Broken or indistinct print, colored or poor quality illustrations and photographs, print bleedthrough, substandard margins, and improper alignment can adversely affect reproduction. In the unlikely event that the author did not send UMI a complete manuscript and there are missing pages, these will be noted. Also, if unauthorized copyright material had to be removed, a note will indicate the deletion. Oversize materials (e.g., maps, drawings, charts) are reproduced by sectioning the original, beginning at the upper left-hand comer and continuing from left to right in equal sections with small overlaps. -
Culture Independent Analysis of Microbiota in the Gut of Pine Weevils
Culture independent analysis of microbiota in the gut of pine weevils KTH Biotechnology 2013-January-13 Diploma work by: Tobias B. Ölander Environmental Microbiology, KTH Supervisor: Associate prof. Gunaratna K. Rajarao Examinator: Prof. Stefan Ståhl 1 Abstract In Sweden, the pine weevil causes damages for several hundreds of millions kronor annually. The discouraged use of insecticides has resulted in that other methods to prevent pine weevil feeding needs to be found. Antifeedants found in the pine weevil own feces is one such alternative. The source of the most active antifeedants in the feces is probably from bacterial or fungal lignin degrading symbionts in the pine weevil gut. The aim of the project was to analyze the pine weevil gut microbiota with the help of culture independent methods. DNA (including bacterial DNA) was extracted from both midgut and egg cells. The extracted DNA was amplified with PCR. A clone library was created by cloning the amplified DNA into plasmid vectors and transforming the vector constructs with chemically competent cells. The clones were amplified again with either colony PCR or plasmid extraction followed by PCR, and used for RFLP (Restriction Fragment Length Polymorphism) and sequencing. Species found in the midgut sample included Acinetobacter sp., Ramlibacter sp., Chryseobacterium sp., Flavisolibacter sp. and Wolbachia sp. Species found in the egg sample included Wolbachia sp. and Halomonas sp. Wolbachia sp. and Halomonas sp. were found to be the dominant members of the midgut and egg cells respectively. -
Diversity and Composition of the Skin, Blood and Gut Microbiome in Rosacea—A Systematic Review of the Literature
microorganisms Review Diversity and Composition of the Skin, Blood and Gut Microbiome in Rosacea—A Systematic Review of the Literature Klaudia Tutka, Magdalena Zychowska˙ and Adam Reich * Department of Dermatology, Institute of Medical Sciences, Medical College of Rzeszow University, 35-055 Rzeszow, Poland; [email protected] (K.T.); [email protected] (M.Z.)˙ * Correspondence: [email protected]; Tel.: +48-605076722 Received: 30 August 2020; Accepted: 6 November 2020; Published: 8 November 2020 Abstract: Rosacea is a chronic inflammatory skin disorder of a not fully understood pathophysiology. Microbial factors, although not precisely characterized, are speculated to contribute to the development of the condition. The aim of the current review was to summarize the rosacea-associated alterations in the skin, blood, and gut microbiome, investigated using culture-independent, metagenomic techniques. A systematic review of the PubMed, Web of Science, and Scopus databases was performed, according to PRISMA (preferred reporting items for systematic review and meta-analyses) guidelines. Nine out of 185 papers were eligible for analysis. Skin microbiome was investigated in six studies, and in a total number of 115 rosacea patients. Blood microbiome was the subject of one piece of research, conducted in 10 patients with rosacea, and gut microbiome was studied in two papers, and in a total of 23 rosacea subjects. Although all of the studies showed significant alterations in the composition of the skin, blood, or gut microbiome in rosacea, the results were highly inconsistent, or even, in some cases, contradictory. Major limitations included the low number of participants, and different study populations (mainly Asians). Further studies are needed in order to reliably analyze the composition of microbiota in rosacea, and the potential application of microbiome modifications for the treatment of this dermatosis. -
Bacterial Community Structure in a Sympagic Habitat Expanding with Global Warming: Brackish Ice Brine at 85€“90 °N
The ISME Journal (2019) 13:316–333 https://doi.org/10.1038/s41396-018-0268-9 ARTICLE Bacterial community structure in a sympagic habitat expanding with global warming: brackish ice brine at 85–90 °N 1,11 1,2 3 4 5,8 Beatriz Fernández-Gómez ● Beatriz Díez ● Martin F. Polz ● José Ignacio Arroyo ● Fernando D. Alfaro ● 1 1 2,6 5 4,7 Germán Marchandon ● Cynthia Sanhueza ● Laura Farías ● Nicole Trefault ● Pablo A. Marquet ● 8,9 10 10 Marco A. Molina-Montenegro ● Peter Sylvander ● Pauline Snoeijs-Leijonmalm Received: 12 February 2018 / Revised: 11 June 2018 / Accepted: 24 July 2018 / Published online: 18 September 2018 © International Society for Microbial Ecology 2018 Abstract Larger volumes of sea ice have been thawing in the Central Arctic Ocean (CAO) during the last decades than during the past 800,000 years. Brackish brine (fed by meltwater inside the ice) is an expanding sympagic habitat in summer all over the CAO. We report for the first time the structure of bacterial communities in this brine. They are composed of psychrophilic extremophiles, many of them related to phylotypes known from Arctic and Antarctic regions. Community structure displayed strong habitat segregation between brackish ice brine (IB; salinity 2.4–9.6) and immediate sub-ice seawater (SW; – 1234567890();,: 1234567890();,: salinity 33.3 34.9), expressed at all taxonomic levels (class to genus), by dominant phylotypes as well as by the rare biosphere, and with specialists dominating IB and generalists SW. The dominant phylotypes in IB were related to Candidatus Aquiluna and Flavobacterium, those in SW to Balneatrix and ZD0405, and those shared between the habitats to Halomonas, Polaribacter and Shewanella. -
Shewanella Putrefaciens – a New Opportunistic Pathogen of Freshwater Fish
J Vet Res 60, 429-434, 2016 DE DE GRUYTER OPEN DOI: 10.1515/jvetres-2016-0064 G REVIEW ARTICLE Shewanella putrefaciens – a new opportunistic pathogen of freshwater fish Ewa Paździor Department of Fish Diseases, National Veterinary Research Institute, 24-100 Pulawy, Poland [email protected] Received: May 17, 2016 Accepted: August 31, 2016 Abstract In recent years, Shewanella putrefaciens, commonly known as a halophilic bacteria, has been associated with serious health disorders in freshwater fish. Therefore, it has been described as a new aetiological agent of the disease, named shewanellosis. S. putrefaciens is a heterogeneous group of microorganisms, belonging to the Alteromonadaceae family. Based on different criteria, three biovars and biogroups as well as four genomic groups have been distinguished. The first infections of S. putrefaciens in fish were reported in rabbitfish (Siganus rivulatus) and European sea bass (Dicentrarchus labrax L.). Outbreaks in farmed fish were reported in Poland for the first time in 2004. The disease causes skin disorders and haemorrhages in internal organs. It should be noted that S. putrefaciens could also be associated with different infections in humans, such as skin and tissue infections, bacteraemia, otitis. Investigations on pathogenic mechanisms of S. putrefaciens infections are very limited. Enzymatic activity, cytotoxin secretion, adhesion ability, lipopolysaccharide (LPS), and the presence of siderophores are potential virulence factors of S. putrefaciens. Antimicrobial resistance of S. putrefaciens is different and depends on the isolates. In general, these bacteria are sensitive to antimicrobial drugs commonly used in aquaculture. Keywords: freshwater fish, Shewanella putrefaciens, pathogenicity, virulence factors. Introduction that S. putrefaciens, considered as halophytic bacteria, has an ability to adapt to freshwater environment. -
Draft Genomic Sequence of a Chromate- and Sulfate-Reducing
Xia et al. Standards in Genomic Sciences (2016) 11:48 DOI 10.1186/s40793-016-0169-3 SHORT GENOME REPORT Open Access Draft genomic sequence of a chromate- and sulfate-reducing Alishewanella strain with the ability to bioremediate Cr and Cd contamination Xian Xia1, Jiahong Li1, Shuijiao Liao1,2, Gaoting Zhou1,2, Hui Wang1, Liqiong Li1, Biao Xu1 and Gejiao Wang1* Abstract Alishewanella sp. WH16-1 (= CCTCC M201507) is a facultative anaerobic, motile, Gram-negative, rod-shaped bacterium isolated from soil of a copper and iron mine. This strain efficiently reduces chromate (Cr6+) to the much 3+ 2− 2− 2− 2+ less toxic Cr . In addition, it reduces sulfate (SO4 )toS . The S could react with Cd to generate precipitated CdS. Thus, strain WH16-1 shows a great potential to bioremediate Cr and Cd contaimination. Here we describe the features of this organism, together with the draft genome and comparative genomic results among strain WH16-1 and other Alishewanella strains. The genome comprises 3,488,867 bp, 50.4 % G + C content, 3,132 protein-coding genes and 80 RNA genes. Both putative chromate- and sulfate-reducing genes are identified. Keywords: Alishewanella, Chromate-reducing bacterium, Sulfate-reducing bacterium, Cadmium, Chromium Abbreviation: PGAP, Prokaryotic Genome Annotation Pipeline Introduction Alishewanella sp. WH16-1 was isolated from mining The genus Alishewanella was established by Vogel et al., soil in 2009. This strain could resist to multiple heavy in 2000 with Alishewanella fetalis as the type species. It metals. During cultivation, it could efficiently reduce the belongs to the family Alteromonadaceae of the class toxic chromate (Cr6+) to the much less toxic and less 3+ 2− Gammaproteobacteria [1]. -
Shewanella Oneidensis MR-1 Uses Overlapping Pathways for Iron Reduction at a Distance and by Direct Contact Under Conditions Relevant for Biofilms Douglas P
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, Aug. 2005, p. 4414–4426 Vol. 71, No. 8 0099-2240/05/$08.00ϩ0 doi:10.1128/AEM.71.8.4414–4426.2005 Copyright © 2005, American Society for Microbiology. All Rights Reserved. Shewanella oneidensis MR-1 Uses Overlapping Pathways for Iron Reduction at a Distance and by Direct Contact under Conditions Relevant for Biofilms Douglas P. Lies,1† Maria E. Hernandez,2† Andreas Kappler,1 Randall E. Mielke,3 Jeffrey A. Gralnick,1 and Dianne K. Newman1,2* Department of Geological and Planetary Sciences1 and Department of Environmental Science & Engineering,2 California Institute of Technology, Pasadena, California 91125, and Jet Propulsion Laboratory, Pasadena, California3 Received 27 May 2004/Accepted 20 February 2005 We developed a new method to measure iron reduction at a distance based on depositing Fe(III) (hydr)oxide within nanoporous glass beads. In this “Fe-bead” system, Shewanella oneidensis reduces at least 86.5% of the iron in the absence of direct contact. Biofilm formation accompanies Fe-bead reduction and is observable both macro- and microscopically. Fe-bead reduction is catalyzed by live cells adapted to anaerobic conditions, and maximal reduction rates require sustained protein synthesis. The amount of reactive ferric iron in the Fe-bead system is available in excess such that the rate of Fe-bead reduction is directly proportional to cell density; i.e., it is diffusion limited. Addition of either lysates prepared from anaerobic cells or exogenous electron shuttles stimulates Fe-bead reduction by S. oneidensis, but iron chelators or additional Fe(II) do not. Neither dissolved Fe(III) nor electron shuttling activity was detected in culture supernatants, implying that the mediator is retained within the biofilm matrix.