RESEARCH ARTICLE POLG2 deficiency causes adult-onset syndromic sensory neuropathy, ataxia and parkinsonism Lionel Van Maldergem1,2, Arnaud Besse3, Boel De Paepe4, Emma L. Blakely5, Vivek Appadurai3, Margaret M. Humble6, Juliette Piard1, Kate Craig5, Langping He5, Pierre Hella7, Francßois-Guillaume Debray2, Jean-Jacques Martin8, Marion Gaussen9,10,11, Patrice Laloux12,13, Giovanni Stevanin9,10,11, Rudy Van Coster4, Robert W. Taylor5, William C. Copeland6, Eric Mormont12,13,a & Penelope E. Bonnen3,a 1Centre de gen etique humaine, Universite de Franche-Comte, Besancßon, France 2Metabolic Unit, Centre of Human Genetics, University Hospital, Liege, Belgium 3Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas 4Department of Pediatrics, Division of Child Neurology & Metabolism, Ghent University Hospital, Belgium 5Wellcome Trust Centre for Mitochondrial Research, Institute of Neuroscience, Newcastle University, Newcastle upon Tyne, United Kingdom 6Mitochondrial DNA Replication Group, National Institute of Environmental Health Sciences, Durham, North Carolina 7Department of Neurology, Sambre and Meuse Regional Hospital, Namur, Belgium 8Born-Bunge Foundation, University of Antwerp, Belgium 9Inserm U1127, CNRS UMR7225, Sorbonne Universites, UPMC, Paris, France 10Institut du Cerveau et de la Moelle epini ere, Hopital Pitie-Salp etri^ ere, Paris, France 11Ecole Pratique des Hautes Etudes, PSL Universite, Laboratoire de neurogen etique, F-75013 Paris, France 12Universite catholique de Louvain, CHU UCL Namur, Department of Neurology, B5530 Yvoir, Belgium 13UCL Institute of Neuroscience (IoNS), B1200 Brussels, Belgium
Correspondence Abstract Penelope E. Bonnen, Department of Objective Molecular and Human Genetics, Baylor : Mitochondrial dysfunction plays a key role in the pathophysiology College of Medicine, One Baylor Plaza, of neurodegenerative disorders such as ataxia and Parkinson’s disease. We Houston, TX 77030. Tel: 713-798-4256; Fax: describe an extended Belgian pedigree where seven individuals presented with 713-798-1167; E-mail: [email protected] adult-onset cerebellar ataxia, axonal peripheral ataxic neuropathy, and tremor, and in variable combination with parkinsonism, seizures, cognitive decline, and Lionel Van Maldergem, Centre de gen etique ophthalmoplegia. We sought to identify the underlying molecular etiology and humaine, Universite de Franche-Comte, Besancßon, France. Tel: +33381219453; Fax: characterize the mitochondrial pathophysiology of this neurological syndrome. Methods +33381218643; : Clinical, neurophysiological, and neuroradiological evaluations were E-mail: [email protected] conducted. Patient muscle and cultured fibroblasts underwent extensive analyses to assess mitochondrial function. Genetic studies including genome-wide Funding Information sequencing were conducted. Results: Hallmarks of mitochondrial dysfunction This work was financially supported by the were present in patients’ tissues including ultrastructural anomalies of mito- Intramural Research Program of the NIH, c National Institute of Environmental Health chondria, mosaic cytochrome oxidase deficiency, and multiple mtDNA dele- Sciences (ES065078 to M.M.H. and W.C.C.), tions. We identified a splice acceptor variant in POLG2, c.970-1G>C, the French National Agency for Research segregating with disease in this family and associated with a concomitant (SPATAX-QUEST project, to GS), the Verum decrease in levels of POLG2 protein in patient cells. Interpretation: This work Foundation (to GS), the European community extends the clinical spectrum of POLG2 deficiency to include an overwhelming, th (7 framework program, Neuromics, adult-onset neurological syndrome that includes cerebellar syndrome, peripheral E12009DD, to GS), and the Investissements neuropathy, tremor, and parkinsonism. We therefore suggest to include POLG2 d’Avenir program ANR-10-IAIHU-06 (to ICM institute). RWT is supported by a Wellcome sequencing in the evaluation of ataxia and sensory neuropathy in adults, espe- Trust Strategic Award (096919Z/11/Z), the cially when it is accompanied by tremor or parkinsonism with white matter dis- Medical Research Council (UK) Centre for ease. The demonstration that deletions of mtDNA resulting from autosomal- Translational Muscle Disease Research dominant POLG2 variant lead to a monogenic neurodegenerative multicompo- (G0601943), The Lily Foundation, and the UK nent syndrome provides further evidence for a major role of mitochondrial dys- NHS Highly Specialised “Rare Mitochondrial function in the pathomechanism of nonsyndromic forms of the component Disorders of Adults and Children” Service. neurodegenerative disorders. Exome sequencing was performed at Baylor-
ª 2016 The Authors. Annals of Clinical and Translational Neurology published by Wiley Periodicals, Inc on behalf of American Neurological Association. 1 This is an open access article under the terms of the Creative Commons Attribution-NonCommercial-NoDerivs License, which permits use and distribution in any medium, provided the original work is properly cited, the use is non-commercial and no modifications or adaptations are made. POLG2 Deficiency Causes Neuropathy, Ataxia, Parkinsonism L. Van Maldergem et al.
Hopkins Center for Mendelian Genomics funded by the NIH National Human Genome Research Institute (U54HG006542). Research reported in this publication was supported by National Institute of Neurological Disorders and Stroke of the National Institutes of Health under award number R01NS08372 to PEB.
Received: 6 June 2016; Revised: 9 August 2016; Accepted: 12 August 2016
doi: 10.1002/acn3.361 aThese authors contributed equally to this work
Introduction We describe a severe neurological syndrome in a large family with cerebellar ataxia, axonal sensory ataxic neu- Mitochondrial dysfunction caused by disturbances of ropathy, and tremor. Some subjects also presented with mtDNA integrity gives rise to a diverse array of neurological, parkinsonism, seizures, cognitive decline, and ophthalmo- neuromuscular, and multisystem disorders. The clonal plegia. Most died within 15 years of onset of clinical expansion of multiple mtDNA deletions is typically associ- symptoms of disease. Genetic studies revealed a POLG2 ated with late-onset primary mitochondrial disease charac- splice acceptor variant segregating with disease, leading to terized by autosomal-dominant progressive external loss of POLG2 protein in patient cells. This work extends ophthalmoplegia (adPEO) as the predominant clinical fea- the clinical spectrum observed with POLG2 disease and ture.1 MtDNA is replicated by the DNA polymerase gamma lends further support for the role of the accumulation of complex, which is composed of a monomeric catalytic sub- mtDNA deletions in neurodegeneration. unit encoded by POLG and a dimeric accessory subunit POLG2 POLG encoded by . Pathogenic variants are a com- Materials and Methods mon cause of primary mitochondrial disorders typically resulting in adPEO, but can also lead to a phenotypic spec- Muscle histopathology and mtDNA analyses trum manifesting variably across brain, muscle, and/or liver (OMIM 157640, 258450, 203700, 613662, and 607459). Cryostat sections (10 lm) were cut from transversely Few families have been reported to have disease due to orientated muscle blocks and subjected to standard histo- variants in POLG2. The first reported case of POLG2 disease logical and histochemical analysis including COX, succi- was documented in a patient with adult-onset autosomal nate dehydrogenase (SDH), and sequential COX-SDH dominant PEO in whom multiple mtDNA deletions were oxidative enzyme reactions. Large-scale mtDNA rear- detected.2 The second identified case of POLG2 disease was a rangements within the major arc were screened by long- patient who developed ptosis at age 30, but not ophthalmo- range PCR to amplify a ~13.0 kb product in wild-type plegia, and proximal and distal myopathy in her late forties. mtDNA (primers: NC_012920.1 chrM:129-110, Muscle biopsy showed clonally expanded multiple mtDNA chrM:3965-3984). The level of deleted mtDNA in individ- deletions.3 This family included a brother who possessed the ual muscle fibers isolated by laser microcapture was same POLG2 variant and showed no signs of disease at age determined by quantitative real-time PCR using the ABI 57, indicating possible incomplete penetrance. Subse- PRISM Step One real-time PCR System (Life Technolo- quently, three cases with pediatric-onset autosomal domi- gies, Paisley, UK) to confirm the presence of clonally nant disease with varying phenotypes have been reported: a expanded mtDNA deletions.5 young adult with disease onset of adPEO in late teens and two unrelated infants presenting with hypotonia, seizures, Whole exome sequencing and bioinformatic and liver disease.4 With only a small number of cases analyses reported, it is clearly evident that POLG2-related disorders display a spectrum of clinical phenotypes with a wide range Whole exome sequencing was performed using Illumina of age of onset. paired-end precapture libraries constructed according to
2 ª 2016 The Authors. Annals of Clinical and Translational Neurology published by Wiley Periodicals, Inc on behalf of American Neurological Association. L. Van Maldergem et al. POLG2 Deficiency Causes Neuropathy, Ataxia, Parkinsonism manufacturer’s protocol. Sequence data were aligned, Results variants were called by GATK, and custom Perl scripts were used to annotate variants as previously described.6 Clinical presentation Multiple metrics for prediction of potential functional consequences of variants were applied: CADD,7 Geno- Seven native Belgian individuals from two sibships belong- mic Evolutionary Rate Profiling (GERP),8 and PhyloP. ing to the same extended family presented with a neurolog- The Exome Aggregation Consortium (ExAC) Cohort ical disorder involving cerebellar and sensory ataxia with was used as reference population data (http:// tremor (Fig. 1). Initial signs of disease rose to clinical atten- exac.broadinstitute.org, accessed January, 2016). All tion between 50 and 77 years of age and in most cases genetic alleles studied were annotated in reference to resulted in loss of life in less than 15 years from onset POLG2 NM_007215. (Table 1). Peripheral neuropathy developed in all individu- als either concomitant with the cerebellar syndrome or manifesting up to 6 years postonset of disease. Additional Western blotting features of disease in some individuals included epilepsy, Fibroblasts were grown in DMEM High Glucose with L-Glu- cognitive decline, ophthalmoplegia, hearing loss, and tamine and Sodium pyruvate (Hyclone, ThermoFisherScien- parkinsonism. An overview of clinical and paraclinical signs tific) with 15% FBS. Crude mitochondrial fraction was is presented in Table 1 and is summarized as follows. prepared from 1 9 107 cells following Graham & Rickwood method.9 Mitochondrial fractions were lysed in RIPA buffer Cerebellar ataxia, sensory neuropathy, and containing 50 mm Tris, pH 8.0, 150 mm NaCl, 0.5% sodium action tremor deoxycholate, 1% Triton X-100, 0.1% SDS, 5 mg/mL leu- peptin, 2 mg/mL aprotinin, and 0.5 mmol/L PMSF. Patient II-1, presented at age 53 with gait disturbances. Thirty milligram of mitochondrial lysates were resolved on He experienced both cerebellar and sensory ataxia, pro- SDS-polyacrylamide gel electrophoresis and transferred to a gressing within 6 years to a loss of ambulation. Addition- 0.45-mm PVDF membrane (Millipore). Western blotting was ally, he experienced head tremor followed closely by an performed as previously described.4 arm tremor that was both intentional and resting. Elec- trophysiological studies, comprised of recordings of nerve conduction velocities (NCV), electromyography (EMG), Reverse Transcription Quantitative PCR and somesthesic-evoked potentials (SEPs) indicated an RNA extraction was performed using TRIzol and purified axonal sensorimotor neuropathy in the lower limbs, and using PureLink RNA minikit (Life Technologies). First- a pure sensory neuropathy of upper limbs. SEPs indicated strand cDNA synthesis was done using SuperScript III a near-absent spinal response and a very low-amplitude First-Strand Synthesis System for RT-PCR (Life Technolo- cortical response. Patients II-8, II-11, II-12, II-13, and II- gies) and oligodT. Quantitative RT-PCR experiments were 17 showed similar clinical signs and courses with details performed using StepOne Plus RT-PCR system (Applied shown in Table 1. Available results from electrophysiology Biosystems). POLG2 oligonucleotides: forward 50AAACC studies for all subjects are shown in Table S1. CTGTGGAACCTAGGAG30 and reverse 50AGCATGCCT CGGTCTAGGTC30. Each sample was run in triplicate Parkinsonism and was normalized to GAPDH. One subject, II-10, displayed a significantly different clini- cal presentation and clinical course compared to the rest Membrane potential of the kinship. Her disease presented at age 77 years, two Fibroblasts were grown on glass chamber slides and trea- decades later than most others in this family, when she ted with 30 ng/mL rotenone for 4 h at 37°C, or the received a diagnosis of asymmetrical Parkinson’s disease same volume of solvent. 5,50,6,60-tetraethylbenzimidazo- based on the onset of a resting tremor of the left hand, lyl-carbocyanine iodide (JC-1, Life Sciences) of 5 lg/mL mild left-sided rigidity, generalized akinesia (right