Comprehensive Fisheries Survey of Lake Wisconsin, Columbia County and Sauk County, Wisconsin 2017
Waterbody Identification Code: 1260600
Nathan Nye Senior Fisheries Biologist Wisconsin Department of Natural Resources Poynette, Wisconsin April 2020
EXECUTIVE SUMMARY
A comprehensive fisheries survey was conducted on Lake Wisconsin during the spring and fall of 2017. This included early spring electrofishing for Walleyes and Saugers on the Wisconsin River below the Kilbourn Dam (SE1), fyke netting in the main part of the lake for Northern Pike and Walleye (SN1), Muskellunge (SN2), late spring electrofishing for bass and panfish (SE2), and a fall electrofishing survey to assess Walleye and Sauger recruitment (FE). Walleye and Sauger were abundant. The 20 to 28-inch protected slot on Walleye, Sauger, and hybrids provides harvest opportunities for fish 15.0-19.9 inches, good catch and release opportunities for fish 20 to 28 inches, and also the opportunity to harvest large Walleyes over 28 inches. Walleyes in Lake Wisconsin exceeded 15 inches as early as age 3 and averaged 16 inches by age 4. Some Walleyes exceeded 20 inches by age 4, and Walleyes averaged over 20 inches by age 6. Some Walleyes exceeded 28 inches as early as age 8 and averaged over 28 inches by age 13. Maximum length of male Walleyes in 2017 was 23.7 inches, and maximum length of female Walleyes was 30.1 inches. The PE survey did a good job of capturing the size structure of adult Walleyes in Lake Wisconsin. During the PE, 3.2% of Walleyes ≥ 10 inches sampled were ≥28 inches, down from 5.8% in 2012. The estimated the number of Walleyes present in the first 8 miles below the Kilbourn Dam in the early spring of 2017 was 11,928 fish ≥ 12 inches and 7,261 fish ≥ 15 inches.
Bluegill, Black Crappie, and Yellow Perch were common and exhibited good growth. Bluegills as large as 9.5 inches were collected. Bluegills averaged over 6 inches by age 3 and over 8 inches by age 6, placing Bluegill growth ahead of area and state averages. Black Crappies up to 14.2 inches were collected in the survey and Black Crappie growth rates far exceeded area and state averages after age 1, likely due to the abundant forage found in Lake Wisconsin. Black Crappies averaged nearly 9 inches by age 3, and nearly 11 inches by age 4. White Crappies were collected in slightly lower numbers than Black Crappies but grew at very similar rates. Yellow Perch up to 11.3 inches were collected in the survey. Yellow Perch grew faster than the state average but total annual mortality after age 2 was high and few older individuals were sampled.
Largemouth Bass were present in areas of good habitat (shallow bays with aquatic vegetation) but were rare outside these areas. Based on fall electrofishing catch rates from 1993-2018, Largemouth Bass numbers have declined since the mid-2000s. Largemouth Bass reached the legal harvest size of 14 inches as early as age 3 and averaged over 14 inches by age 5. Largemouth Bass grew faster than the state average through age 6. Smallmouth Bass were more common than Largemouth Bass and were found in all parts of Lake Wisconsin. Smallmouth Bass in Lake Wisconsin grew slightly faster than the state average. Smallmouth Bass reached 14 inches as early as age 4 and averaged over 14 inches by age 6.
Naturally reproducing Northern Pike and stocked Muskellunge were present but not well represented in the 2017 survey. This was not necessarily a reflection of low population size, rather the survey, particularly fyke netting, which did a poor job of capturing them. Staff shortages in the spring of 2017 coupled with the size of the system, the amount of available habitat, and an unusual weather pattern during early spring made sampling all the good habitat at the appropriate time difficult.
Additional angling opportunities exist for numerous other gamefish and rough fish species in Lake Wisconsin. Also, a healthy naturally reproducing Lake Sturgeon population provides a month-long hook and line fishery each September, but harvest from Lake Wisconsin is very low with most anglers voluntarily practicing catch-and-release.
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Lake and location: Lake Wisconsin, Columbia County and Sauk County T9NR6E Sections 12-14, 20-23, 29-31 T9NR7E Sections 6, 7 T10N R6E Sections 25, 36 T10N R7E Sections 1-5, 8-11, 17, 19, 20, 30 T10N R8E Sections 4-9, 17 T11N R7E Section 36 T11N R8E Sections 1, 12-15, 22, 23, 26-35 T11N R8E Sections 4-6 T12N R8E Sections 1-6, 10-12 T13N R6E Sections 3, 4, 10, 13-15, 24, 25, 36 T13N R7E Sections 18, 19, 30-36 T13N R8E Section 31
Lake Wisconsin is in the towns of Prairie du Sac, Merrimac, and Delton in Sauk County, and West Point, Lodi, Dekorra, Caledonia, Lewiston, and Newport in Columbia County. Lake Wisconsin is part of the Mississippi River drainage, and specifically the Wisconsin River watershed. It is a large, impounded drainage lake that receives water from the Kilbourn Flowage of the Wisconsin River via discharge from a hydroelectric generation dam located in Wisconsin Dells (Kilbourn Dam) which is owned by Alliant Energy. It also receives input from the Baraboo River and several coldwater trout streams that enter the lake at various points around its shoreline including Parfrey’s Glen Creek, Prentice Creek, Duck Creek, Rocky Run Creek, Rowan Creek, and Spring Creek (Lodi Spring Creek). Several unnamed perennial and intermittent streams drain into the lake as well. Lake Wisconsin discharges to the lower Wisconsin River via the Prairie du Sac (PDS) Dam, a hydroelectric generation dam located at Prairie du Sac. The PDS Dam maintains a 38-foot head and is owned by Alliant Energy.
Physical/Chemical attributes: Morphometry: 9,000 acres, maximum depth of 24 feet, 58.2 miles of shoreline (Poff and Threinen 1965) Watershed: 8,950 square miles, including 485 acres of adjoining wetland (Poff and Threinen 1965) Lake type: Drainage Water clarity: Stained and turbid with dense algal blooms in summer and early fall. Littoral substrate: Muck in shallow bays, sand, gravel, and rock along shoreline of main basin Aquatic vegetation: Present in shallow bays, largely absent from the main part of the lake due to stained water and depth. Winterkill: Periodic in shallow bays and elsewhere. Summer kills noted during periods of extreme heat and dry weather. Boat landing: Approximately 16 public landings around the lake with parking for anywhere from 0 to 25+ vehicles with trailers. Most ramps are paved, and toilet facilities are also available at selected ramps. Other features: Hook and line fishing is open all year for all fish species except Muskellunge, Lake Sturgeon, trout, Paddlefish, and threatened or endangered fish. Season dates and length and bag limits can be found in Table 1.
Purpose of Survey Tier 1 assessment baseline lake survey
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Dates of fieldwork Fyke netting surveys were conducted March 20 through March 24, 2017 (SN1), and April 11 through April 14, 2017 (SN2). A spring electrofishing survey was conducted on the Wisconsin River from the Kilbourn Dam to approximately 7 miles downstream for the purpose of a Walleye population estimate from March 27 through April 9, 2017. A spring electrofishing survey in the main lake was conducted May 15 through May 25, 2017 (SE2). Fall electrofishing for annual Walleye and Sauger recruitment assessment was conducted October 2 through October 5, 2017 on the main lake and below the Kilbourn Dam in Wisconsin Dells.
Fishery Panfish (Bluegills, Crappies, Yellow Perch, Pumpkinseed, Green Sunfish, Warmouth): Bluegills were common in areas of suitable habitat (shallow vegetated bays). Black Crappies and Yellow Perch were common and assorted other panfish species were present.
Sport fish (Walleye, Sauger, Northern Pike, Muskellunge, Largemouth Bass, Smallmouth Bass, Channel Catfish, Flathead Catfish): Sauger, Walleye, and Smallmouth Bass were common. Largemouth Bass, Northern Pike, Muskellunge, Channel Catfish and Flathead Catfish were present.
Sturgeon: A healthy population of Lake Sturgeon was present in the lake numbering approximately 1,600 adult fish ≥ 50 inches. Lake Sturgeon is the only sturgeon species present in Lake Wisconsin.
BACKGROUND
Lake Wisconsin is an impoundment of the Wisconsin River that was created in 1915, following the completion of the Prairie du Sac Dam (Marshall et al. 1985). The Prairie du Sac Dam is owned and operated by Alliant Energy and provides hydroelectric power generation. The lake is highly eutrophic, receiving elevated levels of nutrient input from the extremely large surrounding watershed of nearly 9,000 square miles, which is primarily agricultural. Algal blooms are common in summer and fall. The lake has the stained water color characteristic of the Wisconsin River, and aquatic vegetation is not common outside of shallow bays due to minimal light penetration (Marshall et al. 1985). The lake is highly accessible to the public and is a popular lake for fishing and other forms of water recreation despite the algal blooms. In an effort to address the water quality issues common to the Wisconsin River drainage the Wisconsin River Total Maximum Daily Load (TMDL) study was completed in 2019. A TMDL is the amount of a pollutant that can be present in a waterway and still allows that waterway to meet its water quality standards.
Within the Wisconsin River Basin, those pollutants are phosphorous and suspended solids. The EPA requires that Wisconsin waters not meeting water quality standards be placed on
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Wisconsin’s 303-d list, and these waters must have a TMDL or comparable water quality restoration plan developed. The Wisconsin River study area included 9,156 square miles across 15 counties, from Vilas County in the north down to Columbia, Sauk, and Dane counties in the south; the entire Wisconsin River drainage from the headwaters down through Lake Wisconsin, the downstream-most impoundment in the basin. Each waterbody in the study area (streams, rivers, lakes) was assessed to determine pollutant loads stemming from naturally occurring sources (forests, wetlands), runoff from the surrounding landscape including agricultural sources, and runoff from municipal and industrial wastewater sources as well as stormwater runoff. Results of the study will be used to revise current water quality standards and lead to the adoption of new standards with the goal of improving water quality across the entire watershed. For complete information on the Wisconsin River TMDL, please visit the dedicated DNR web page found at https://dnr.wi.gov/topic/tmdls/wisconsinriver/.
The fish community in the lake is characteristic of large impoundments on large northern river systems. Walleye, Sauger, and Smallmouth Bass are the dominant gamefish, and are sustained entirely through natural reproduction. Naturally reproducing Northern Pike are present in the lake, as are stocked Muskellunge. Bluegill, Black Crappie, White Crappie, and Yellow Perch provide a robust panfish fishery. Bluegill and Largemouth Bass are found in good numbers in shallow bays where aquatic vegetation is present, but are rare in deeper, rockier areas of the main body of the lake. Smallmouth Bass are abundant in these rocky areas and are sustained through good natural reproduction aided by the lake’s connectivity to the Wisconsin River. The river provides an abundance of good Smallmouth Bass habitat.
Although most of the fish populations in Lake Wisconsin are sustained by natural reproduction, some minimal stocking does occur. Tiger Muskellunge (Northern Pike x Muskellunge hybrid) were stocked periodically from 1979 through 2002, but these stockings were discontinued in favor of true Muskellunge. Muskellunge (all large fingerlings) have been stocked several times between 1972 and 2018, including fish raised by the WDNR, its cooperators, and private hatcheries. State-raised muskies are stocked in even years. Lake Sturgeon have been periodically stocked into Lake Wisconsin and the Wisconsin River immediately below Kilbourn Dam since 1998. Different sizes of Lake Sturgeon have been stocked including fry, small fingerlings, large fingerlings, and yearlings and the stocked sturgeon were produced from gametes collected annually from wild broodstock below the Kilbourn Dam during the spring spawning period. Lake Sturgeon stockings occurred only in years when all other quotas were met and surplus fish
4 were available. Additionally, Lake Sturgeon have been stocked in the Baraboo River as part of a sturgeon rehabilitation program following the removal of the last dam on the Baraboo River in 2001. The current quota is annual stocking of 500 yearlings and Lake Sturgeon stocked there have freedom of movement within the Baraboo River and the entirety of Lake Wisconsin. The only other fish stocking that has taken place between the Prairie du Sac Dam and the Kilbourn Dam since 1972 was an unknown number of small fingerling Smallmouth Bass stocked in 2004 as part of USFWS project to reintroduce Higgins eye pearly mussels in the Wisconsin River. Recent fish stocking records for Lake Wisconsin can be found in Table 2.
Man-made fish structures were added to the lake in September 1987 as part of a DNR-led fish crib project. The cribs were placed at 17 sites around the lake and each unit consisted of five 4- foot by 4-foot wood pallets fastened together and weighted with cement blocks. Twenty units were placed at each site within an area approximately 50 feet in diameter. The goal of placing these cribs was to attract crappies.
Rough fish removals have taken place on Lake Wisconsin periodically since at least 1975. The primary goal was to remove Common Carp that were having a detrimental effect on the lake. These removals ideally would have a positive impact on the lake. Rough fish removals were conducted by commercial fishermen who annually bid on and are awarded the contract to remove rough fish from the lake, typically using large-mesh (6-inch bar mesh) seines. Contract fishermen have had difficulty seining fish at times because of the amount of submerged timber and debris in the flowage; nets are often damaged or destroyed. The most recent rough fish removal effort occurred in 2015.
The City of Portage, Wisconsin relocated its wastewater treatment plant discharge from the Fox River to the Wisconsin River in 1983, following a process that began in the late 1970s that included an Environmental Impact Statement done by the United States Environmental Protection Agency. After the city began discharging effluent into the Wisconsin River, the Wisconsin Department of Natural Resources conducted its own study during 1983 and 1984 to assess possible water quality impacts from the new discharge. The results indicated that the discharge had no measurable impact on water quality of the Wisconsin River from the discharge point, downstream through Lake Wisconsin (Marshall et al. 1985).
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Historically, pollutants from industry located along the Wisconsin River, particularly the paper industry, left the fish in the river with levels of contaminants which rendered them unfit for human consumption, as well as an unpleasant odor which made them unpalatable to boot. Following the Clean Water Act of 1972, reductions in pollution led to safer fish for eating and eliminated the foul odors which made the fish unpalatable. Harvest of river fish, especially Walleyes, increased considerably as a result. A statewide 15-inch minimum length limit for Walleyes was enacted in 1990, and in time the size structure of the fishery was reduced as anglers cropped the fish off soon after they reached 15 inches. However, anglers wanted a fishery with larger Walleye while still maintaining the ability to harvest fish for eating. Population modeling indicated that increases in the number of Walleye larger than 28 inches and Sauger larger than 20 inches would be possible under a new regulation. The regulation included a harvest slot from 15 to 19.9 inches and a protected slot from 20 to 28-inches for Walleye, Sauger, and hybrids. The daily bag limit was 5 fish, one of which could be larger than 28 inches. This regulation was enacted on the Wisconsin River above the Prairie du Sac Dam beginning with the 2002 fishing season. The slot was initially instituted on a temporary basis, with a sunset of 2007. At the 2006 spring hearings, it was voted on again, and extended until 2014. At the 2013 spring hearings, attendees voted again on the proposal, this time making the rule permanent.
Lake Wisconsin and the Wisconsin River upstream to Wisconsin Dells has a self-sustaining population of Lake Sturgeon that supports a hook-and-line fishery which runs from the first Saturday in September through September 30 each year. The minimum length limit is 60 inches, the bag limit is one fish per year, anglers must purchase a harvest tag to legally harvest a Lake Sturgeon, and registration of harvested fish by anglers is mandatory. The population size was estimated at 1,600 adults ≥ 50 inches in 2008, and this was essentially unchanged from the previous population estimate in the early 1980s, despite several years of high harvest prior to the minimum length limit being permanently changed to 60 inches in 2007 (Rennicke 2013). The change to the 60-inch minimum length limit along with a growing catch-and-release ethic among Lake Wisconsin sturgeon anglers has served to reduce harvest to very low levels, despite good availability of harvestable fish. Lake Sturgeon in Lake Wisconsin spawn on the fractured bedrock in the Kilbourn Dam tailrace area and this successful natural reproduction sustains the fishery without the need for stocking. Adults from this population are used as the brood stock for hatchery-reared Wisconsin River strain Lake Sturgeon currently utilized in rehabilitation efforts on the Wisconsin River upstream of Kilbourn Dam, the Baraboo River, and the Black River. In years when all quotas are filled and surplus Wisconsin River strain Lake Sturgeon are available,
6 those surplus fish are stocked in the Kilbourn Dam tailrace area where their parents would have spawned naturally.
METHODS
Data collection-2017 Wisconsin River Walleye PE Past WDNR surveys and anecdotal information from anglers indicated that in early spring, sexually mature Walleyes left the main body of Lake Wisconsin and entered the Wisconsin River to spawn. Early spring Walleye and Sauger sampling efforts in 2017 were concentrated in the Wisconsin River below the Kilbourn Dam in areas where spawning habitat was judged to be the best. Daytime electrofishing was conducted on March 27, and night electrofishing occurred from March 27-April 9 except for March 30 and April 5. Specific stations were not sampled, but the general sampling area was the Wisconsin River from the Kilbourn Dam downstream to Fisherman’s Luck Bar. Only Walleye and Sauger were collected except for four juvenile Lake Sturgeon on April 1. Captured Walleye and Sauger that were 12.0 inches and larger were marked with a Floy FD-94 T-bar anchor tag and a top caudal fin clip, while fish smaller than 12.0 inches received a bottom caudal fin clip. Walleye, Sauger, and Lake Sturgeon were measured to the nearest 0.1 inch and sex was recorded when evident. Dorsal spines were taken from a subsample of 5 fish per half-inch group for males, females, and immature/unknown Walleyes and Saugers for age and growth analysis. Lake Sturgeon were marked with passive integrated transponder (PIT) tags.
Data collection-Lake Wisconsin, Spring 2017 Following ice-out, 7 standard 3-foot hoop fyke nets with 0.7-inch bar, 1.4-inch stretch mesh were set on March 20, 2017; these fyke nets targeted Northern Pike and Walleye (SN1). Fyke net locations (GPS coordinates) can be found in Table 3. All 7 nets were run from March 21 through March 23 when four nets were removed. The remaining three nets were removed on March 24 because the crew had to shift focus to Walleye electrofishing in the river. Staff shortages prevented two crews from running fyke nets in the lake concurrently with a third crew night electrofishing Walleyes in the river like what was done in 2012. Lingering ice coverage in portions of the lake coupled with the limited coverage that could be achieved by a single crew reduced the amount of sampling gear deployed during SN1. Nine nets were set again on April 11, marking the beginning of SN2 targeting Muskellunge. Net sets focused primarily on locations where muskies were captured in 2012. Nine nets were run each day from April 12 to
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April 14 when nets were removed because conditions were becoming favorable for Lake Sturgeon spawning in the Wisconsin River and the crew had to shift its focus to sturgeon sampling.
Gamefish, as defined in Wisconsin Statutes Chapter 29.001 (41), includes all varieties of fish except rough fish and minnows. Panfish are therefore gamefish, and by definition in Wisconsin Statutes Chapter 20.03 (29), panfish includes Yellow Perch, Bluegill, Black Crappie, White Crappie, Pumpkinseed, Green Sunfish, Warmouth, and Orangespotted Sunfish (Orangespotted Sunfish are not present in Lake Wisconsin). For the purposes of this report, sport fish refers to a subset of gamefish including Walleye, Sauger, Northern Pike, Muskellunge, Largemouth Bass, Smallmouth Bass, Channel Catfish, and Flathead Catfish. During fyke netting, all fish were measured to the nearest 0.1-inch and sex was recorded when evident for Northern Pike, Muskellunge, Walleye, Sauger and Yellow Perch. Aging structures were taken from a subsample of Largemouth Bass, Smallmouth Bass, Northern Pike, Muskellunge, Walleye, Sauger, Yellow Perch, Bluegill, Black Crappie and White Crappie. The goal was to take structures from 5 fish per half-inch group, per species except for Walleye, Sauger, Yellow Perch, Muskellunge and Northern Pike where the goal was 5 structures per half-inch group for each sex. Any fish that had an aging structure removed was also weighed to the nearest gram. Muskellunge and Flathead Catfish were implanted with PIT tags. Walleyes and Saugers ≥ 12 inches were marked with Floy FD-94 t-bar anchor tags.
A WDNR standard direct current (DC) boomshocker boat was used to sample fish on the nights of May 15 through May 18 and May 25, 2017. Prior to sampling, the shockable shoreline of the lake was divided into 103 half-mile electrofishing stations beginning with Station 1 on the Columbia County shore just above the Prairie du Sac Dam. Stations were numbered sequentially moving in a counterclockwise direction around the lake with Station 103 ending just above the Prairie du Sac Dam on the Sauk County shoreline. A total of 24 half-mile electrofishing stations were sampled, including 10 all species stations and 14 sport fish-only stations. The all species stations targeted areas of good panfish habitat (shallow areas with aquatic vegetation), while the sport fish stations were chosen randomly from the remaining pool of 93 possible half-mile stations. The goal of the targeted all species effort was to determine which stations had the highest panfish abundance with the goal of establishing fixed panfish index stations to be sampled in future surveys. Common Carp were observed and counted when sampling all species stations but were not dip-netted. All gamefish (panfish, sport fish, and other gamefish species) were
8 measured to the nearest 0.1 inch. Aging structures were collected, and weights were recorded as needed to fill out length bins for each species. Specific aging structures used for each species are presented in Table 4. Starting and ending GPS coordinates for electrofishing stations sampled during SE2 can be found in Table 5.
Fall Walleye and Sauger recruitment survey A WDNR standard direct current (DC) boomshocker boat was used to sample fish on the Wisconsin River below the Kilbourn Dam on the night of October 2, 2017 and on Lake Wisconsin on the nights of October 3 through October 5, 2017. Established electrofishing stations have been sampled each year since 1993, including 6 stations in Lake Wisconsin and 2 stations below the Kilbourn Dam on the Wisconsin River; GPS coordinates of the beginning and ending points of each station can be found in Table 6. The purpose of the annual survey has been to assess Walleye and Sauger recruitment in Lake Wisconsin and the Wisconsin River, and to monitor trends in populations of other gamefish. All sport fish were collected and measured to the nearest 0.1 inch. Walleyes and Saugers ≥ 12 were marked with a Floy FD-94 t-bar anchor tag. Muskellunge and Flathead Catfish were marked with PIT tags.
Data analysis The Walleye PE was calculated using the multiple-census Schnabel method where fish are marked and added to the population during multiple events over a period of time. On all visits after the first visit, captured fish were examined for marks, and returned to the population. Major assumptions of this method require that the population be constant, with no recruitment and no mortality during the experiment (Ricker 1975). These assumptions essentially hold true for this survey; the duration was short enough that no recruitment occurred, and negligible mortality relative to the total population size occurred. Results of the PE are reflective of the portion of the Walleye population using the Wisconsin River near Wisconsin Dells for spawning and should not be considered an estimate of the population size in the entire Lake Wisconsin system.
Various data analyses were completed using both Microsoft Excel and R (version 3.5.1) combined with R Studio (version 1.1.456). For SN1, SN2, SE2, and fall electrofishing, total catch and catch-per-unit effort (CPUE) were calculated by gear type. Length frequency distributions were generated for species of interest, including Walleye, Sauger, Largemouth and Smallmouth Bass, Northern Pike, Muskellunge, Bluegill, Black Crappie, White Crappie, and Yellow Perch. Length range, mean length, and median length were calculated for all species.
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Proportional size distributions (PSDs) were calculated for all gamefish species with more than 100 stock-size individuals collected (Anderson and Neumann 1996, Guy et al. 2007). Length designations for stock, quality, legal or common harvest sizes, preferred, memorable, and trophy sizes of gamefish species collected from Lake Wisconsin can be found in Table 7; these values were used for calculation of PSD (Anderson and Neumann 1996). For Bluegills, separate PSD calculations were made from the fyke net catch and the SE2 catch. Possible bias toward larger fish exists for the fyke net data because fyke nets have been shown to be selective for larger Bluegills (Laarman and Ryckman 1982).
Aging structures (scales, dorsal spines, and anal fin rays/spines) were used to estimate ages of a subsample of each species, and age and length data from these fish were used to generate age- length keys to estimate the age frequency of the whole population based on the aged subsample. Age frequency distributions were then generated for each species.
Once age frequency distributions were completed for each species, inferences were made about year class strength and mortality when possible. Total annual mortality estimates were calculated using catch curves. Mean length-at-age was used to make inferences about growth of fish in Lake Wisconsin by comparing the lake to area and statewide averages. The area average was calculated from mean length-at-age values from lakes managed out of the Poynette Fisheries office and surveyed from 2006-2017 (11 lakes, 12 total surveys). Mean length-at-age was calculated using methods outlined in Bettoli and Miranda (2001), with the formula listed here:
퐿푖 =( 푁 푙 )/푁