Updated 6/21/2018 by Mike Heaton Table 3. WGS IGV links for USMARC Extended Diversity Panel v1.0

Estimateda USMARC animal mapped read GB b Breed ID Public links coverage >Q20 .bam file Angus 19879801 View in IGV 12.7 51.4 7686214420 Angus 19939802 View in IGV 10.3 41.7 7686214358 Angus 19999821 View in IGV 10.7 43.4 7686214435 Angus 19999822 View in IGV 11.0 44.8 7686214444 Angus 19999823 View in IGV 11.4 46.3 7686214359 Angus 19999825 View in IGV 11.0 44.6 7686214446 Angus, 6 genomes: View Angus in IGV

Ankole-Watusi 19360202 View in IGV 12.5 41.7 7917737873 Ankole-Watusi 19360205 View in IGV 14.9 49.5 7917737886 Ankole-Watusi 19360214 View in IGV 16.4 54.5 7917737899 Ankole-Watusi 19360220 View in IGV 12.8 42.7 7917737912 Ankole-Watusi, 4 genomes: View Ankole-Watusi in IGV

Ayrshire 19360805 41.3 Ayrshire 19360822 41.1 Ayrshire 19360860 49.2 Ayrshire 19360866 40.3 Ayrshire, 4 genomes:

Beefmaster 19999925 View in IGV 19.4 78.8 7686214378 19999926 View in IGV 10.5 42.6 7686214370 Beefmaster 19999927 View in IGV 27.0 109.4 7686214411 Beefmaster 19999928 View in IGV 13.2 53.7 7686214387 Beefmaster 19999929 View in IGV 11.0 44.8 7686214404 Beefmaster, 5 genomes: View Beefmaster in IGV

Belgian Blue 19360119 Belgian Blue 19360120 Belgian Blue 19360125 Belgian Blue 19360127 Belgian Blue, 3 genomes:

Blonde d'Aquitaine 19360602 57.2 Blonde d'Aquitaine 19360608 54.2 Blonde d'Aquitaine 19360611 51.3 Blonde d'Aquitaine 19360614 58.4 Blonde d'Aquitaine, 3 genomes:

Brahman 19919842 View in IGV 19.6 79.7 7686214421 Brahman 19999811 View in IGV 19.6 79.4 7686214445 Brahman 19999812 View in IGV 10.0 40.6 7686214367 Brahman 19999813 View in IGV 12.6 51.2 7686214429 Brahman 19999819 View in IGV 12.1 49.2 7686214392 Brahman, 5 genomes: View Brahman in IGV

Brahmousin 19361305 View in IGV 10.5 42.8 7919633737 Brahmousin 19361314 View in IGV 10.8 43.9 7919633776 Brahmousin 19361346 View in IGV 10.2 41.6 7919633750 Brahmousin 19361361 View in IGV 10.7 43.6 7919633763 Brahmousin, 4 genomes: View Brahmousin in IGV

Brangus 19999909 View in IGV 11.9 48.4 7686214440 19999910 View in IGV 11.8 48.1 7686214380 Brangus 19999911 View in IGV 20.9 84.9 7686214389 Brangus 19999912 View in IGV 10.6 42.9 7686214364 Brangus 19999913 View in IGV 10.5 42.7 7686214390 Brangus, 5 genomes: View Brangus in IGV

Braunvieh 19220065 View in IGV 10.6 43.2 7686214363 19220072 View in IGV 10.9 44.1 7686214437 Braunvieh 19220079 View in IGV 11.3 46.0 7686214366 Braunvieh 19220086 View in IGV 10.6 42.8 7686214448 Braunvieh, 4 genomes View Braunvieh in IGV

Brown Swiss 19220321 49.9 Brown Swiss 19220324 40.9 Brown Swiss 19220378 46.1 Brown Swiss 19220381 65.9 Brown Swiss, 4 genomes

Charolais 19939808 View in IGV 9.9 40.2 7686215631 Charolais 19969825 View in IGV 10.0 40.8 7686214369 Charolais 19989916 View in IGV 12.3 49.9 7686215629 Charolais 19989919 View in IGV 16.8 68.3 7686214374 Charolais 19999851 View in IGV 10.1 40.8 7686214415 Charolais 19999852 View in IGV 11.7 47.6 7686214433 Charolais, 6 genomes View Charolais in IGV

Chianina 19999914 View in IGV 9.9 40.2 7686214386 19999918 View in IGV 10.0 40.4 7686214360 Chianina 19999923 View in IGV 10.7 43.5 7686214422 Chianina 19999924 View in IGV 13.2 53.4 7686214381 Chianina, 4 genomes View Chianina in IGV

Corriente 19202900 View in IGV 11.3 46.1 7686214362 19202901 View in IGV 10.1 41.1 7686214407 Corriente 19202902 View in IGV 12.9 52.4 7686214430 Corriente 19202903 View in IGV 10.5 42.7 7686214397 Corriente, 4 genomes View Corriente in IGV

Devon 19201901 Devon 19201906 Devon 19201910 Devon 19201921 Devon, 4 genomes

Dexter 19201932 41.2 Dexter 19201937 50.1 Dexter 19201941 42.3 Dexter 19201953 52.6 Dexter, 4 genomes 19929826 View in IGV 12.5 50.8 7686214443 Gelbvieh 19989876 View in IGV 10.5 42.5 7686214447 Gelbvieh 19999863 View in IGV 19.2 78.1 7686214399 Gelbvieh 19999864 View in IGV 10.2 41.2 7686214398 Gelbvieh 19999865 View in IGV 12.5 50.7 7686215632 Gelbvieh 19999866 View in IGV 10.2 41.5 7686214449 Gelbvieh, 6 genomes View Gelbvieh in IGV

Guernsey 19361402 44.3 Guernsey 19361408 40.2 Guernsey 19361422 67.1 Guernsey 19361434 47.5 Guernsey, 4 genomes

Hereford 19969811 View in IGV 11.7 47.5 7686214409 Hereford 19969812 View in IGV 14.3 58.2 7686214382 Hereford 19989837 View in IGV 14.3 58.1 7686214427 Hereford 19999828 View in IGV 10.1 41.2 7686214385 Hereford 19999829 View in IGV 10.8 44.0 7686214376 Hereford 20049808 View in IGV 10.2 41.3 7686214412 Hereford, 6 genomes View Hereford in IGV

Highland 19361102 View in IGV 10.2 41.5 7919258275 Highland 19361105 View in IGV 10.4 42.4 7919258288 Highland 19361126 View in IGV 11.2 45.6 7919258301 Highland 19361131 View in IGV 10.9 44.2 7919258314 Highland, 4 genomes View Highland in IGV

Holstein 19999883 View in IGV 12.1 40.4 7917738016 Holstein 19999884 View in IGV 15.1 50.2 7917738029 Holstein 19999886 View in IGV 12.8 42.5 7917738042 Holstein 19999887 View in IGV 12.2 40.8 7917738055 Holstein, 4 genomes View Holstein in IGV

Indu Brazil 19361502 View in IGV 11.8 47.8 7919633561 Indu Brazil 19361508 View in IGV 15.2 61.7 7919633574 Indu Brazil 19361528 View in IGV 11.4 46.3 7919633587 Indu Brazil 19361549 View in IGV 10.3 41.7 7919633600 Indu Brazil, 4 genomes View Indu Brazil in IGV

Jersey 34824843 51.7 Jersey 34824853 54.8 Jersey 40159734 49.3 Jersey 42507541 46.5 Jersey, 4 genomes

Limousin 19989863 View in IGV 10.7 43.4 7686214416 Limousin 19999833 View in IGV 11.9 48.2 7686214438 Limousin 19999834 View in IGV 10.6 43.2 7686214442 Limousin 19999835 View in IGV 11.5 46.8 7686214375 Limousin 19999837 View in IGV 11.2 45.7 7686214393 Limousin 19999838 View in IGV 10.4 42.4 7686214391 Limousin, 6 genomes View Limousin in IGV

Maine-Anjou 19999900 View in IGV 10.3 41.8 7686214426 Maine-Anjou 19999901 View in IGV 11.2 45.6 7686214377 Maine-Anjou 19999902 View in IGV 9.9 40.3 7686214418 Maine-Anjou 19999903 View in IGV 10.0 40.7 7686214388 Maine-Anjou 19999904 View in IGV 10.4 42.4 7686214373 Maine-Anjou, 5 genomes View Maine Anjou in IGV

Marchigiana Marchigiana Marchigiana Marchigiana, 4 genomes

Miniature Hereford Miniature Hereford Miniature Hereford Miniature Hereford Miniature Hereford, 4 genomes

Miniature Zebu Miniature Zebu Miniature Zebu Miniature Zebu Miniature Zebu, 4 genomes

Montbeliarde Montbeliarde Montbeliarde Montbeliarde Montbeliarde, 4 genomes

Murray Grey Murray Grey Murray Grey Murray Grey Murray Grey, 4 genomes

Nelore 19350205 View in IGV 20.4 68.0 7917737821 Nelore 19350207 View in IGV 14.9 49.7 7917737834 Nelore 19350210 View in IGV 15.1 50.3 7917737847 Nelore 19350213 View in IGV 16.4 54.8 7917737860 Nelore, 4 genomes View Nelore in IGV

Piedmontese 19310107 View in IGV 16.0 53.3 7917737795 Piedmontese 19310142 View in IGV 21.9 73.0 7917737808 Piedmontese 19859862 View in IGV 15.4 51.2 7917737977 Piedmontese 19869834 View in IGV 13.8 46.1 7917737990 Piedmontese 19869835 View in IGV 17.6 58.7 7917738003 Piedmontese, 5 genomes View Piedmontese in IGV

Pinzgauer Pinzgauer Pinzgauer Pinzgauer Pinzgauer, 4 genomes

Red Angus 19979802 View in IGV 9.9 40.3 7686215630 19999855 View in IGV 10.2 41.5 7686214434 Red Angus 19999856 View in IGV 10.3 41.9 7686214432 Red Angus 19999857 View in IGV 15.1 61.2 7686214383 Red Angus 19999859 View in IGV 10.0 40.5 7686214384 Red Angus 19999860 View in IGV 10.1 40.9 7686214402 Red Angus, 6 genomes View Red Angus in IGV

Red Poll Red Poll Red Poll Red Poll Red Poll, 4 genomes

Romagnola 19361002 19361014 Romagnola 19361037 Romagnola 19361040 Romagnola, 4 genomes

Salers 19999874 View in IGV 10.3 41.8 7686214400 Salers 19999875 View in IGV 10.3 41.7 7686214436 Salers 19999876 View in IGV 10.3 41.8 7686214405 Salers 19999880 View in IGV 12.2 49.6 7686214424 Salers 19999882 View in IGV 10.6 43.1 7686214371 Salers, 5 genomes View Salers in IGV

Santa Gertrudis 19999905 View in IGV 20.3 82.5 7686214361 Santa Gertrudis 19999906 View in IGV 10.5 42.7 7686214419 Santa Gertrudis 19999907 View in IGV 10.8 43.7 7686214396 Santa Gertrudis 19999908 View in IGV 11.0 44.7 7686214417 Santa Gertrudis, 4 genomes View Santa Gertrudis in IGV

Senepol Senepol Senepol Senepol, 4 genomes

Shorthorn 19999891 View in IGV 10.4 42.2 7686214423 Shorthorn 19999892 View in IGV 10.1 41.0 7686214365 Shorthorn 19999893 View in IGV 10.1 40.9 7686214428 Shorthorn 19999894 View in IGV 10.1 41.2 7686214413 Shorthorn 19999895 View in IGV 11.1 45.2 7686214394 Shorthorn, 5 genomes View Shorthorn in IGV

Simmental 19929810 View in IGV 16.3 66.4 7686214439 Simmental 19999842 View in IGV 11.8 48.1 7686214379 Simmental 19999843 View in IGV 12.6 51.1 7686214372 Simmental 19999846 View in IGV 13.4 54.3 7686214401 Simmental 19999847 View in IGV 12.2 49.5 7686214395 Simmental 19999848 View in IGV 9.9 40.2 7686214406 Simmental, 6 genomes View Simmental in IGV

Tarentaise 19293032 View in IGV 10.1 40.9 7686214368 Tarentaise 19293033 View in IGV 11.8 47.7 7686214408 Tarentaise 19293034 View in IGV 11.9 48.1 7686214414 Tarentaise 19293035 View in IGV 10.8 43.8 7686214410 Tarentaise, 4 genomes View Tarentaise in IGV

Texas Longhorn 19999870 View in IGV 10.5 42.8 7686214403 19999871 View in IGV 10.2 41.4 7686214425 Texas Longhorn 19999872 View in IGV 10.0 40.6 7686214431 Texas Longhorn 19999873 View in IGV 10.2 41.4 7686214441 Texas Longhorn, 4 genomes View Texas Longhorn in IGV

Texas Longhorn, CTLR Texas Longhorn, CTLR Texas Longhorn, CTLR Texas Longhorn, CTLR Texas Longhorn, CTLR, 4 genomes

Tuli 19360501 View in IGV 12.2 40.6 7917737925 Tuli 19360504 View in IGV 14.3 47.7 7917737938 Tuli 19360506 View in IGV 13.1 43.5 7917737951 Tuli 19360509 View in IGV 12.1 40.4 7917737964 Tuli, 4 genomes View Tuli in IGV

Wagyu 19201661 View in IGV 10.3 41.9 7919633522 Wagyu 19201692 View in IGV 13.4 54.4 7919633548 Wagyu 19201703 View in IGV 11.9 48.4 7919633535 Wagyu 19201777 View in IGV 11.1 44.9 7919633509 Wagyu, 4 genomes View Wagyu in IGV

Total 1633.4 7588.4 Average 12.3 48.3 a Citation: Heaton MP, Smith TPL, Carnahan JK, Basnayake V, Qiu J, Simpson B, Kalbfleisch TS. Using diverse U.S. cattle genomes to identify missense mutations in EPAS1 , a gene associated with high-altitude pulmonary hypertension. F1000Research 2016, 5:2003. doi: 10.12688/f1000research.9254.1 b Total gigabases of genomic sequence with a quality score greater than or equal to 20. Tru-Seq paired- end libraries were sequenced with NextSeq500 high-output kits (300 cycles, Illumina Inc. San Diego CA).

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