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Unix Introduction
Unix introduction Mikhail Dozmorov Summer 2018 Mikhail Dozmorov Unix introduction Summer 2018 1 / 37 What is Unix Unix is a family of operating systems and environments that exploits the power of linguistic abstractions to perform tasks Unix is not an acronym; it is a pun on “Multics”. Multics was a large multi-user operating system that was being developed at Bell Labs shortly before Unix was created in the early ’70s. Brian Kernighan is credited with the name. All computational genomics is done in Unix http://www.read.seas.harvard.edu/~kohler/class/aosref/ritchie84evolution.pdfMikhail Dozmorov Unix introduction Summer 2018 2 / 37 History of Unix Initial file system, command interpreter (shell), and process management started by Ken Thompson File system and further development from Dennis Ritchie, as well as Doug McIlroy and Joe Ossanna Vast array of simple, dependable tools that each do one simple task Ken Thompson (sitting) and Dennis Ritchie working together at a PDP-11 Mikhail Dozmorov Unix introduction Summer 2018 3 / 37 Philosophy of Unix Vast array of simple, dependable tools Each do one simple task, and do it really well By combining these tools, one can conduct rather sophisticated analyses The Linux help philosophy: “RTFM” (Read the Fine Manual) Mikhail Dozmorov Unix introduction Summer 2018 4 / 37 Know your Unix Unix users spend a lot of time at the command line In Unix, a word is worth a thousand mouse clicks Mikhail Dozmorov Unix introduction Summer 2018 5 / 37 Unix systems Three common types of laptop/desktop operating systems: Windows, Mac, Linux. Mac and Linux are both Unix-like! What that means for us: Unix-like operating systems are equipped with “shells”" that provide a command line user interface. -
Beginning Portable Shell Scripting from Novice to Professional
Beginning Portable Shell Scripting From Novice to Professional Peter Seebach 10436fmfinal 1 10/23/08 10:40:24 PM Beginning Portable Shell Scripting: From Novice to Professional Copyright © 2008 by Peter Seebach All rights reserved. No part of this work may be reproduced or transmitted in any form or by any means, electronic or mechanical, including photocopying, recording, or by any information storage or retrieval system, without the prior written permission of the copyright owner and the publisher. ISBN-13 (pbk): 978-1-4302-1043-6 ISBN-10 (pbk): 1-4302-1043-5 ISBN-13 (electronic): 978-1-4302-1044-3 ISBN-10 (electronic): 1-4302-1044-3 Printed and bound in the United States of America 9 8 7 6 5 4 3 2 1 Trademarked names may appear in this book. Rather than use a trademark symbol with every occurrence of a trademarked name, we use the names only in an editorial fashion and to the benefit of the trademark owner, with no intention of infringement of the trademark. Lead Editor: Frank Pohlmann Technical Reviewer: Gary V. Vaughan Editorial Board: Clay Andres, Steve Anglin, Ewan Buckingham, Tony Campbell, Gary Cornell, Jonathan Gennick, Michelle Lowman, Matthew Moodie, Jeffrey Pepper, Frank Pohlmann, Ben Renow-Clarke, Dominic Shakeshaft, Matt Wade, Tom Welsh Project Manager: Richard Dal Porto Copy Editor: Kim Benbow Associate Production Director: Kari Brooks-Copony Production Editor: Katie Stence Compositor: Linda Weidemann, Wolf Creek Press Proofreader: Dan Shaw Indexer: Broccoli Information Management Cover Designer: Kurt Krames Manufacturing Director: Tom Debolski Distributed to the book trade worldwide by Springer-Verlag New York, Inc., 233 Spring Street, 6th Floor, New York, NY 10013. -
Introduction to Unix
Introduction to Unix Rob Funk <[email protected]> University Technology Services Workstation Support http://wks.uts.ohio-state.edu/ University Technology Services Course Objectives • basic background in Unix structure • knowledge of getting started • directory navigation and control • file maintenance and display commands • shells • Unix features • text processing University Technology Services Course Objectives Useful commands • working with files • system resources • printing • vi editor University Technology Services In the Introduction to UNIX document 3 • shell programming • Unix command summary tables • short Unix bibliography (also see web site) We will not, however, be covering these topics in the lecture. Numbers on slides indicate page number in book. University Technology Services History of Unix 7–8 1960s multics project (MIT, GE, AT&T) 1970s AT&T Bell Labs 1970s/80s UC Berkeley 1980s DOS imitated many Unix ideas Commercial Unix fragmentation GNU Project 1990s Linux now Unix is widespread and available from many sources, both free and commercial University Technology Services Unix Systems 7–8 SunOS/Solaris Sun Microsystems Digital Unix (Tru64) Digital/Compaq HP-UX Hewlett Packard Irix SGI UNICOS Cray NetBSD, FreeBSD UC Berkeley / the Net Linux Linus Torvalds / the Net University Technology Services Unix Philosophy • Multiuser / Multitasking • Toolbox approach • Flexibility / Freedom • Conciseness • Everything is a file • File system has places, processes have life • Designed by programmers for programmers University Technology Services -
“Linux at the Command Line” Don Johnson of BU IS&T We’Ll Start with a Sign in Sheet
“Linux at the Command Line” Don Johnson of BU IS&T We’ll start with a sign in sheet. We’ll end with a class evaluation. We’ll cover as much as we can in the time allowed; if we don’t cover everything, you’ll pick it up as you continue working with Linux. This is a hands-on, lab class; ask questions at any time. Commands for you to type are in BOLD The Most Common O/S Used By BU Researchers When Working on a Server or Computer Cluster Linux is a Unix clone begun in 1991 and written from scratch by Linus Torvalds with assistance from a loosely-knit team of hackers across the Net. 64% of the world’s servers run some variant of Unix or Linux. The Android phone and the Kindle run Linux. a set of small Linux is an O/S core programs written by written by Linus Richard Stallman and Torvalds and others others. They are the AND GNU utilities. http://www.gnu.org/ Network: ssh, scp Shells: BASH, TCSH, clear, history, chsh, echo, set, setenv, xargs System Information: w, whoami, man, info, which, free, echo, date, cal, df, free Command Information: man, info Symbols: |, >, >>, <, ;, ~, ., .. Filters: grep, egrep, more, less, head, tail Hotkeys: <ctrl><c>, <ctrl><d> File System: ls, mkdir, cd, pwd, mv, touch, file, find, diff, cmp, du, chmod, find File Editors: gedit, nedit You need a “xterm” emulation – software that emulates an “X” terminal and that connects using the “SSH” Secure Shell protocol. ◦ Windows Use StarNet “X-Win32:” http://www.bu.edu/tech/support/desktop/ distribution/xwindows/xwin32/ ◦ Mac OS X “Terminal” is already installed Why? Darwin, the system on which Apple's Mac OS X is built, is a derivative of 4.4BSD-Lite2 and FreeBSD. -
Shell Variables
Shell Using the command line Orna Agmon ladypine at vipe.technion.ac.il Haifux Shell – p. 1/55 TOC Various shells Customizing the shell getting help and information Combining simple and useful commands output redirection lists of commands job control environment variables Remote shell textual editors textual clients references Shell – p. 2/55 What is the shell? The shell is the wrapper around the system: a communication means between the user and the system The shell is the manner in which the user can interact with the system through the terminal. The shell is also a script interpreter. The simplest script is a bunch of shell commands. Shell scripts are used in order to boot the system. The user can also write and execute shell scripts. Shell – p. 3/55 Shell - which shell? There are several kinds of shells. For example, bash (Bourne Again Shell), csh, tcsh, zsh, ksh (Korn Shell). The most important shell is bash, since it is available on almost every free Unix system. The Linux system scripts use bash. The default shell for the user is set in the /etc/passwd file. Here is a line out of this file for example: dana:x:500:500:Dana,,,:/home/dana:/bin/bash This line means that user dana uses bash (located on the system at /bin/bash) as her default shell. Shell – p. 4/55 Starting to work in another shell If Dana wishes to temporarily use another shell, she can simply call this shell from the command line: [dana@granada ˜]$ bash dana@granada:˜$ #In bash now dana@granada:˜$ exit [dana@granada ˜]$ bash dana@granada:˜$ #In bash now, going to hit ctrl D dana@granada:˜$ exit [dana@granada ˜]$ #In original shell now Shell – p. -
LPI 101 – Work on the Command Line [5] (Linux Professional Institute Certification) A
– LPI 101 – Work on the Command Line [5] (Linux Professional Institute Certification) a .˜. /V\ by: geoffrey robertson // \\ [email protected] @._.@ $Id: gl1.103.1.slides.tex,v 1.3 2003/05/30 05:09:04 waratah Exp $ a c Copyright 2002 Geoffrey Robertson, Andrew Eager. Permission is granted to make and distribute verbatim copies or modified versions of this document provided that this copyright notice and this permission notice are preserved on all copies under the terms of the GNU General Public License as published by the Free Software Foundation—either version 2 of the License or (at your option) any later version. 1 Work on the command line [5] Objective Candidate should be able to interact with shells and commands using the command line. This includes typing valid commands and command sequences, defining, referencing and exporting environment variables, using command history and editing facilities, invoking commands in the path and outside the path, using command substitution, applying commands recursively through a directory tree and using man to find about commands. 2 Work on the command line [5] Key files, terms, and utilities ¡ . ¡ man ¡ bash ¡ pwd ¡ echo ¡ set ¡ env ¡ unset ¡ ¡ exec ˜/.bash history ¡ ¡ export ˜/.profile 3 Work on the command line [5] Resources of interest LPI Certification in a Nutshell pp15—19 LPIC 1 Cert. Bible Chapter 2 Linux Shells by Example by Ellie Quigley 4 Shells Command Line Interface ¡ A shell is the program that provides a Command Line Interface to the operating system. 5 Shells may be accessed in various ways: – Virtual Console – Terminal attached to a serial line – Remote access over tcp/ip with telnet, rsh or ssh – An X terminal run on an X session, either on the local console or remotely See /etc/inittab Shells Command Line Interface ¡ A shell is the program that provides a Command Line Interface to the operating system. -
Php Tutorial
PHP About the Tutorial The PHP Hypertext Preprocessor (PHP) is a programming language that allows web developers to create dynamic content that interacts with databases. PHP is basically used for developing web-based software applications. This tutorial will help you understand the basics of PHP and how to put it in practice. Audience This tutorial has been designed to meet the requirements of all those readers who are keen to learn the basics of PHP. Prerequisites Before proceeding with this tutorial, you should have a basic understanding of computer programming, Internet, Database, and MySQL. Copyright & Disclaimer © Copyright 2016 by Tutorials Point (I) Pvt. Ltd. All the content and graphics published in this e-book are the property of Tutorials Point (I) Pvt. Ltd. The user of this e-book is prohibited to reuse, retain, copy, distribute or republish any contents or a part of contents of this e-book in any manner without written consent of the publisher. We strive to update the contents of our website and tutorials as timely and as precisely as possible, however, the contents may contain inaccuracies or errors. Tutorials Point (I) Pvt. Ltd. provides no guarantee regarding the accuracy, timeliness or completeness of our website or its contents including this tutorial. If you discover any errors on our website or in this tutorial, please notify us at [email protected] i PHP Table of Contents About the Tutorial ........................................................................................................................................... -
Bash Guide for Beginners
Bash Guide for Beginners Machtelt Garrels Garrels BVBA <tille wants no spam _at_ garrels dot be> Version 1.11 Last updated 20081227 Edition Bash Guide for Beginners Table of Contents Introduction.........................................................................................................................................................1 1. Why this guide?...................................................................................................................................1 2. Who should read this book?.................................................................................................................1 3. New versions, translations and availability.........................................................................................2 4. Revision History..................................................................................................................................2 5. Contributions.......................................................................................................................................3 6. Feedback..............................................................................................................................................3 7. Copyright information.........................................................................................................................3 8. What do you need?...............................................................................................................................4 9. Conventions used in this -
Lab Work 06. Linux Shell. Files Globbing & Streams Redirection
LAB WORK 06. LINUX SHELL. FILES GLOBBING & STREAMS REDIRECTION. 1. PURPOSE OF WORK • Learn to use shell file globbing (wildcard); • Learn basic concepts about standard UNIX/Linux streams redirections; • Acquire skills of working with filter-programs. • Get experience in creating composite commands that have a different functional purpose than the original commands. 2. TASKS FOR WORK NOTE. Start Your UbuntuMini Virtual Machine on your VirtualBox. You need only Linux Terminal to complete the lab tasks. Before completing the tasks, make a Snapshot of your Virtual Linux. If there are problems, you can easily go back to working condition! 2.0. Create new User account for this Lab Work. • Login as student account (user with sudo permissions). • Create new user account, example stud. Use adduser command. (NOTE. You can use the command “userdel –rf stud” to delete stud account from your Linux.) $ sudo adduser stud • Logout from student account (logout) and login as stud. 2.1. Shell File Globbing Study. 2.2. File Globbing Practice. (Fill in a Table 1 and Table 2) 2.3. Command I/O Redirection Study. 2.4. Redirection Practice. (Fill in a Table 3 and Table 4) © Yuriy Shamshin, 2021 1/20 3. REPORT Make a report about this work and send it to the teacher’s email (use a docx Report Blank). REPORT FOR LAB WORK 06: LINUX SHELL. FILES GLOBBING & STREAMS REDIRECTION Student Name Surname Student ID (nV) Date 3.1. Insert Completing Table 1. File globbing understanding. 3.2. Insert Completing Table 2. File globbing creation. 3.3. Insert Completing Table 3. Command I/O redirection understanding. -
A Common Framework for Scripting Tutorials Erik Hjelmås and Ivar
A Common Framework for Scripting Tutorials Erik Hjelmås and Ivar Farup Abstract A scripting tutorial should focus on teaching the characteristics of scripting languages, avoiding the pitfall of teaching only syntax conversion from system programming languages. Examples should be selected to emphasize features of scripting languages in general (e.g. weak typing, associate arrays, “gluing”) and the scripting language at hand. Students might benefit from using the same framework (structure of programming elements and examples) for learning multiple scripting languages. Their existing programming skills should be reused while newly introduced scripting concepts should be reinforced in subsequent examples. 1 Introduction Scripting languages are popular for solving problems in many different domains [8]. Some are general scripting languages such as Perl, Python and Ruby, while others are slightly domain-specific (platform-specific: Bash, PowerShell) or very domain-specific (application-specific: Cfengine, Matlab). They can be characterized as high-level and weakly typed, as opposed to system programming languages such as Java and C++ [11]. In higher education, scripting languages are used both for introductory programming courses [14] and for lab exercises in later courses. It is in this last context the present work seeks to contribute to a better learning experience for students. Although much effort has been invested in researching ways of teaching introductory programming [12], the problem of how to convert existing programming skills to a new language seems slightly overlooked. The way this is solved in practice is by either providing a short tutorial style introduction to the new language, or referring the student to an online tutorial resource. -
Korn Shell Variables
V4.1 cover Front cover Korn and Bash Shell Programming (Course code AL32) Student Notebook ERC 1.0 IBM Certified Course Material Student Notebook Trademarks IBM® is a registered trademark of International Business Machines Corporation. The following are trademarks of International Business Machines Corporation in the United States, or other countries, or both: AIX® AIX 5L™ Language Environment® OS/2® POWER™ RISC System/6000® RS/6000® Java and all Java-based trademarks are trademarks of Sun Microsystems, Inc. in the United States, other countries, or both. Windows is a trademark of Microsoft Corporation in the United States, other countries, or both. UNIX® is a registered trademark of The Open Group in the United States and other countries. Linux® is a registered trademark of Linus Torvalds in the United States, other countries, or both. Other company, product, or service names may be trademarks or service marks of others. October 2007 edition The information contained in this document has not been submitted to any formal IBM test and is distributed on an “as is” basis without any warranty either express or implied. The use of this information or the implementation of any of these techniques is a customer responsibility and depends on the customer’s ability to evaluate and integrate them into the customer’s operational environment. While each item may have been reviewed by IBM for accuracy in a specific situation, there is no guarantee that the same or similar results will result elsewhere. Customers attempting to adapt these techniques to their own environments do so at their own risk. © Copyright International Business Machines Corporation 2007. -
CS2043 - Unix Tools & Scripting Cornell University, Spring 20141
CS2043 - Unix Tools & Scripting Cornell University, Spring 20141 Instructor: Bruno Abrahao January 31, 2014 1 Slides evolved from previous versions by Hussam Abu-Libdeh and David Slater Instructor: Bruno Abrahao CS2043 - Unix Tools & Scripting Vim: Tip of the day! Line numbers Displays line number in Vim: :set nu Hides line number in Vim: :set nonu Goes to line number: :line number Instructor: Bruno Abrahao CS2043 - Unix Tools & Scripting Counting wc How many lines of code are in my new awesome program? How many words are in this document? Good for bragging rights Word, Character, Line, and Byte count with wc wc -l : count the number of lines wc -w : count the number of words wc -m : count the number of characters wc -c : count the number of bytes Instructor: Bruno Abrahao CS2043 - Unix Tools & Scripting Sorting sort Sorts the lines of a text file alphabetically. sort -ru file sorts the file in reverse order and deletes duplicate lines. sort -n -k 2 -t : file sorts the file numerically by using the second column, separated by a colon Example Consider a file (numbers.txt) with the numbers 1, 5, 8, 11, 62 each on a separate line, then: $ sort numbers.txt $ sort numbers.txt -n 1 1 11 5 5 8 62 11 8 62 Instructor: Bruno Abrahao CS2043 - Unix Tools & Scripting uniq uniq uniq file - Discards all but one of successive identical lines uniq -c file - Prints the number of successive identical lines next to each line Instructor: Bruno Abrahao CS2043 - Unix Tools & Scripting Character manipulation! The Translate Command tr [options] <char_list1> [char_list2] Translate or delete characters char lists are strings of characters By default, searches for characters in char list1 and replaces them with the ones that occupy the same position in char list2 Example: tr 'AEIOU' 'aeiou' - changes all capital vowels to lower case vowels Instructor: Bruno Abrahao CS2043 - Unix Tools & Scripting Pipes and redirection tr only receives input from standard input (stdin) i.e.