Biodiversity Loss and Ecological Network Structure
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The Robustness and Restoration of a Network of Ecological Networks
1 The robustness and restoration of a network of ecological networks 2 3 Michael J. O. Pocock1,2, Darren M. Evans1,3, Jane Memmott1 4 1 School of Biological Sciences, University of Bristol, Woodland Road, Bristol, BS8 1UG, 5 UK 6 2 Current address: Centre for Ecology and Hydrology, Crowmarsh Gifford, Wallingford, 7 Oxfordshire, OX10 8BB, UK 8 3 Current address: Department of Biological Sciences, Hardy Building, University of Hull, 9 Cottingham Road, Hull, HU6 7RX, UK 10 11 Correspondence to: Michael J. O. Pocock, Centre for Ecology and Hydrology, Crowmarsh 12 Gifford, Wallingford, Oxfordshire, OX10 8BB, UK. 13 Tel.: +44(0)117 9287481. 14 Email: [email protected] 15 16 1 sentence summary. The robustness of linked networks in an agroecosystem vary but do not 17 strongly co-vary. 18 This is the author's version of the work. It is posted here by permission of the AAAS for 19 personal use, not for redistribution. The definitive version was published in Science journal , 24 Feb 2012: Vol. 335, Issue 6071, pp. 973-977 DOI: 10.1126/science.1214915 1 20 Understanding species’ interactions and the robustness of interaction networks to 21 species loss is essential to understand the effects of species’ declines and extinctions. In 22 most studies, different types of network (e.g food webs, parasitoid webs, seed dispersal 23 networks and pollination networks) have been studied separately. We sampled such 24 multiple networks simultaneously in an agroecosystem. We show that the networks 25 varied in their robustness; networks including pollinators appeared particularly fragile. 26 We show that, overall, networks did not strongly co-vary in their robustness suggesting 27 that ecological restoration, e.g. -
When Corridors Work: Insights from a Microecosystem
ecological modelling 202 (2007) 441–453 available at www.sciencedirect.com journal homepage: www.elsevier.com/locate/ecolmodel When corridors work: Insights from a microecosystem Martin Hoyle ∗ School of Biology, University of Nottingham, Nottingham NG7 2RD, UK article info abstract Article history: Evidence for a beneficial effect of corridors on species richness and abundance in habitat Received 14 February 2006 patches is mixed. Even in a single microecosystem of microarthropods living in moss patches Received in revised form connected by a moss corridor, experiments have had different results (positive and neutral). 2 November 2006 This paper attempts to provide an explanatory framework for understanding these results. I Accepted 7 November 2006 developed a stochastic individual-based model of the moss—microarthropod microecosys- Published on line 12 December 2006 tem. Some of the movement parameter values were estimated from two manipulation experiments. Assuming mortality independent of the season, and assuming the corridors Keywords: merely increase migration rates between patches, only a very weak beneficial effect of corri- Conservation dors was possible in simulations. Incorporating a seasonal pattern to mortality caused some Habitat fragmentation simulated populations to die out, which were then occasionally rescued by migrants from Individual-based model the adjacent patch. Corridors were slightly beneficial if there was little or no immigration Metapopulation from the surrounding matrix. In contrast, corridors were very beneficial in simulations that Microarthropod incorporated lower emigration to the matrix when a corridor was present, even for moder- ate levels of immigration from the matrix. Thus corridors may reduce the chance of species extinction in patches even when the lifespan of the individuals is long relative to the time- scale in question. -
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The Restoration of Ecological Interactions: Plant–Pollinator
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Sussex Research Online Journal of Applied Ecology 2008, 45, 742–752 doi: 10.1111/j.1365-2664.2007.01390.x TheBlackwell Publishing Ltd restoration of ecological interactions: plant–pollinator networks on ancient and restored heathlands Mikael Lytzau Forup†, Kate S. E. Henson, Paul G. Craze and Jane Memmott* School of Biological Sciences, University of Bristol, Woodland Road, Bristol, BS8 1UG, UK Summary 1. Attempts to restore damaged ecosystems usually emphasize structural aspects of biodiversity, such as species richness and abundance. An alternative is to emphasize functional aspects, such as patterns of interaction between species. Pollination is a ubiquitous interaction between plants and animals. Patterns in plant–pollinator interactions can be analysed with a food web or complex- systems approach and comparing pollination webs between restored and reference sites can be used to test whether ecological restoration has taken place. 2. Using an ecological network approach, we compared plant–pollinator interactions on four pairs of restored and ancient heathlands 11 and 14 years following initiation of restoration management. We used the network data to test whether visitation by pollinators had been restored and we calculated pollinator importance indices for each insect species on the eight sites. Finally, we compared the robustness of the restored and ancient networks to species loss. 3. Plant and pollinator communities were established successfully on the restored sites. There was little evidence of movement of pollinators from ancient sites onto adjacent restored sites, although paired sites correlated in pollinator species richness in both years. -
A Keystone Predator Controls Bacterial Diversity in the Pitcher-Plant (Sarracenia Purpurea) Microecosystem
Environmental Microbiology (2008) 10(9), 2257–2266 doi:10.1111/j.1462-2920.2008.01648.x A keystone predator controls bacterial diversity in the pitcher-plant (Sarracenia purpurea) microecosystem Celeste N. Peterson,1,2* Stephanie Day,3,4† Introduction Benjamin E. Wolfe,1 Aaron M. Ellison,4 Bacterial assemblages may be structured by many Roberto Kolter2 and Anne Pringle1 forces at both local and regional scales. They are inte- 1Department of Organismic and Evolutionary Biology, grated into complex food webs and their composition, in Harvard University, Cambridge, MA 02138, USA. terms of species diversity and cell abundance, may be 2Department of Microbiology and Molecular Genetics, controlled by a combination of ‘top-down’ factors, such Harvard Medical School, Boston, MA 02115, USA. as grazing by predators, and ‘bottom-up’ factors, such 3Department of Biology, Howard University, Washington, as nutrient availability or other environmental param- DC 20059, USA. eters (Moran and Scheidler, 2002). Simple and well- 4Harvard Forest, Harvard University, Petersham, characterized natural model ecosystems can be used to MA 01366, USA. determine how each of these forces function and inter- act with each other at different scales. However, there is Summary a dearth of such systems available for field studies. That makes the model ecosystem of the carnivorous pitcher- The community of organisms inhabiting the water- plant Sarracenia purpurea (Sarraceniaceae) particularly filled leaves of the carnivorous pitcher-plant Sarrace- valuable. nia purpurea includes arthropods, protozoa and The food web that forms in the water-filled leaves of bacteria, and serves as a model system for studies of S. purpurea (Sarraceniaceae) has been used as a model food web dynamics. -
Global Warming and the Disruption of Plant–Pollinator Interactions
Ecology Letters, (2007) 10: 710–717 doi: 10.1111/j.1461-0248.2007.01061.x LETTER Global warming and the disruption of plant–pollinator interactions Abstract Jane Memmott,1* Paul G. Craze,1 Anthropogenic climate change is widely expected to drive species extinct by hampering Nickolas M. Waser2 and Mary V. individual survival and reproduction, by reducing the amount and accessibility of suitable Price2 habitat, or by eliminating other organisms that are essential to the species in question. 1 School of Biological Sciences, Less well appreciated is the likelihood that climate change will directly disrupt or University of Bristol, Bristol BS8 eliminate mutually beneficial (mutualistic) ecological interactions between species even 1UG, UK before extinctions occur. We explored the potential disruption of a ubiquitous 2School of Natural Resources, mutualistic interaction of terrestrial habitats, that between plants and their animal University of Arizona, Tucson, pollinators, via climate change. We used a highly resolved empirical network of AZ 85721, USA *Correspondence: E-mail: interactions between 1420 pollinator and 429 plant species to simulate consequences of [email protected] the phenological shifts that can be expected with a doubling of atmospheric CO2. Depending on model assumptions, phenological shifts reduced the floral resources available to 17–50% of all pollinator species, causing as much as half of the ancestral activity period of the animals to fall at times when no food plants were available. Reduced overlap between plants and pollinators also decreased diet breadth of the pollinators. The predicted result of these disruptions is the extinction of pollinators, plants and their crucial interactions. -
Molecular Musings in Microbial Ecology and Evolution Rebecca J Case* and Yan Boucher*
Case and Boucher Biology Direct 2011, 6:58 http://www.biology-direct.com/content/6/1/58 REVIEW Open Access Molecular musings in microbial ecology and evolution Rebecca J Case* and Yan Boucher* Abstract: A few major discoveries have influenced how ecologists and evolutionists study microbes. Here, in the format of an interview, we answer questions that directly relate to how these discoveries are perceived in these two branches of microbiology, and how they have impacted on both scientific thinking and methodology. The first question is “What has been the influence of the ‘Universal Tree of Life’ based on molecular markers?” For evolutionists, the tree was a tool to understand the past of known (cultured) organisms, mapping the invention of various physiologies on the evolutionary history of microbes. For ecologists the tree was a guide to discover the current diversity of unknown (uncultured) organisms, without much knowledge of their physiology. The second question we ask is “What was the impact of discovering frequent lateral gene transfer among microbes?” In evolutionary microbiology, frequent lateral gene transfer (LGT) made a simple description of relationships between organisms impossible, and for microbial ecologists, functions could not be easily linked to specific genotypes. Both fields initially resisted LGT, but methods or topics of inquiry were eventually changed in one to incorporate LGT in its theoretical models (evolution) and in the other to achieve its goals despite that phenomenon (ecology). The third and last question we ask is “What are the implications of the unexpected extent of diversity?” The variation in the extent of diversity between organisms invalidated the universality of species definitions based on molecular criteria, a major obstacle to the adaptation of models developed for the study of macroscopic eukaryotes to evolutionary microbiology. -
Linking the Development and Functioning of a Carnivorous Pitcher Plant’S Microbial Digestive Community
The ISME Journal (2017) 11, 2439–2451 © 2017 International Society for Microbial Ecology All rights reserved 1751-7362/17 www.nature.com/ismej ORIGINAL ARTICLE Linking the development and functioning of a carnivorous pitcher plant’s microbial digestive community David W Armitage1,2 1Department of Integrative Biology, University of California Berkeley, Berkeley, CA, USA and 2Department of Biological Sciences, University of Notre Dame, Notre Dame, IN, USA Ecosystem development theory predicts that successional turnover in community composition can influence ecosystem functioning. However, tests of this theory in natural systems are made difficult by a lack of replicable and tractable model systems. Using the microbial digestive associates of a carnivorous pitcher plant, I tested hypotheses linking host age-driven microbial community development to host functioning. Monitoring the yearlong development of independent microbial digestive communities in two pitcher plant populations revealed a number of trends in community succession matching theoretical predictions. These included mid-successional peaks in bacterial diversity and metabolic substrate use, predictable and parallel successional trajectories among microbial communities, and convergence giving way to divergence in community composition and carbon substrate use. Bacterial composition, biomass, and diversity positively influenced the rate of prey decomposition, which was in turn positively associated with a host leaf’s nitrogen uptake efficiency. Overall digestive performance was -
Biodiversity and Ecosystem Functioning in Soil
Article Lijbert Brussaard et al. Biodiversity and Ecosystem Functioning in Soil ognition of the pivotal role of the world's biota as the life-sup- We review the current knowledge on biodiversity in soils, port system for planet Earth, has revived interest in soil its role in ecosystem processes, its importance for human biodiversity as an asset to conserve, to understand and to man- purposes, and its resilience against stress and disturbance. age wisely in terms of its contribution to ecosystem services. The number of existing species is vastly higher than the The objective of this paper is to review the knowledge on the number described, even in the macroscopically visible diversity of soil biota and its role in ecosystem functioning, and taxa, and biogeographical syntheses are largely lacking. to identify key areas for future research. A major effort in taxonomy and the training of a new Although the diversity of soil organisms is worth conserving generation of systematists is imperative. This effort has to and studying in its own right, their functional roles offer a use- be focussed on the groups of soil organisms that, to the ful framework for making this effort more meaningful. We will best of our knowledge, play key roles in ecosystem functioning. To identify such groups, spheres of influence first define functional roles in a utilitarian way as ecosystem (SOI) of soil biota-such as the root biota, the shredders services. We will then have a closer look at what we mean by of organic matter and the soil bioturbators-are recognized biodiversity in soil, emphasizing spheres of influence (2; 'bio- that presumably control ecosystem processes, for logical systems of regulation' in 3) of the biota in soil and vari- example, through interactions with plants. -
Microbial Experimental Systems in Ecology
Microbial Experimental Systems in Ecology CHRISTINE M. JESSUP, SAMANTHA E. FORDE AND BRENDAN J.M. BOHANNAN I. Summary . .............................................. 273 II. Introduction. .......................................... 274 III. The History of Microbial Experimental Systems in Ecology . ...... 275 A. G.F. Gause and His Predecessors . ...................... 275 B. Studies Since Gause . .................................. 276 IV. Strengths and Limitations of Microbial Experimental Systems ...... 277 A. Strengths of Microbial Experimental Systems . .............. 277 B. Limitations of Microbial Experimental Systems . .......... 281 V. The Role of Microbial Experimental Systems in Ecology: Consensus and Controversy. .............................. 283 A. The Role of Microbial Experimental Systems . .............. 283 B. Controversies Surrounding Experimental Systems and Microbial Experimental Systems . ...................... 285 VI. Recent Studies of Microbial Experimental Systems . .............. 289 A. The Ecological Causes of Diversity . ...................... 290 B. The Ecological Consequences of Diversity.................. 296 C. The Response of Diversity to Environmental Change . ...... 298 D. Directions for Future Research .......................... 299 VII. Conclusions . .......................................... 300 Acknowledgments. .......................................... 300 References................................................... 300 I. SUMMARY The use of microbial experimental systems has traditionally been limited -
Regime Shifts and Hysteresis in the Pitcher-Plant Microecosystem T ⁎ Matthew K
Ecological Modelling 382 (2018) 1–8 Contents lists available at ScienceDirect Ecological Modelling journal homepage: www.elsevier.com/locate/ecolmodel Regime shifts and hysteresis in the pitcher-plant microecosystem T ⁎ Matthew K. Laua, , Benjamin Baiserb, Amanda Northropc, Nicholas J. Gotellic, Aaron M. Ellisona a Harvard University, Harvard Forest, 324 N Main St, Petersham, MA 01366, United States b University of Florida, Department of Wildlife Ecology and Conservation, 110 Newins-Ziegler Hall, PO Box 110430, Gainesville, FL 32611, USA c University of Vermont, Department of Biology, Room 120A, Marsh Life Science Building, Burlington, VT 05405, USA ARTICLE INFO ABSTRACT Keywords: Changes in environmental conditions can lead to rapid shifts in the state of an ecosystem (“regime shifts”), Ecosystem dynamics which, even after the environment has returned to previous conditions, subsequently recovers slowly to the Non-linear systems previous state (“hysteresis”). Large spatial and temporal scales of dynamics, and the lack of frameworks linking Food webs observations to models, are challenges to understanding and predicting ecosystem responses to perturbations. Ecological networks The naturally-occurring microecosystem inside leaves of the northern pitcher plant (Sarracenia purpurea) exhibits Nutrients oligotrophic and eutrophic states that can be induced by adding insect prey. Here, we further develop a model Dissolved oxygen Hysteresis for simulating these dynamics, parameterize it using data from a prey addition experiment and conduct a Regime shifts sensitivity analysis to identify critical zones within the parameter space. Simulations illustrate that the micro- ecosystem model displays regime shifts and hysteresis. Parallel results were observed in the plant itself after experimental enrichment with prey. Decomposition rate of prey was the main driver of system dynamics, in- cluding the time the system remains in an anoxic state and the rate of return to an oxygenated state. -
Regime Shifts and Hysteresis in the Pitcher-Plant Microecosystem
bioRxiv preprint doi: https://doi.org/10.1101/087296; this version posted November 17, 2017. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Regime shifts and hysteresis in the pitcher-plant microecosystem Matthew K. Laua,∗, Benjamin Baizerb, Amanda Northropc, Nicholas J. Gotellic, Aaron M. Ellisona aHarvard University, Harvard Forest, 324 N Main St, Petersham, MA 01366 bUniversity of Florida, Department of Wildlife Ecology and Conservation, 110 Newins-Ziegler Hall, PO Box 110430, Gainesville, FL 32611 cUniversity of Vermont, Department of Biology, Room 120A, Marsh Life Science Building, Burlington, Vermont 05405 Abstract Changes in environmental conditions can lead to rapid shifts in ecosys- tem state ("regime shifts"), which subsequently returns slowly to the pre- vious state ("hysteresis"). Large spatial and temporal scales of dynam- ics, and the lack of frameworks linking observations to models, are chal- lenges to understanding and predicting ecosystem responses to perturbations. The naturally-occurring microecosystem inside leaves of the northern pitcher plant (Sarracenia purpurea) exhibits oligotrophic and eutrophic states that can be induced by adding insect \prey." Here, we further develop a model for simulating these dynamics, parameterize it using data from a prey addi- tion experiment and conduct a sensitivity analysis to identify critical zones within the parameter space. Simulations illustrate that the microecosystem model displays regime shifts and hysteresis. Parallel results were observed in the plant itself after experimental enrichment with prey. Decomposition rate of prey was the main driver of system dynamics, including the time the system remains in an anoxic state and the rate of return to an oxygenated state.