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Checklist of Calicioid Lichens and Fungi for Genera with Members in Temperate Western North America Draft: 2012-03-13
Draft: 2012-03-13 Checklist of Calicioids – E. B. Peterson Checklist of Calicioid Lichens and Fungi For Genera with Members in Temperate Western North America Draft: 2012-03-13 by E. B. Peterson Calicium abietinum, EBP#4640 1 Draft: 2012-03-13 Checklist of Calicioids – E. B. Peterson Genera Acroscyphus Lév. Brucea Rikkinen Calicium Pers. Chaenotheca Th. Fr. Chaenothecopsis Vainio Coniocybe Ach. = Chaenotheca "Cryptocalicium" – potentially undescribed genus; taxonomic placement is not known but there are resemblances both to Mycocaliciales and Onygenales Cybebe Tibell = Chaenotheca Cyphelium Ach. Microcalicium Vainio Mycocalicium Vainio Phaeocalicium A.F.W. Schmidt Sclerophora Chevall. Sphinctrina Fr. Stenocybe (Nyl.) Körber Texosporium Nádv. ex Tibell & Hofsten Thelomma A. Massal. Tholurna Norman Additional genera are primarily tropical, such as Pyrgillus, Tylophoron About the Species lists Names in bold are believed to be currently valid names. Old synonyms are indented and listed with the current name following (additional synonyms can be found in Esslinger (2011). Names in quotes are nicknames for undescribed species. Names given within tildes (~) are published, but may not be validly published. Underlined species are included in the checklist for North America north of Mexico (Esslinger 2011). Names are given with authorities and original citation date where possible, followed by a colon. Additional citations are given after the colon, followed by a series of abbreviations for states and regions where known. States and provinces use the standard two-letter abbreviation. Regions include: NAm = North America; WNA = western North America (west of the continental divide); Klam = Klamath Region (my home territory). For those not known from North America, continental distribution may be given: SAm = South America; EUR = Europe; ASIA = Asia; Afr = Africa; Aus = Australia. -
Appendix K. Survey and Manage Species Persistence Evaluation
Appendix K. Survey and Manage Species Persistence Evaluation Establishment of the 95-foot wide construction corridor and TEWAs would likely remove individuals of H. caeruleus and modify microclimate conditions around individuals that are not removed. The removal of forests and host trees and disturbance to soil could negatively affect H. caeruleus in adjacent areas by removing its habitat, disturbing the roots of host trees, and affecting its mycorrhizal association with the trees, potentially affecting site persistence. Restored portions of the corridor and TEWAs would be dominated by early seral vegetation for approximately 30 years, which would result in long-term changes to habitat conditions. A 30-foot wide portion of the corridor would be maintained in low-growing vegetation for pipeline maintenance and would not provide habitat for the species during the life of the project. Hygrophorus caeruleus is not likely to persist at one of the sites in the project area because of the extent of impacts and the proximity of the recorded observation to the corridor. Hygrophorus caeruleus is likely to persist at the remaining three sites in the project area (MP 168.8 and MP 172.4 (north), and MP 172.5-172.7) because the majority of observations within the sites are more than 90 feet from the corridor, where direct effects are not anticipated and indirect effects are unlikely. The site at MP 168.8 is in a forested area on an east-facing slope, and a paved road occurs through the southeast part of the site. Four out of five observations are more than 90 feet southwest of the corridor and are not likely to be directly or indirectly affected by the PCGP Project based on the distance from the corridor, extent of forests surrounding the observations, and proximity to an existing open corridor (the road), indicating the species is likely resilient to edge- related effects at the site. -
An Evolving Phylogenetically Based Taxonomy of Lichens and Allied Fungi
Opuscula Philolichenum, 11: 4-10. 2012. *pdf available online 3January2012 via (http://sweetgum.nybg.org/philolichenum/) An evolving phylogenetically based taxonomy of lichens and allied fungi 1 BRENDAN P. HODKINSON ABSTRACT. – A taxonomic scheme for lichens and allied fungi that synthesizes scientific knowledge from a variety of sources is presented. The system put forth here is intended both (1) to provide a skeletal outline of the lichens and allied fungi that can be used as a provisional filing and databasing scheme by lichen herbarium/data managers and (2) to announce the online presence of an official taxonomy that will define the scope of the newly formed International Committee for the Nomenclature of Lichens and Allied Fungi (ICNLAF). The online version of the taxonomy presented here will continue to evolve along with our understanding of the organisms. Additionally, the subfamily Fissurinoideae Rivas Plata, Lücking and Lumbsch is elevated to the rank of family as Fissurinaceae. KEYWORDS. – higher-level taxonomy, lichen-forming fungi, lichenized fungi, phylogeny INTRODUCTION Traditionally, lichen herbaria have been arranged alphabetically, a scheme that stands in stark contrast to the phylogenetic scheme used by nearly all vascular plant herbaria. The justification typically given for this practice is that lichen taxonomy is too unstable to establish a reasonable system of classification. However, recent leaps forward in our understanding of the higher-level classification of fungi, driven primarily by the NSF-funded Assembling the Fungal Tree of Life (AFToL) project (Lutzoni et al. 2004), have caused the taxonomy of lichen-forming and allied fungi to increase significantly in stability. This is especially true within the class Lecanoromycetes, the main group of lichen-forming fungi (Miadlikowska et al. -
The Lichen Flora of Gunib Plateau, Inner-Mountain Dagestan (North-East Caucasus, Russia)
Turkish Journal of Botany Turk J Bot (2013) 37: 753-768 http://journals.tubitak.gov.tr/botany/ © TÜBİTAK Research Article doi:10.3906/bot-1205-4 The lichen flora of Gunib plateau, inner-mountain Dagestan (North-East Caucasus, Russia) 1, 2 Gennadii URBANAVICHUS * , Aziz ISMAILOV 1 Institute of North Industrial Ecology Problems, Kola Science Centre, Russian Academy of Sciences, Apatity, Murmansk Region, Russia 2 Mountain Botanical Garden, Dagestan Scientific Centre, Russian Academy of Sciences, Makhachkala, Republic of Dagestan, Russia Received: 02.05.2012 Accepted: 15.03.2013 Published Online: 02.07.2013 Printed: 02.08.2013 Abstract: As a result of lichenological exploration of the Gunib plateau in the Republic of Dagestan (North-East Caucasus, Russia), we report 402 species of lichenised, 37 lichenicolous, and 7 nonlichenised fungi representing 151 genera. Nineteen species are recorded for the first time for Russia: Abrothallus chrysanthus J.Steiner, Abrothallus microspermus Tul., Caloplaca albopruinosa (Arnold) H.Olivier, Candelariella plumbea Poelt & Vězda, Candelariella rhodax Poelt & Vězda, Cladonia firma (Nyl.) Nyl., Halospora deminuta (Arnold) Tomas. & Cif., Halospora discrepans (J.Lahm ex Arnold) Hafellner, Lichenostigma epipolina Nav.-Ros., Calat. & Hafellner, Milospium graphideorum (Nyl.) D.Hawksw., Mycomicrothelia atlantica D.Hawksw. & Coppins, Parabagliettoa cyanea (A.Massal.) Gueidan & Cl.Roux, Placynthium garovaglioi (A.Massal.) Malme, Polyblastia dermatodes A.Massal., Rusavskia digitata (S.Y.Kondr.) S.Y.Kondr. & Kärnefelt, Squamarina stella-petraea Poelt, Staurothele elenkinii Oxner, Toninia nordlandica Th.Fr., and Verrucaria endocarpoides Servít. In addition, 71 taxa are new records for the Caucasus and 15 are new to Asia. Key words: Lichens, lichenicolous fungi, biodiversity, Gunib plateau, limestone, Dagestan, Caucasus, Russia 1. -
Lichens and Associated Fungi from Glacier Bay National Park, Alaska
The Lichenologist (2020), 52,61–181 doi:10.1017/S0024282920000079 Standard Paper Lichens and associated fungi from Glacier Bay National Park, Alaska Toby Spribille1,2,3 , Alan M. Fryday4 , Sergio Pérez-Ortega5 , Måns Svensson6, Tor Tønsberg7, Stefan Ekman6 , Håkon Holien8,9, Philipp Resl10 , Kevin Schneider11, Edith Stabentheiner2, Holger Thüs12,13 , Jan Vondrák14,15 and Lewis Sharman16 1Department of Biological Sciences, CW405, University of Alberta, Edmonton, Alberta T6G 2R3, Canada; 2Department of Plant Sciences, Institute of Biology, University of Graz, NAWI Graz, Holteigasse 6, 8010 Graz, Austria; 3Division of Biological Sciences, University of Montana, 32 Campus Drive, Missoula, Montana 59812, USA; 4Herbarium, Department of Plant Biology, Michigan State University, East Lansing, Michigan 48824, USA; 5Real Jardín Botánico (CSIC), Departamento de Micología, Calle Claudio Moyano 1, E-28014 Madrid, Spain; 6Museum of Evolution, Uppsala University, Norbyvägen 16, SE-75236 Uppsala, Sweden; 7Department of Natural History, University Museum of Bergen Allégt. 41, P.O. Box 7800, N-5020 Bergen, Norway; 8Faculty of Bioscience and Aquaculture, Nord University, Box 2501, NO-7729 Steinkjer, Norway; 9NTNU University Museum, Norwegian University of Science and Technology, NO-7491 Trondheim, Norway; 10Faculty of Biology, Department I, Systematic Botany and Mycology, University of Munich (LMU), Menzinger Straße 67, 80638 München, Germany; 11Institute of Biodiversity, Animal Health and Comparative Medicine, College of Medical, Veterinary and Life Sciences, University of Glasgow, Glasgow G12 8QQ, UK; 12Botany Department, State Museum of Natural History Stuttgart, Rosenstein 1, 70191 Stuttgart, Germany; 13Natural History Museum, Cromwell Road, London SW7 5BD, UK; 14Institute of Botany of the Czech Academy of Sciences, Zámek 1, 252 43 Průhonice, Czech Republic; 15Department of Botany, Faculty of Science, University of South Bohemia, Branišovská 1760, CZ-370 05 České Budějovice, Czech Republic and 16Glacier Bay National Park & Preserve, P.O. -
Phylogeny, Taxonomy and Diversification Events in the Caliciaceae
Fungal Diversity DOI 10.1007/s13225-016-0372-y Phylogeny, taxonomy and diversification events in the Caliciaceae Maria Prieto1,2 & Mats Wedin1 Received: 21 December 2015 /Accepted: 19 July 2016 # The Author(s) 2016. This article is published with open access at Springerlink.com Abstract Although the high degree of non-monophyly and Calicium pinicola, Calicium trachyliodes, Pseudothelomma parallel evolution has long been acknowledged within the occidentale, Pseudothelomma ocellatum and Thelomma mazaediate Caliciaceae (Lecanoromycetes, Ascomycota), a brunneum. A key for the mazaedium-producing Caliciaceae is natural re-classification of the group has not yet been accom- included. plished. Here we constructed a multigene phylogeny of the Caliciaceae-Physciaceae clade in order to resolve the detailed Keywords Allocalicium gen. nov. Calicium fossil . relationships within the group, to propose a revised classification, Divergence time estimates . Lichens . Multigene . and to perform a dating study. The few characters present in the Pseudothelomma gen. nov available fossil and the complex character evolution of the group affects the interpretation of morphological traits and thus influ- ences the assignment of the fossil to specific nodes in the phy- Introduction logeny, when divergence time analyses are carried out. Alternative fossil assignments resulted in very different time es- Caliciaceae is one of several ascomycete groups characterized timates and the comparison with the analysis based on a second- by producing prototunicate (thin-walled and evanescent) asci ary calibration demonstrates that the most likely placement of the and a mazaedium (an accumulation of loose, maturing spores fossil is close to a terminal node rather than a basal placement in covering the ascoma surface). -
The Phylogeny of Plant and Animal Pathogens in the Ascomycota
Physiological and Molecular Plant Pathology (2001) 59, 165±187 doi:10.1006/pmpp.2001.0355, available online at http://www.idealibrary.com on MINI-REVIEW The phylogeny of plant and animal pathogens in the Ascomycota MARY L. BERBEE* Department of Botany, University of British Columbia, 6270 University Blvd, Vancouver, BC V6T 1Z4, Canada (Accepted for publication August 2001) What makes a fungus pathogenic? In this review, phylogenetic inference is used to speculate on the evolution of plant and animal pathogens in the fungal Phylum Ascomycota. A phylogeny is presented using 297 18S ribosomal DNA sequences from GenBank and it is shown that most known plant pathogens are concentrated in four classes in the Ascomycota. Animal pathogens are also concentrated, but in two ascomycete classes that contain few, if any, plant pathogens. Rather than appearing as a constant character of a class, the ability to cause disease in plants and animals was gained and lost repeatedly. The genes that code for some traits involved in pathogenicity or virulence have been cloned and characterized, and so the evolutionary relationships of a few of the genes for enzymes and toxins known to play roles in diseases were explored. In general, these genes are too narrowly distributed and too recent in origin to explain the broad patterns of origin of pathogens. Co-evolution could potentially be part of an explanation for phylogenetic patterns of pathogenesis. Robust phylogenies not only of the fungi, but also of host plants and animals are becoming available, allowing for critical analysis of the nature of co-evolutionary warfare. Host animals, particularly human hosts have had little obvious eect on fungal evolution and most cases of fungal disease in humans appear to represent an evolutionary dead end for the fungus. -
A Multigene Phylogenetic Synthesis for the Class Lecanoromycetes (Ascomycota): 1307 Fungi Representing 1139 Infrageneric Taxa, 317 Genera and 66 Families
A multigene phylogenetic synthesis for the class Lecanoromycetes (Ascomycota): 1307 fungi representing 1139 infrageneric taxa, 317 genera and 66 families Miadlikowska, J., Kauff, F., Högnabba, F., Oliver, J. C., Molnár, K., Fraker, E., ... & Stenroos, S. (2014). A multigene phylogenetic synthesis for the class Lecanoromycetes (Ascomycota): 1307 fungi representing 1139 infrageneric taxa, 317 genera and 66 families. Molecular Phylogenetics and Evolution, 79, 132-168. doi:10.1016/j.ympev.2014.04.003 10.1016/j.ympev.2014.04.003 Elsevier Version of Record http://cdss.library.oregonstate.edu/sa-termsofuse Molecular Phylogenetics and Evolution 79 (2014) 132–168 Contents lists available at ScienceDirect Molecular Phylogenetics and Evolution journal homepage: www.elsevier.com/locate/ympev A multigene phylogenetic synthesis for the class Lecanoromycetes (Ascomycota): 1307 fungi representing 1139 infrageneric taxa, 317 genera and 66 families ⇑ Jolanta Miadlikowska a, , Frank Kauff b,1, Filip Högnabba c, Jeffrey C. Oliver d,2, Katalin Molnár a,3, Emily Fraker a,4, Ester Gaya a,5, Josef Hafellner e, Valérie Hofstetter a,6, Cécile Gueidan a,7, Mónica A.G. Otálora a,8, Brendan Hodkinson a,9, Martin Kukwa f, Robert Lücking g, Curtis Björk h, Harrie J.M. Sipman i, Ana Rosa Burgaz j, Arne Thell k, Alfredo Passo l, Leena Myllys c, Trevor Goward h, Samantha Fernández-Brime m, Geir Hestmark n, James Lendemer o, H. Thorsten Lumbsch g, Michaela Schmull p, Conrad L. Schoch q, Emmanuël Sérusiaux r, David R. Maddison s, A. Elizabeth Arnold t, François Lutzoni a,10, -
Calicium Denigratum (Vain.) Tibell, a New Lichen Record for North America
North American Fungi Volume 7, Number 11, Pages 1-5 Published October 26, 2012 Calicium denigratum (Vain.) Tibell, a new lichen record for North America Richard Troy McMullin1,, Steven B. Selva2, Jose R. Maloles1, and Steven G. Newmaster1 1Biodiversity Institute of Ontario Herbarium, Integrative Biology, University of Guelph, Guelph, Ontario, N1G 2W1 2University of Maine at Fort Kent, 23 University Drive, Fort Kent, Maine 04743 McMullin, R. T., S. B. Selva, J. R. Maloles, and S. G. Newmaster. 2012. Calicium denigratum (Vain.) Tibell, a new lichen record for North America. North American Fungi 7(11): 1-5. doi: http://dx.doi: 10.2509/naf2012.007.011 Corresponding author: R. Troy McMullin, [email protected]. Accepted for publication October 23, 2012. http://pnwfungi.org Copyright © 2012 Pacific Northwest Fungi Project. All rights reserved. Abstract: Calicium denigratum was previously known from Europe and Siberia. It is reported here for the first time in North America from open canopy woodlands in northeastern Ontario and northeastern New Brunswick. Distinctions between the two species that are most similar, C. abietinum and C. glaucellum, are also presented. Key words: Calicium denigratum, Calicium abietinum, Calicium glaucellum, North America. 2 McMullin et al. Calicium denigratum in North America. North American Fungi 7(11): 1-5 Introduction and Methods: Calicium was 101-140 yrs old, the canopy closure was 44%, denigratum (Vain.) Tibell (syn. Calicium curtum the live tree stem density was 320 stems/ha, the var. denigratum Vain.) was first moved to the snag stem density was 69 stems/hectare, and the species level by Tibell (1976). This uncommon tree composition was Picea mariana 68% and lichen occurs in open canopy woodlands in Pinus banksiana 32%. -
Chaenotheca Chrysocephala Species Fact Sheet
SPECIES FACT SHEET Common Name: yellow-headed pin lichen Scientific Name: Chaenotheca chrysocephala (Turner ex Ach.) Th. Fr. Division: Ascomycota Class: Sordariomycetes Order: Trichosphaeriales Family: Coniocybaceae Technical Description: Crustose lichen. Photosynthetic partner Trebouxia. Thallus visible on substrate, made of fine grains or small lumps or continuous, greenish yellow. Sometimes thallus completely immersed and not visible on substrate. Spore-producing structure (apothecium) pin- like, comprised of a obovoid to broadly obconical head (capitulum) 0.2-0.3 mm diameter on a slender stalk, the stalk 0.6-1.3 mm tall and 0.04 -0.8 mm diameter; black or brownish black or brown with dense yellow colored powder on the upper part. Capitulum with fine chartreuse- yellow colored powder (pruina) on the under side. Upper side with a mass of powdery brown spores (mazaedium). Spore sacs (asci) cylindrical, 14-19 x 2.0-3.5 µm and disintegrating; spores arranged in one line in the asci (uniseriate), 1-celled, 6-9 x 4-5 µm, short ellipsoidal to globose with rough ornamentation of irregular cracks. Chemistry: all spot tests negative. Thallus and powder on stalk (pruina) contain vulpinic acid, which gives them the chartreuse-yellow color. This acid also colors Letharia spp., the wolf lichens. Other descriptions and illustrations: Nordic Lichen Flora 1999, Peterson (no date), Sharnoff (no date), Stridvall (no date), Tibell 1975. Distinctive Characters: (1) bright chartreuse-yellow thallus with yellow pruina under capitulum and on the upper part of the stalk, (2) spore mass brown, (3) spores unicellular (4) thallus of small yellow lumps. Similar species: Many other pin lichens look similar to Chaenotheca chrysocephala. -
A Provisional Checklist of the Lichens of Belarus
Opuscula Philolichenum, 17: 374-479. 2018. *pdf effectively published online 31December2018 via (http://sweetgum.nybg.org/philolichenum/) A Provisional Checklist of the Lichens of Belarus ANDREI TSURYKAU1 ABSTRACT. – A total of 606 species and five subspecific taxa of lichens and allied fungi are documented from Belarus based on combined historical (pre-1980) and modern (post-1980) records. Of these, 50 (8.3%) are represented by only historical reports, 235 (38.8%) are represented by only modern vouchers, and 310 (51.2%) are represented by both historical and modern records. Eleven species are known only from generalized published reports that lacked specific location data. Eighty-eight species are excluded as erroneous reports, or considered as doubtful records. KEYWORDS. – Biodiversity, distribution, lichenized fungi, historical baseline. INTRODUCTION Published accounts of the lichens of Belarus date to the end of the 18th century (Gilibert 1781). In the first phase of lichenological discovery in the country (1780–1900) lichens did not attract special attention and were reported among the general lists of vascular plants and fungi. However, 49 species were reported by the French botanist J.E. Gilibert, the Russian ethnographer of Belarusian origin N. Downar (Dovnar-Zapol'skiy) and Polish botanists K. Filipowicz and F. Błoński (Błoński 1888, 1889; Downar 1861; Filipowicz 1881; Gilibert 1781, 1792). In the early 20th century (1900–1925), there was a second phase of lichenological discovery in Belarus. During that time, Belarusian pioneer lichenologist V.P. Savicz and his wife L.I. Ljubitzkaja (later Savicz-Ljubitzkaja) reported 91 species new to the country (Ljubitzkaja 1914; Savicz 1909, 1910, 1911, 1925; Savicz & Savicz 1924; Wyssotzky et al. -
Remarkable Records of Lichens and Lichenicolous Fungi Found During a Nordic Lichen Society Meeting in Estonia
Folia Cryptog. Estonica, Fasc. 57: 73–84 (2020) https://doi.org/10.12697/fce.2020.57.09 Where the interesting species grow – remarkable records of lichens and lichenicolous fungi found during a Nordic Lichen Society meeting in Estonia Ave Suija1, Inga Jüriado1, Piret Lõhmus1, Rolands Moisejevs2, Jurga Motiejūnaitė3, Andrei Tsurykau4,5, Martin Kukwa6 1Institute of Ecology and Earth Sciences, University of Tartu, Lai 40, EE-51005 Tartu, Estonia. E-mails: [email protected]; [email protected]; [email protected] 2Institute of Life Sciences and Technology, Daugavpils University, Parades 1A, LV-5401 Daugavpils, Latvia. E-mail: [email protected] 3Institute of Botany, Nature Research Centre, Žaliųjų Ežerų 49, LT-08406 Vilnius, Lithuania. E-mail: [email protected] 4Department of Biology, Francisk Skorina Gomel State University, Sovetskaja 104, BY-246019 Gomel, Belarus. E-mail: [email protected] 5Department of Ecology, Botany and Nature Protection, Institute of Natural Sciences, Samara National Research University, Moskovskoye road 34, RU-443086 Samara, Russia 6Department of Plant Taxonomy and Nature Conservation, Faculty of Biology, University of Gdańsk, Wita Stwosza 59, PL-80–308 Gdańsk, Poland. E-mail: [email protected] Abstract: In August 2019, the Nordic Lichen Society held its bi-annual meeting and excursion in south-western Estonia. The most remarkable findings of lichenized and lichenicolous fungi are recorded herewith, including nine new species (of them two lichenicolous), and one new intraspecific taxon for the country. Full species lists are provided for two notable locations, sandstone outcrop at the river Pärnu and an oak woodland in the Naissoo Nature Reserve, for which no previous data were available, to illustrate the importance of collective survey effort.